IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: Y

Select Genome:

Bacterial Genome print " Yersinia enterocolitica subsp. enterocolitica 8081 plasmid pYVe8081"; print " Yersinia enterocolitica subsp. enterocolitica 8081"; print " Yersinia pestis Angola plasmid new_pCD"; print " Yersinia pestis Angola plasmid pMT-pPCP"; print " Yersinia pestis Angola"; print " Yersinia pestis Antiqua plasmid pCD"; print " Yersinia pestis Antiqua plasmid pMT"; print " Yersinia pestis Antiqua plasmid pPCP"; print " Yersinia pestis Antiqua"; print " Yersinia pestis CO92 plasmid pCD1"; print " Yersinia pestis CO92 plasmid pMT1"; print " Yersinia pestis CO92 plasmid pPCP1"; print " Yersinia pestis CO92"; print " Yersinia pestis KIM plasmid pMT-1"; print " Yersinia pestis KIM"; print " Yersinia pestis Nepal516 plasmid pMT"; print " Yersinia pestis Nepal516 plasmid pPCP"; print " Yersinia pestis Nepal516"; print " Yersinia pestis Pestoides F plasmid CD"; print " Yersinia pestis Pestoides F plasmid MT"; print " Yersinia pestis Pestoides F"; print " Yersinia pestis biovar Microtus str. 91001 plasmid pCD1"; print " Yersinia pestis biovar Microtus str. 91001 plasmid pCRY"; print " Yersinia pestis biovar Microtus str. 91001 plasmid pMT1"; print " Yersinia pestis biovar Microtus str. 91001 plasmid pPCP1"; print " Yersinia pestis biovar Microtus str. 91001"; print " Yersinia pseudotuberculosis IP 31758 plasmid_153kb"; print " Yersinia pseudotuberculosis IP 31758 plasmid_59kb"; print " Yersinia pseudotuberculosis IP 31758"; print " Yersinia pseudotuberculosis IP 32953 plasmid pYV"; print " Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953"; print " Yersinia pseudotuberculosis IP 32953"; print " Yersinia pseudotuberculosis PB1/+ plasmid pYPTS01"; print " Yersinia pseudotuberculosis PB1/+"; print " Yersinia pseudotuberculosis YPIII"; Viral Genome print " Y73 sarcoma virus"; print " Yaba monkey tumor virus"; print " Yaba-like disease virus"; print " Yam mosaic virus"; print " Yellow fever virus"; print " Yellowtail ascites virus segment A"; print " Yellowtail ascites virus segment B"; print " Yersinia pestis phage phiA1122"; print " Yersinia phage Berlin"; print " Yersinia phage L-413C"; print " Yersinia phage PY54"; print " Yersinia phage Yepe2"; print " Yersinia phage phiYeO3-12"; print " Yokose virus"; print " Youcai mosaic virus"; print " Yunnan orbivirus segment 1"; print " Yunnan orbivirus segment 10"; print " Yunnan orbivirus segment 2"; print " Yunnan orbivirus segment 3"; print " Yunnan orbivirus segment 4"; print " Yunnan orbivirus segment 5"; print " Yunnan orbivirus segment 6"; print " Yunnan orbivirus segment 7"; print " Yunnan orbivirus segment 8"; print " Yunnan orbivirus segment 9";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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