IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: M

Select Genome:

Bacterial Genome print " Macrococcus caseolyticus JCSC5402 plasmid pMCCL1"; print " Macrococcus caseolyticus JCSC5402 plasmid pMCCL2"; print " Macrococcus caseolyticus JCSC5402 plasmid pMCCL3"; print " Macrococcus caseolyticus JCSC5402 plasmid pMCCL4"; print " Macrococcus caseolyticus JCSC5402 plasmid pMCCL5"; print " Macrococcus caseolyticus JCSC5402 plasmid pMCCL6"; print " Macrococcus caseolyticus JCSC5402 plasmid pMCCL7"; print " Macrococcus caseolyticus JCSC5402 plasmid pMCCL8"; print " Macrococcus caseolyticus JCSC5402"; print " Magnetococcus sp. MC-1"; print " Magnetospirillum magneticum AMB-1"; print " Mannheimia succiniciproducens MBEL55E"; print " Maricaulis maris MCS10"; print " Marinobacter aquaeolei VT8 plasmid pMAQU01"; print " Marinobacter aquaeolei VT8 plasmid pMAQU02"; print " Marinobacter aquaeolei VT8"; print " Marinomonas sp. MWYL1"; print " Mesoplasma florum L1"; print " Mesorhizobium loti MAFF303099 plasmid pMLa"; print " Mesorhizobium loti MAFF303099 plasmid pMLb"; print " Mesorhizobium loti MAFF303099"; print " Mesorhizobium sp. BNC1 plasmid 1"; print " Mesorhizobium sp. BNC1 plasmid 2"; print " Mesorhizobium sp. BNC1 plasmid 3"; print " Mesorhizobium sp. BNC1"; print " Metallosphaera sedula DSM 5348"; print " Methanobrevibacter smithii ATCC 35061"; print " Methanocaldococcus jannaschii DSM 2661 extrachromosomal"; print " Methanocaldococcus jannaschii DSM 2661 extrachromosomal"; print " Methanocaldococcus jannaschii DSM 2661"; print " Methanococcoides burtonii DSM 6242"; print " Methanococcus aeolicus Nankai-3"; print " Methanococcus maripaludis C5 plasmid pMMC501"; print " Methanococcus maripaludis C5"; print " Methanococcus maripaludis C6"; print " Methanococcus maripaludis C7"; print " Methanococcus maripaludis S2"; print " Methanococcus vannielii SB"; print " Methanocorpusculum labreanum Z"; print " Methanoculleus marisnigri JR1"; print " Methanopyrus kandleri AV19"; print " Methanosaeta thermophila PT"; print " Methanosarcina acetivorans C2A"; print " Methanosarcina barkeri str. fusaro chromosome 1"; print " Methanosarcina barkeri str. fusaro plasmid 1"; print " Methanosarcina mazei Go1"; print " Methanosphaera stadtmanae DSM 3091"; print " Methanospirillum hungatei JF-1"; print " Methanothermobacter thermautotrophicus str. Delta H"; print " Methylacidiphilum infernorum V4"; print " Methylibium petroleiphilum PM1 plasmid RPME01"; print " Methylibium petroleiphilum PM1"; print " Methylobacillus flagellatus KT"; print " Methylobacterium chloromethanicum CM4 plasmid pMCHL01"; print " Methylobacterium chloromethanicum CM4 plasmid pMCHL02"; print " Methylobacterium chloromethanicum CM4"; print " Methylobacterium extorquens PA1"; print " Methylobacterium nodulans ORS 2060 plasmid pMNOD01"; print " Methylobacterium nodulans ORS 2060 plasmid pMNOD02"; print " Methylobacterium nodulans ORS 2060 plasmid pMNOD03"; print " Methylobacterium nodulans ORS 2060 plasmid pMNOD04"; print " Methylobacterium nodulans ORS 2060 plasmid pMNOD05"; print " Methylobacterium nodulans ORS 2060 plasmid pMNOD06"; print " Methylobacterium nodulans ORS 2060 plasmid pMNOD07"; print " Methylobacterium nodulans ORS 2060"; print " Methylobacterium populi BJ001 plasmid pMPOP01"; print " Methylobacterium populi BJ001 plasmid pMPOP02"; print " Methylobacterium populi BJ001"; print " Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01"; print " Methylobacterium radiotolerans JCM 2831 plasmid pMRAD02"; print " Methylobacterium radiotolerans JCM 2831 plasmid pMRAD03"; print " Methylobacterium radiotolerans JCM 2831 plasmid pMRAD04"; print " Methylobacterium radiotolerans JCM 2831 plasmid pMRAD05"; print " Methylobacterium radiotolerans JCM 2831 plasmid pMRAD06"; print " Methylobacterium radiotolerans JCM 2831 plasmid pMRAD07"; print " Methylobacterium radiotolerans JCM 2831 plasmid pMRAD08"; print " Methylobacterium radiotolerans JCM 2831"; print " Methylobacterium sp. 4-46 plasmid pM44601"; print " Methylobacterium sp. 4-46 plasmid pM44602"; print " Methylobacterium sp. 4-46"; print " Methylocella silvestris BL2"; print " Methylococcus capsulatus str. Bath"; print " Microcystis aeruginosa NIES-843"; print " Moorella thermoacetica ATCC 39073"; print " Mycobacterium abscessus chromosome 1"; print " Mycobacterium abscessus plasmid"; print " Mycobacterium avium 104"; print " Mycobacterium avium subsp. paratuberculosis K-10"; print " Mycobacterium bovis AF2122/97"; print " Mycobacterium bovis BCG str. Pasteur 1173P2"; print " Mycobacterium bovis BCG str. Tokyo 172"; print " Mycobacterium gilvum PYR-GCK plasmid pMFLV01"; print " Mycobacterium gilvum PYR-GCK plasmid pMFLV02"; print " Mycobacterium gilvum PYR-GCK plasmid pMFLV03"; print " Mycobacterium gilvum PYR-GCK"; print " Mycobacterium leprae Br4923"; print " Mycobacterium leprae TN"; print " Mycobacterium marinum M plasmid pMM23"; print " Mycobacterium marinum M"; print " Mycobacterium smegmatis str. MC2 155"; print " Mycobacterium sp. JLS"; print " Mycobacterium sp. KMS plasmid pMKMS01"; print " Mycobacterium sp. KMS plasmid pMKMS02"; print " Mycobacterium sp. KMS"; print " Mycobacterium sp. MCS plasmid1"; print " Mycobacterium sp. MCS"; print " Mycobacterium tuberculosis CDC1551"; print " Mycobacterium tuberculosis F11"; print " Mycobacterium tuberculosis H37Ra"; print " Mycobacterium tuberculosis H37Rv"; print " Mycobacterium ulcerans AGY99 plasmid pMUM001"; print " Mycobacterium ulcerans Agy99"; print " Mycobacterium vanbaalenii PYR-1"; print " Mycoplasma agalactiae PG2"; print " Mycoplasma arthritidis 158L3-1"; print " Mycoplasma capricolum subsp. capricolum ATCC 27343"; print " Mycoplasma gallisepticum R"; print " Mycoplasma genitalium G37"; print " Mycoplasma hyopneumoniae 232"; print " Mycoplasma hyopneumoniae 7448"; print " Mycoplasma hyopneumoniae J"; print " Mycoplasma mobile 163K"; print " Mycoplasma mycoides subsp. mycoides SC str. PG1"; print " Mycoplasma penetrans HF-2"; print " Mycoplasma pneumoniae M129"; print " Mycoplasma pulmonis UAB CTIP"; print " Mycoplasma synoviae 53"; print " Myxococcus xanthus DK 1622"; Viral Genome print " Macaca fuscata rhadinovirus"; print " Macacine herpesvirus 1"; print " Macacine herpesvirus 3"; print " Macacine herpesvirus 4"; print " Macacine herpesvirus 5"; print " Macaque simian foamy virus"; print " Machupo virus segment L"; print " Machupo virus segment S"; print " Macrobrachium rosenbergii nodavirus RNA-1"; print " Macrobrachium rosenbergii nodavirus RNA-2"; print " Macroptilium golden mosaic virus-[Jamaica:Wissadula:August Town] DNA A"; print " Macroptilium golden mosaic virus-[Jamaica:Wissadula:August Town] DNA B"; print " Macroptilium mosaic Puerto Rico virus DNA A"; print " Macroptilium mosaic Puerto Rico virus DNA B"; print " Macroptilium yellow mosaic Florida virus DNA A"; print " Macroptilium yellow mosaic Florida virus DNA B"; print " Macroptilium yellow mosaic virus DNA A"; print " Macroptilium yellow mosaic virus DNA B"; print " Magnaporthe oryzae virus 1"; print " Magnaporthe oryzae virus 2"; print " Maize chlorotic dwarf virus"; print " Maize chlorotic mottle virus"; print " Maize dwarf mosaic virus"; print " Maize fine streak virus"; print " Maize mosaic virus"; print " Maize necrotic streak virus"; print " Maize rayado fino virus"; print " Maize streak virus - A[South Africa]"; print " Maize white line mosaic virus"; print " Mal de Rio Cuarto virus segment 9"; print " Mal de Rio Cuarto virus segment S1"; print " Mal de Rio Cuarto virus segment S10"; print " Mal de Rio Cuarto virus segment S2"; print " Mal de Rio Cuarto virus segment S3"; print " Mal de Rio Cuarto virus segment S4"; print " Mal de Rio Cuarto virus segment S5"; print " Mal de Rio Cuarto virus segment S6"; print " Mal de Rio Cuarto virus segment S7"; print " Mal de Rio Cuarto virus segment S8"; print " Malachra yellow vein mosaic virus-associated satellite DNA beta"; print " Malvastrum leaf curl Guangdong virus"; print " Malvastrum leaf curl virus - [G87]"; print " Malvastrum leaf curl virus-associated DNA beta"; print " Malvastrum leaf curl virus-associated defective DNA beta"; print " Malvastrum yellow mosaic virus DNA-A"; print " Malvastrum yellow mosaic virus satellite DNA beta"; print " Malvastrum yellow mosaic virus-associated DNA 1"; print " Malvastrum yellow vein Yunnan virus satellite DNA beta"; print " Malvastrum yellow vein Yunnan virus"; print " Malvastrum yellow vein virus satellite DNA beta"; print " Malvastrum yellow vein virus"; print " Mamestra configurata NPV-A"; print " Mamestra configurata nucleopolyhedrovirus B"; print " Mammalian orthoreovirus 1 segment L1"; print " Mammalian orthoreovirus 1 segment L2"; print " Mammalian orthoreovirus 1 segment L3"; print " Mammalian orthoreovirus 1 segment M1"; print " Mammalian orthoreovirus 1 segment M2"; print " Mammalian orthoreovirus 1 segment M3"; print " Mammalian orthoreovirus 1 segment S1"; print " Mammalian orthoreovirus 1 segment S2"; print " Mammalian orthoreovirus 1 segment S3"; print " Mammalian orthoreovirus 1 segment S4"; print " Mammalian orthoreovirus 2 segment L1"; print " Mammalian orthoreovirus 2 segment L2"; print " Mammalian orthoreovirus 2 segment L3"; print " Mammalian orthoreovirus 2 segment M1"; print " Mammalian orthoreovirus 2 segment M2"; print " Mammalian orthoreovirus 2 segment M3"; print " Mammalian orthoreovirus 2 segment S1"; print " Mammalian orthoreovirus 2 segment S2"; print " Mammalian orthoreovirus 2 segment S3"; print " Mammalian orthoreovirus 2 segment S4"; print " Mammalian orthoreovirus 3 segment L1"; print " Mammalian orthoreovirus 3 segment L2"; print " Mammalian orthoreovirus 3 segment L3"; print " Mammalian orthoreovirus 3 segment M1"; print " Mammalian orthoreovirus 3 segment M2"; print " Mammalian orthoreovirus 3 segment M3"; print " Mammalian orthoreovirus 3 segment S1"; print " Mammalian orthoreovirus 3 segment S2"; print " Mammalian orthoreovirus 3 segment S3"; print " Mammalian orthoreovirus 3 segment S4"; print " Mannheimia phage phiMHaA1"; print " Mapuera virus"; print " Maracuja mosaic virus"; print " Marine RNA virus JP-A"; print " Marine RNA virus JP-B"; print " Marine RNA virus SOG"; print " Marine birnavirus segment A"; print " Marine birnavirus segment B"; print " Maruca vitrata MNPV"; print " Mason-Pfizer monkey virus"; print " Mastomys coucha papillomavirus 2"; print " Mayaro virus"; print " Measles virus"; print " Melanoplus sanguinipes entomopoxvirus"; print " Meleagrid herpesvirus 1"; print " Melon aphid-borne yellows virus"; print " Melon necrotic spot virus"; print " Melon yellow spot virus segment L"; print " Melon yellow spot virus segment M"; print " Melon yellow spot virus segment S"; print " Menangle virus"; print " Merkel cell polyomavirus"; print " Merremia mosaic virus DNA A"; print " Merremia mosaic virus DNA B"; print " Mesta yellow vein mosaic Bahraich virus-[India:Bahraich:2007] DNA A"; print " Mesta yellow vein mosaic virus DNA-A"; print " Mesta yellow vein mosaic virus-associated DNA beta"; print " Methanobacterium phage psiM2"; print " Methanothermobacter prophage psiM100"; print " Mexican papita viroid"; print " Mice minute virus"; print " Microbacterium phage Min1"; print " Microcystis phage Ma-LMM01"; print " Micromonas pusilla reovirus segment 1"; print " Micromonas pusilla reovirus segment 10"; print " Micromonas pusilla reovirus segment 11"; print " Micromonas pusilla reovirus segment 2"; print " Micromonas pusilla reovirus segment 3"; print " Micromonas pusilla reovirus segment 4"; print " Micromonas pusilla reovirus segment 5"; print " Micromonas pusilla reovirus segment 6"; print " Micromonas pusilla reovirus segment 7"; print " Micromonas pusilla reovirus segment 8"; print " Micromonas pusilla reovirus segment 9"; print " Microplitis demolitor bracovirus segment A"; print " Microplitis demolitor bracovirus segment B"; print " Microplitis demolitor bracovirus segment C"; print " Microplitis demolitor bracovirus segment D"; print " Microplitis demolitor bracovirus segment E"; print " Microplitis demolitor bracovirus segment F"; print " Microplitis demolitor bracovirus segment G"; print " Microplitis demolitor bracovirus segment H"; print " Microplitis demolitor bracovirus segment I"; print " Microplitis demolitor bracovirus segment J"; print " Microplitis demolitor bracovirus segment K"; print " Microplitis demolitor bracovirus segment L"; print " Microplitis demolitor bracovirus segment M"; print " Microplitis demolitor bracovirus segment N"; print " Microplitis demolitor bracovirus segment O"; print " Mikania micrantha wilt virus RNA 1"; print " Mikania micrantha wilt virus RNA 2"; print " Milk vetch dwarf virus segment 1"; print " Milk vetch dwarf virus segment 10"; print " Milk vetch dwarf virus segment 11"; print " Milk vetch dwarf virus segment 2"; print " Milk vetch dwarf virus segment 3"; print " Milk vetch dwarf virus segment 4"; print " Milk vetch dwarf virus segment 5"; print " Milk vetch dwarf virus segment 6"; print " Milk vetch dwarf virus segment 7"; print " Milk vetch dwarf virus segment 8"; print " Milk vetch dwarf virus segment 9"; print " Mimosa yellow leaf curl virus DNA-A"; print " Mimosa yellow leaf curl virus satellite DNA beta"; print " Mimosa yellow leaf curl virus-associated DNA 1"; print " Mink astrovirus"; print " Mint virus 1"; print " Mint virus X"; print " Mirabilis mosaic virus"; print " Mirafiore lettuce virus RNA 1"; print " Mirafiore lettuce virus RNA 2"; print " Mirafiore lettuce virus RNA 3"; print " Mirafiore lettuce virus RNA 4"; print " Miscanthus streak virus - [91]"; print " Mobala virus segment L"; print " Mobala virus segment S"; print " Modoc virus"; print " Mokola virus"; print " Molluscum contagiosum virus"; print " Moloney murine leukemia virus"; print " Moloney murine sarcoma virus"; print " Monkeypox virus Zaire-96-I-16"; print " Montana myotis leukoencephalitis virus"; print " Mopeia Lassa reassortant 29 segment L"; print " Mopeia Lassa reassortant 29 segment S"; print " Mopeia virus AN20410 segment L"; print " Mopeia virus AN20410 segment S"; print " Morganella phage MmP1"; print " Moroccan watermelon mosaic virus"; print " Mossman virus"; print " Mouse mammary tumor virus"; print " Mouse parvovirus 1"; print " Mouse parvovirus 2"; print " Mouse parvovirus 3"; print " Mouse parvovirus 4"; print " Mouse parvovirus 5"; print " Mulard duck circovirus"; print " Mulberry small circular viroid-like RNA 1"; print " Multimammate rat papillomavirus"; print " Mumps virus"; print " Mungbean yellow mosaic India virus DNA A"; print " Mungbean yellow mosaic India virus DNA B"; print " Mungbean yellow mosaic virus DNA A"; print " Mungbean yellow mosaic virus DNA B"; print " Munia coronavirus HKU13-3514"; print " Murid herpesvirus 1"; print " Murid herpesvirus 2"; print " Murid herpesvirus 4"; print " Murine adenovirus A"; print " Murine adenovirus A"; print " Murine hepatitis virus strain A59"; print " Murine hepatitis virus strain JHM"; print " Murine norovirus 1"; print " Murine osteosarcoma virus"; print " Murine pneumotropic virus"; print " Murine polyomavirus"; print " Murine type C retrovirus"; print " Murray Valley encephalitis virus"; print " Musca domestica salivary gland hypertrophy virus"; print " Muscovy duck circovirus"; print " Muscovy duck parvovirus"; print " Mushroom bacilliform virus"; print " Mycobacterium phage 244"; print " Mycobacterium phage Adjutor"; print " Mycobacterium phage BPs"; print " Mycobacterium phage Barnyard"; print " Mycobacterium phage Bethlehem"; print " Mycobacterium phage Boomer"; print " Mycobacterium phage Brujita"; print " Mycobacterium phage Butterscotch"; print " Mycobacterium phage Bxb1"; print " Mycobacterium phage Bxz1"; print " Mycobacterium phage Bxz2"; print " Mycobacterium phage Cali"; print " Mycobacterium phage Catera"; print " Mycobacterium phage Chah"; print " Mycobacterium phage Che12"; print " Mycobacterium phage Che8"; print " Mycobacterium phage Che9c"; print " Mycobacterium phage Che9d"; print " Mycobacterium phage Cjw1"; print " Mycobacterium phage Cooper"; print " Mycobacterium phage Corndog"; print " Mycobacterium phage D29"; print " Mycobacterium phage DD5"; print " Mycobacterium phage Fruitloop"; print " Mycobacterium phage Giles"; print " Mycobacterium phage Gumball"; print " Mycobacterium phage Halo"; print " Mycobacterium phage Jasper"; print " Mycobacterium phage KBG"; print " Mycobacterium phage Konstantine"; print " Mycobacterium phage Kostya"; print " Mycobacterium phage L5"; print " Mycobacterium phage Llij"; print " Mycobacterium phage Lockley"; print " Mycobacterium phage Myrna"; print " Mycobacterium phage Nigel"; print " Mycobacterium phage Omega"; print " Mycobacterium phage Orion"; print " Mycobacterium phage PBI1"; print " Mycobacterium phage PG1"; print " Mycobacterium phage PLot"; print " Mycobacterium phage PMC"; print " Mycobacterium phage Pacc40"; print " Mycobacterium phage Phaedrus"; print " Mycobacterium phage Phlyer"; print " Mycobacterium phage Pipefish"; print " Mycobacterium phage Porky"; print " Mycobacterium phage Predator"; print " Mycobacterium phage Pukovnik"; print " Mycobacterium phage Qyrzula"; print " Mycobacterium phage Ramsey"; print " Mycobacterium phage Rizal"; print " Mycobacterium phage Rosebush"; print " Mycobacterium phage ScottMcG"; print " Mycobacterium phage Solon"; print " Mycobacterium phage Spud"; print " Mycobacterium phage TM4"; print " Mycobacterium phage Troll4"; print " Mycobacterium phage Tweety"; print " Mycobacterium phage U2"; print " Mycobacterium phage Wildcat"; print " Mycoplasma phage MAV1"; print " Mycoplasma phage P1"; print " Mycoplasma phage phiMFV1"; print " Mycoreovirus 1 segment 1"; print " Mycoreovirus 1 segment 10"; print " Mycoreovirus 1 segment 11"; print " Mycoreovirus 1 segment 2"; print " Mycoreovirus 1 segment 3"; print " Mycoreovirus 1 segment 4"; print " Mycoreovirus 1 segment 5"; print " Mycoreovirus 1 segment 6"; print " Mycoreovirus 1 segment 7"; print " Mycoreovirus 1 segment 8"; print " Mycoreovirus 1 segment 9"; print " Mycoreovirus 3 segment 10"; print " Mycoreovirus 3 segment 11"; print " Mycoreovirus 3 segment 12"; print " Mycoreovirus 3 segment 6"; print " Mycoreovirus 3 segment 7"; print " Mycoreovirus 3 segment 8"; print " Mycoreovirus 3 segment 9"; print " Mycoreovirus 3 segment S1"; print " Mycoreovirus 3 segment S2"; print " Mycoreovirus 3 segment S3"; print " Mycoreovirus 3 segment S5"; print " Mycoreovirus 3 segment X"; print " Mycovirus FusoV RNA 1"; print " Mycovirus FusoV RNA 2"; print " Myotis polyomavirus VM-2008"; print " Mythimna loreyi densovirus"; print " Myxococcus phage Mx8"; print " Myxoma virus"; print " Myzus persicae densovirus";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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