IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: T

Select Genome:

Bacterial Genome print " Thauera sp. MZ1T plasmid pTha01"; print " Thermoanaerobacter pseudethanolicus ATCC 33223"; print " Thermoanaerobacter sp. X514"; print " Thermoanaerobacter tengcongensis MB4"; print " Thermobifida fusca YX"; print " Thermococcus kodakarensis KOD1"; print " Thermococcus onnurineus NA1"; print " Thermodesulfovibrio yellowstonii DSM 11347"; print " Thermofilum pendens Hrk 5 plasmid pTPEN01"; print " Thermofilum pendens Hrk 5"; print " Thermomicrobium roseum DSM 5159 plasmid unnamed"; print " Thermomicrobium roseum DSM 5159"; print " Thermoplasma acidophilum DSM 1728"; print " Thermoplasma volcanium GSS1"; print " Thermoproteus neutrophilus V24Sta"; print " Thermosipho africanus TCF52B"; print " Thermosipho melanesiensis BI429"; print " Thermosynechococcus elongatus BP-1"; print " Thermotoga lettingae TMO"; print " Thermotoga maritima MSB8"; print " Thermotoga neapolitana DSM 4359"; print " Thermotoga petrophila RKU-1"; print " Thermotoga sp. RQ2"; print " Thermus thermophilus HB27 plasmid pTT27"; print " Thermus thermophilus HB27"; print " Thermus thermophilus HB8 plasmid pTT27"; print " Thermus thermophilus HB8 plasmid pTT8"; print " Thermus thermophilus HB8"; print " Thioalkalivibrio sp. HL-EbGR7"; print " Thiobacillus denitrificans ATCC 25259"; print " Thiomicrospira crunogena XCL-2"; print " Treponema denticola ATCC 35405"; print " Treponema pallidum subsp. pallidum SS14"; print " Treponema pallidum subsp. pallidum str. Nichols"; print " Trichodesmium erythraeum IMS101"; print " Tropheryma whipplei TW08/27"; print " Tropheryma whipplei str. Twist"; Viral Genome print " TT virus"; print " TTV-like mini virus"; print " TYLCAxV-Sic1-[IT:Sic2/2:04]"; print " TYLCCNV-[Y322] satellite DNA beta virus"; print " Tacaribe virus segment L"; print " Tacaribe virus segment S"; print " Tamana bat virus"; print " Tamiami virus segment L"; print " Tamiami virus segment S"; print " Tanapox virus"; print " Taro bacilliform virus"; print " Taro vein chlorosis virus"; print " Taterapox virus"; print " Taura syndrome virus"; print " Telosma mosaic virus"; print " Temperate phage phiNIH1.1"; print " Thalassomonas phage BA3"; print " Theilovirus"; print " Thermoproteus tenax spherical virus 1"; print " Thermus phage IN93"; print " Thermus phage P23-45"; print " Thermus phage P74-26"; print " Thermus phage phiYS40"; print " Thielaviopsis basicola dsRNA virus 1"; print " Thogoto virus segment 1"; print " Thogoto virus segment 2"; print " Thogoto virus segment 3"; print " Thogoto virus segment 4"; print " Thogoto virus segment 5"; print " Thogoto virus segment 6"; print " Thottapalayam virus segment L"; print " Thottapalayam virus segment M"; print " Thottapalayam virus segment S"; print " Thrush coronavirus HKU12-600"; print " Thunberg fritillary virus"; print " Tick-borne encephalitis virus"; print " Tioman virus"; print " Tobacco bushy top virus isolate Baoshan satellite-like RNA"; print " Tobacco bushy top virus satellite-like RNA"; print " Tobacco bushy top virus"; print " Tobacco curly shoot virus associated DNA 1"; print " Tobacco curly shoot virus"; print " Tobacco curly shoot virus-associated DNA beta"; print " Tobacco etch virus"; print " Tobacco leaf curl Japan virus"; print " Tobacco leaf curl Kochi virus"; print " Tobacco leaf curl Thailand virus"; print " Tobacco leaf curl Yunnan virus - [Y136]"; print " Tobacco leaf curl Yunnan virus associated DNA 1"; print " Tobacco leaf curl Yunnan virus satellite DNA beta"; print " Tobacco leaf curl Zimbabwe virus"; print " Tobacco leaf curl disease associated sequence virion"; print " Tobacco mild green mosaic virus"; print " Tobacco mosaic virus"; print " Tobacco necrosis satellite virus"; print " Tobacco necrosis virus A"; print " Tobacco necrosis virus D"; print " Tobacco rattle virus RNA 1"; print " Tobacco rattle virus RNA 2"; print " Tobacco ringspot virus RNA 1"; print " Tobacco ringspot virus RNA 2"; print " Tobacco ringspot virus satellite RNA"; print " Tobacco streak virus RNA 1"; print " Tobacco streak virus RNA 2"; print " Tobacco streak virus RNA 3"; print " Tobacco vein banding mosaic virus"; print " Tobacco vein distorting virus"; print " Tobacco vein mottling virus"; print " Tobacco vein-clearing virus"; print " Tobacco yellow crinkle virus-[Capsicum:Cuba:2007] DNA-A"; print " Tobacco yellow dwarf virus"; print " Tomato apical stunt viroid"; print " Tomato aspermy virus RNA 1"; print " Tomato aspermy virus RNA 2"; print " Tomato aspermy virus RNA 3"; print " Tomato begomovirus satellite DNA beta"; print " Tomato black ring virus RNA 1"; print " Tomato black ring virus RNA 2"; print " Tomato black ring virus satellite RNA"; print " Tomato bushy stunt virus satellite RNA B1"; print " Tomato bushy stunt virus"; print " Tomato chino La Paz virus segment A"; print " Tomato chlorosis virus RNA 1"; print " Tomato chlorosis virus RNA 2"; print " Tomato chlorotic dwarf viroid"; print " Tomato chlorotic mottle virus DNA A"; print " Tomato chlorotic mottle virus DNA B"; print " Tomato common mosaic virus DNA-A"; print " Tomato common mosaic virus DNA-B"; print " Tomato curly stunt virus - [South Africa]"; print " Tomato golden mosaic virus DNA A"; print " Tomato golden mosaic virus DNA B"; print " Tomato golden mottle virus DNA A"; print " Tomato golden mottle virus DNA B"; print " Tomato leaf curl Arusha virus DNA-A"; print " Tomato leaf curl Bangalore virus"; print " Tomato leaf curl Bangalore virus-[Ban5] satellite DNA beta"; print " Tomato leaf curl Bangladesh virus"; print " Tomato leaf curl Cebu virus DNA-A"; print " Tomato leaf curl China virus - [G32]"; print " Tomato leaf curl China virus satellite DNA beta"; print " Tomato leaf curl Cotabato virus DNA-A"; print " Tomato leaf curl Guangdong virus DNA-A"; print " Tomato leaf curl Guangxi virus"; print " Tomato leaf curl Gujarat virus - [Varanasi] segment A"; print " Tomato leaf curl Gujarat virus - [Varanasi] segment B"; print " Tomato leaf curl Hsinchu virus - [Taiwan:Hsinchu:2005] DNA A"; print " Tomato leaf curl Iran virus"; print " Tomato leaf curl Java virus"; print " Tomato leaf curl Java virus-[Ageratum] satellite DNA"; print " Tomato leaf curl Joydebpur beta virus"; print " Tomato leaf curl Joydebpur virus DNA-A"; print " Tomato leaf curl Karnataka virus"; print " Tomato leaf curl Karnataka virus-associated DNA beta DNA-A"; print " Tomato leaf curl Kerala virus"; print " Tomato leaf curl Kerman virus-[Jiroft:cantaloupe] DNA A"; print " Tomato leaf curl Kerman virus-[Jiroft:cantaloupe] DNA B"; print " Tomato leaf curl Kumasi virus segment A"; print " Tomato leaf curl Laos virus"; print " Tomato leaf curl Madagascar virus"; print " Tomato leaf curl Malaysia virus"; print " Tomato leaf curl Mali virus"; print " Tomato leaf curl Mayotte virus"; print " Tomato leaf curl Mindanao virus DNA-A"; print " Tomato leaf curl New Delhi virus DNA A"; print " Tomato leaf curl New Delhi virus DNA B"; print " Tomato leaf curl New Delhi virus-associated DNA beta"; print " Tomato leaf curl Pakistan virus segment A"; print " Tomato leaf curl Palampur virus"; print " Tomato leaf curl Palampur virus"; print " Tomato leaf curl Philippine virus satellite DNA beta"; print " Tomato leaf curl Philippines virus"; print " Tomato leaf curl Pune virus"; print " Tomato leaf curl Seychelles virus"; print " Tomato leaf curl Sinaloa virus DNA A"; print " Tomato leaf curl Sinaloa virus DNA B"; print " Tomato leaf curl Sri Lanka virus"; print " Tomato leaf curl Sudan virus - [Gezira]"; print " Tomato leaf curl Taiwan virus"; print " Tomato leaf curl Vietnam virus"; print " Tomato leaf curl virus Ghana virus segment A"; print " Tomato leaf curl virus satellite DNA"; print " Tomato leaf curl virus"; print " Tomato leaf curl virus-Pune-associated DNA beta DNA-A"; print " Tomato leaf curl virus-associated DNA beta"; print " Tomato marchitez virus RNA 1"; print " Tomato marchitez virus RNA 2"; print " Tomato mild mosaic virus DNA-A"; print " Tomato mild mosaic virus DNA-B"; print " Tomato mild yellow leaf curl Aragua virus DNA A"; print " Tomato mild yellow leaf curl Aragua virus DNA B"; print " Tomato mosaic Havana virus DNA A"; print " Tomato mosaic Havana virus DNA B"; print " Tomato mosaic leaf curl virus DNA A"; print " Tomato mosaic leaf curl virus DNA B"; print " Tomato mosaic virus"; print " Tomato mottle Taino virus DNA A"; print " Tomato mottle Taino virus DNA B"; print " Tomato mottle virus DNA A"; print " Tomato mottle virus DNA B"; print " Tomato planta macho viroid"; print " Tomato pseudo-curly top virus"; print " Tomato ringspot virus RNA 1"; print " Tomato ringspot virus RNA 2"; print " Tomato rugose mosaic virus DNA A"; print " Tomato rugose mosaic virus DNA B"; print " Tomato severe leaf curl virus"; print " Tomato severe rugose virus DNA A"; print " Tomato severe rugose virus DNA B"; print " Tomato spotted wilt virus RNA L"; print " Tomato spotted wilt virus RNA M"; print " Tomato spotted wilt virus genomic RNA"; print " Tomato torrado virus RNA1"; print " Tomato torrado virus RNA2"; print " Tomato yellow dwarf disease associated satellite DNA beta-[Kochi] virus"; print " Tomato yellow leaf curl China virus associated DNA 1"; print " Tomato yellow leaf curl China virus satellite DNA beta"; print " Tomato yellow leaf curl China virus"; print " Tomato yellow leaf curl Guangdong virus DNA-A"; print " Tomato yellow leaf curl Indonesia virus-[Lembang]"; print " Tomato yellow leaf curl Kanchanaburi virus DNA A"; print " Tomato yellow leaf curl Kanchanaburi virus DNA B"; print " Tomato yellow leaf curl Malaga virus"; print " Tomato yellow leaf curl Mali virus-associated DNA beta"; print " Tomato yellow leaf curl Sardinia virus"; print " Tomato yellow leaf curl Thailand virus DNA A"; print " Tomato yellow leaf curl Thailand virus DNA B"; print " Tomato yellow leaf curl Thailand virus associated DNA 1"; print " Tomato yellow leaf curl Thailand virus satellite DNA beta"; print " Tomato yellow leaf curl Vietnam virus DNA-A"; print " Tomato yellow leaf curl Vietnam virus satellite DNA beta"; print " Tomato yellow leaf curl virus"; print " Tomato yellow leaf curl virus-associated DNA beta"; print " Tomato yellow margin leaf curl virus DNA A"; print " Tomato yellow margin leaf curl virus DNA B"; print " Tomato yellow spot virus DNA B"; print " Tomato yellow spot virus DNA-A"; print " Tomato yellow stunt virus"; print " Tomato yellow vein streak virus DNA A"; print " Tomato yellow vein streak virus DNA B"; print " Tomato zonate spot virus segment L"; print " Tomato zonate spot virus segment M"; print " Tomato zonate spot virus segment S"; print " Torque teno midi virus"; print " Toscana virus segment L"; print " Toscana virus segment M"; print " Toscana virus segment S"; print " Transmissible gastroenteritis virus"; print " Tree shrew adenovirus"; print " Triatoma virus"; print " Trichechus manatus latirostris papillomavirus type 1"; print " Trichomonas vaginalis virus 3"; print " Trichomonas vaginalis virus II"; print " Trichomonas vaginalis virus"; print " Trichoplusia ni SNPV virus"; print " Trichoplusia ni ascovirus 2c"; print " Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 1"; print " Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 10"; print " Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 11"; print " Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 2"; print " Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 3"; print " Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 4"; print " Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 5"; print " Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 6"; print " Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 7"; print " Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 8"; print " Trichoplusia ni cytoplasmic polyhedrosis virus 15 segment 9"; print " Tula virus segment L"; print " Tula virus segment M"; print " Tula virus segment S"; print " Tulare apple mosaic virus RNA1"; print " Tulare apple mosaic virus RNA2"; print " Tulare apple mosaic virus RNA3"; print " Tulip virus X"; print " Tupaia paramyxovirus"; print " Tupaia rhabdovirus"; print " Tupaiid herpesvirus 1"; print " Turkey adenovirus A"; print " Turkey adenovirus A"; print " Turkey astrovirus 2"; print " Turkey astrovirus"; print " Turkey coronavirus"; print " Turnip crinkle virus satellite RNA"; print " Turnip crinkle virus virulent satellite RNA C"; print " Turnip crinkle virus"; print " Turnip mosaic virus"; print " Turnip rosette virus"; print " Turnip vein-clearing virus"; print " Turnip yellow mosaic virus"; print " Turnip yellows virus"; print " Tursiops truncatus papillomavirus type 1"; print " Tursiops truncatus papillomavirus type 2"; print " Tursiops truncatus papillomavirus type 3";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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