IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: E

Select Genome:

Bacterial Genome print " Ehrlichia canis str. Jake"; print " Ehrlichia chaffeensis str. Arkansas"; print " Ehrlichia ruminantium str. Gardel"; print " Ehrlichia ruminantium str. Welgevonden"; print " Ehrlichia ruminantium str. Welgevonden"; print " Elusimicrobium minutum Pei191"; print " Enterobacter sakazakii ATCC BAA-894 plasmid pESA2"; print " Enterobacter sakazakii ATCC BAA-894 plasmid pESA3"; print " Enterobacter sakazakii ATCC BAA-894"; print " Enterobacter sp. 638 plasmid pENTE01"; print " Enterobacter sp. 638"; print " Enterococcus faecalis V583 plasmid pTEF1"; print " Enterococcus faecalis V583 plasmid pTEF2"; print " Enterococcus faecalis V583 plasmid pTEF3"; print " Enterococcus faecalis V583"; print " Erwinia carotovora subsp. atroseptica SCRI1043"; print " Erwinia tasmaniensis Et1/99 plasmid pET09"; print " Erwinia tasmaniensis Et1/99 plasmid pET35"; print " Erwinia tasmaniensis Et1/99 plasmid pET45"; print " Erwinia tasmaniensis Et1/99 plasmid pET46"; print " Erwinia tasmaniensis Et1/99 plasmid pET49"; print " Erwinia tasmaniensis Et1/99"; print " Erythrobacter litoralis HTCC2594"; print " Escherichia coli 536"; print " Escherichia coli 55989"; print " Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM"; print " Escherichia coli APEC O1 plasmid pAPEC-O1-R"; print " Escherichia coli APEC O1"; print " Escherichia coli ATCC 8739"; print " Escherichia coli CFT073"; print " Escherichia coli E24377A plasmid pETEC_35"; print " Escherichia coli E24377A plasmid pETEC_5"; print " Escherichia coli E24377A plasmid pETEC_6"; print " Escherichia coli E24377A plasmid pETEC_73"; print " Escherichia coli E24377A plasmid pETEC_74"; print " Escherichia coli E24377A plasmid pETEC_80"; print " Escherichia coli E24377A"; print " Escherichia coli ED1a"; print " Escherichia coli HS"; print " Escherichia coli IAI1"; print " Escherichia coli IAI39"; print " Escherichia coli O127:H6 str. E2348/69 plasmid pE2348-2"; print " Escherichia coli O127:H6 str. E2348/69 plasmid pMAR2"; print " Escherichia coli O127:H6 str. E2348/69"; print " Escherichia coli O157:H7 EDL933 plasmid pO157"; print " Escherichia coli O157:H7 EDL933"; print " Escherichia coli O157:H7 str. EC4115 plasmid pEC4115"; print " Escherichia coli O157:H7 str. EC4115 plasmid pO157"; print " Escherichia coli O157:H7 str. EC4115"; print " Escherichia coli O157:H7 str. Sakai plasmid pO157"; print " Escherichia coli O157:H7 str. Sakai plasmid pOSAK1"; print " Escherichia coli O157:H7 str. Sakai"; print " Escherichia coli S88"; print " Escherichia coli SE11 plasmid pSE11-1"; print " Escherichia coli SE11 plasmid pSE11-2"; print " Escherichia coli SE11 plasmid pSE11-3"; print " Escherichia coli SE11 plasmid pSE11-4"; print " Escherichia coli SE11 plasmid pSE11-5"; print " Escherichia coli SE11 plasmid pSE11-6"; print " Escherichia coli SE11"; print " Escherichia coli SMS-3-5 plasmid pSMS35_130"; print " Escherichia coli SMS-3-5 plasmid pSMS35_3"; print " Escherichia coli SMS-3-5 plasmid pSMS35_4"; print " Escherichia coli SMS-3-5 plasmid pSMS35_8"; print " Escherichia coli SMS-3-5"; print " Escherichia coli UMN026 plasmid p1ESCUM"; print " Escherichia coli UMN026"; print " Escherichia coli UTI89 plasmid pUTI89"; print " Escherichia coli UTI89"; print " Escherichia coli str. K-12 substr. DH10B"; print " Escherichia coli str. K-12 substr. MG1655"; print " Escherichia coli str. K-12 substr. W3110"; print " Escherichia fergusonii ATCC 35469 plasmid pEFER"; print " Escherichia fergusonii ATCC 35469"; print " Exiguobacterium sibiricum 255-15 plasmid pEXIG01"; print " Exiguobacterium sibiricum 255-15 plasmid pEXIG02"; print " Exiguobacterium sibiricum 255-15"; Viral Genome print " East African cassava mosaic Cameroon virus DNA A"; print " East African cassava mosaic Cameroon virus DNA B"; print " East African cassava mosaic Kenya virus DNA A"; print " East African cassava mosaic Kenya virus DNA B"; print " East African cassava mosaic Zanzibar virus DNA B"; print " East African cassava mosaic Zanzibar virus DNA-A"; print " East African cassava mosaic virus DNA A"; print " East African cassava mosaic virus DNA B"; print " East Asian Passiflora virus"; print " Eastern equine encephalitis virus"; print " Ecotropis obliqua NPV"; print " Ectocarpus siliculosus virus 1"; print " Ectromelia virus"; print " Ectropis obliqua picorna-like virus"; print " Eggplant latent viroid"; print " Eggplant mosaic virus"; print " Eimeria brunetti RNA virus 1"; print " Elm mottle virus RNA 1"; print " Elm mottle virus RNA 2"; print " Elm mottle virus RNA 3"; print " Emilia yellow vein virus-[Fz1]"; print " Emiliania huxleyi virus 86"; print " Encephalomyocarditis virus"; print " Entebbe bat virus"; print " Enterobacteria phage 13a"; print " Enterobacteria phage 933W"; print " Enterobacteria phage BA14"; print " Enterobacteria phage BP-4795"; print " Enterobacteria phage EPS7"; print " Enterobacteria phage ES18"; print " Enterobacteria phage EcoDS1"; print " Enterobacteria phage FI"; print " Enterobacteria phage Felix 01"; print " Enterobacteria phage Fels-2"; print " Enterobacteria phage G4"; print " Enterobacteria phage GA"; print " Enterobacteria phage HK022"; print " Enterobacteria phage HK620"; print " Enterobacteria phage HK97"; print " Enterobacteria phage I2-2"; print " Enterobacteria phage ID18"; print " Enterobacteria phage ID2 Moscow/ID/2001"; print " Enterobacteria phage If1"; print " Enterobacteria phage Ike"; print " Enterobacteria phage JK06"; print " Enterobacteria phage JS98"; print " Enterobacteria phage K1-5"; print " Enterobacteria phage K1E"; print " Enterobacteria phage K1F"; print " Enterobacteria phage M13"; print " Enterobacteria phage Min27"; print " Enterobacteria phage Mu"; print " Enterobacteria phage N15"; print " Enterobacteria phage N4"; print " Enterobacteria phage P1"; print " Enterobacteria phage P2"; print " Enterobacteria phage P22 virus"; print " Enterobacteria phage P4"; print " Enterobacteria phage PRD1"; print " Enterobacteria phage Phi1"; print " Enterobacteria phage PsP3"; print " Enterobacteria phage Qbeta"; print " Enterobacteria phage RB32"; print " Enterobacteria phage RB43"; print " Enterobacteria phage RB49"; print " Enterobacteria phage RB69"; print " Enterobacteria phage RTP"; print " Enterobacteria phage SP6"; print " Enterobacteria phage ST104"; print " Enterobacteria phage ST64T"; print " Enterobacteria phage Sf6"; print " Enterobacteria phage SfV"; print " Enterobacteria phage T1"; print " Enterobacteria phage T3"; print " Enterobacteria phage T4"; print " Enterobacteria phage T5"; print " Enterobacteria phage T7"; print " Enterobacteria phage TLS"; print " Enterobacteria phage VT2-Sakai"; print " Enterobacteria phage WA13"; print " Enterobacteria phage YYZ-2008"; print " Enterobacteria phage alpha3"; print " Enterobacteria phage epsilon15"; print " Enterobacteria phage lambda"; print " Enterobacteria phage phiEco32"; print " Enterobacteria phage phiEcoM-GJ1"; print " Enterobacteria phage phiP27"; print " Enterobacteria phage phiV10"; print " Enterobacteria phage phiX174"; print " Enterobacterio phage MS2"; print " Enterococcus phage phiEF24C"; print " Enzootic nasal tumour virus of goats"; print " Epinephelus tauvina nervous necrosis virus RNA 1"; print " Epinephelus tauvina nervous necrosis virus RNA 2"; print " Epiphyas postvittana NPV"; print " Epirus cherry virus RNA 1"; print " Epirus cherry virus RNA 2"; print " Epirus cherry virus RNA 3"; print " Equid herpesvirus 1"; print " Equid herpesvirus 2"; print " Equid herpesvirus 4"; print " Equid herpesvirus 9"; print " Equine arteritis virus"; print " Equine coronavirus"; print " Equine foamy virus"; print " Equine infectious anemia virus"; print " Equine papillomavirus 2"; print " Equine rhinitis A virus"; print " Equine rhinitis B virus 1"; print " Equine rhinovirus 3"; print " Equinus papillomavirus"; print " Equus caballus papillomavirus - 1"; print " Eragrostis streak virus"; print " Erectites yellow mosaic virus DNA-A"; print " Erectites yellow mosaic virus satellite DNA beta"; print " Erethizon dorsatum papillomavirus type 1"; print " Erinaceus europaeus papillomavirus"; print " Erwinia amylovora phage Era103"; print " Erwinia phage phiEa21-4"; print " Erysimum latent virus"; print " Escherichia phage rv5"; print " Eupatorium vein clearing virus"; print " Eupatorium yellow vein virus"; print " Eupatorium yellow vein virus-associated DNA beta"; print " Euphorbia leaf curl virus DNA A"; print " Euphorbia mosaic virus-Yucatan Peninsula DNA A"; print " Euphorbia mosaic virus-Yucatan Peninsula DNA B"; print " Euprosterna elaeasa virus"; print " European bat lyssavirus 1"; print " European bat lyssavirus 2"; print " European brown hare syndrome virus"; print " European elk papillomavirus"; print " Eyach virus segment 1"; print " Eyach virus segment 10"; print " Eyach virus segment 11"; print " Eyach virus segment 12"; print " Eyach virus segment 2"; print " Eyach virus segment 3"; print " Eyach virus segment 4"; print " Eyach virus segment 5"; print " Eyach virus segment 6"; print " Eyach virus segment 7"; print " Eyach virus segment 8"; print " Eyach virus segment 9";

Enter your e-mail id: (Optional)

Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

© Copyright 2006 All Rights Reserved www.cdfd.org.in