IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: X

Select Genome:

Bacterial Genome print " Xanthobacter autotrophicus Py2 plasmid pXAUT01"; print " Xanthobacter autotrophicus Py2"; print " Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC33"; print " Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC64"; print " Xanthomonas axonopodis pv. citri str. 306"; print " Xanthomonas campestris pv. campestris str. 8004"; print " Xanthomonas campestris pv. campestris str. ATCC 33913"; print " Xanthomonas campestris pv. campestris"; print " Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183"; print " Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV19"; print " Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV2"; print " Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV38"; print " Xanthomonas campestris pv. vesicatoria str. 85-10"; print " Xanthomonas oryzae pv. oryzae KACC10331"; print " Xanthomonas oryzae pv. oryzae MAFF 311018"; print " Xanthomonas oryzae pv. oryzae PXO99A"; print " Xylella fastidiosa 9a5c plasmid pXF1.3"; print " Xylella fastidiosa 9a5c plasmid pXF51"; print " Xylella fastidiosa 9a5c"; print " Xylella fastidiosa M12"; print " Xylella fastidiosa M23 plasmid pXFAS01"; print " Xylella fastidiosa M23"; print " Xylella fastidiosa Temecula1 plasmid pXFPD1.3"; print " Xylella fastidiosa Temecula1"; Viral Genome print " Xanthomonas phage Cf1c"; print " Xanthomonas phage OP1"; print " Xanthomonas phage OP2"; print " Xanthomonas phage Xop411"; print " Xanthomonas phage Xp10"; print " Xanthomonas phage Xp15"; print " Xenopus laevis endogenous retrovirus Xen1"; print " Xenotropic MuLV-related virus VP62"; print " Xestia c-nigrum granulovirus";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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