IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: K

Select Genome:

Bacterial Genome print " Kineococcus radiotolerans SRS30216 plasmid pKRAD01"; print " Kineococcus radiotolerans SRS30216 plasmid pKRAD02"; print " Kineococcus radiotolerans SRS30216"; print " Klebsiella pneumoniae 342 plasmid pKP187"; print " Klebsiella pneumoniae 342 plasmid pKP91"; print " Klebsiella pneumoniae 342"; print " Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3"; print " Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN4"; print " Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5"; print " Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN6"; print " Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN7"; print " Klebsiella pneumoniae subsp. pneumoniae MGH 78578"; print " Kocuria rhizophila DC2201"; Viral Genome print " KI polyomavirus Stockholm 60"; print " Kadipiro virus chromosome segment 1"; print " Kadipiro virus segment 10"; print " Kadipiro virus segment 11"; print " Kadipiro virus segment 12"; print " Kadipiro virus segment 2"; print " Kadipiro virus segment 3"; print " Kadipiro virus segment 4"; print " Kadipiro virus segment 5"; print " Kadipiro virus segment 6"; print " Kadipiro virus segment 7"; print " Kadipiro virus segment 8"; print " Kadipiro virus segment 9"; print " Kakugo virus"; print " Kalanchoe top-spotting virus"; print " Kamiti River virus"; print " Karshi virus"; print " Kashmir bee virus"; print " Kelp fly virus"; print " Kenaf leaf curl virus-[India:2007] DNA A"; print " Kennedya yellow mosaic virus"; print " Klebsiella phage K11"; print " Klebsiella phage phiKO2"; print " Kluyvera phage Kvp1"; print " Kokobera virus"; print " Konjac mosaic virus"; print " Kudzu mosaic virus DNA-A"; print " Kudzu mosaic virus DNA-B"; print " Kyuri green mottle mosaic virus";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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