IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: V

Select Genome:

Bacterial Genome print " Verminephrobacter eiseniae EF01-2 plasmid pVEIS01"; print " Verminephrobacter eiseniae EF01-2"; print " Vibrio cholerae O1 biovar eltor str. N16961 chromosome I"; print " Vibrio cholerae O1 biovar eltor str. N16961 chromosome II"; print " Vibrio cholerae O395 chromosome 1"; print " Vibrio cholerae O395 chromosome 2"; print " Vibrio fischeri ES114 chromosome I"; print " Vibrio fischeri ES114 chromosome II"; print " Vibrio fischeri ES114 plasmid pES100"; print " Vibrio fischeri MJ11 chromosome I"; print " Vibrio fischeri MJ11 chromosome II"; print " Vibrio fischeri MJ11 plasmid pMJ100"; print " Vibrio harveyi ATCC BAA-1116 chromosome I"; print " Vibrio harveyi ATCC BAA-1116 chromosome II"; print " Vibrio harveyi ATCC BAA-1116 plasmid pVIBHAR"; print " Vibrio parahaemolyticus RIMD 2210633 chromosome I"; print " Vibrio parahaemolyticus RIMD 2210633 chromosome II"; print " Vibrio splendidus LGP32 chromosome 1"; print " Vibrio splendidus LGP32 chromosome 2"; print " Vibrio vulnificus CMCP6 chromosome I"; print " Vibrio vulnificus CMCP6 chromosome II"; print " Vibrio vulnificus YJ016 chromosome I"; print " Vibrio vulnificus YJ016 chromosome II"; print " Vibrio vulnificus YJ016 plasmid pYJ016"; Viral Genome print " UR2 sarcoma virus"; print " Urochloa streak virus"; print " Ursus maritimus papillomavirus type 1"; print " Ustilago maydis virus H1"; print " Usutu virus"; print " Uukuniemi virus segment L"; print " Uukuniemi virus segment M"; print " Uukuniemi virus segment S"; print " Vaccinia virus"; print " Variola virus"; print " Varroa destructor virus 1"; print " Velvet tobacco mottle virus Satellite RNA"; print " Venezuelan equine encephalitis virus"; print " Verbena virus Y"; print " Vernonia yellow vein virus DNA-A"; print " Vesicular exanthema of swine virus"; print " Vesicular stomatitis Indiana virus"; print " Vibrio phage K139"; print " Vibrio phage KSF-1phi"; print " Vibrio phage KVP40"; print " Vibrio phage VGJphi"; print " Vibrio phage VHML"; print " Vibrio phage VP2"; print " Vibrio phage VP5"; print " Vibrio phage VP882"; print " Vibrio phage VSK"; print " Vibrio phage Vf12"; print " Vibrio phage Vf33"; print " Vibrio phage VfO3K6"; print " Vibrio phage VfO4K68"; print " Vibrio phage fs1"; print " Vibrio phage fs2"; print " Vibrio phage kappa"; print " Vibriophage VP4"; print " Vibriophage VpV262"; print " Vicia cryptic virus RNA1"; print " Vicia cryptic virus RNA2"; print " Vicia faba endornavirus"; print " Viral hemorrhagic septicemia virus"; print " Visna/Maedi virus";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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