IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: U

Select Genome:

Bacterial Genome print " Uncultured Termite group 1 bacterium phylotype Rs-D17 plasmid pTGRD1 DNA"; print " Uncultured Termite group 1 bacterium phylotype Rs-D17 plasmid pTGRD2 DNA"; print " Uncultured Termite group 1 bacterium phylotype Rs-D17 plasmid pTGRD3 DNA"; print " Uncultured Termite group 1 bacterium phylotype Rs-D17"; print " Uncultured methanogenic archaeon RC-I"; print " Ureaplasma parvum serovar 3 str. ATCC 27815"; print " Ureaplasma parvum serovar 3 str. ATCC 700970"; print " Ureaplasma urealyticum serovar 10 str. ATCC 33699"; Viral Genome

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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