IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: J

Select Genome:

Bacterial Genome print " Jannaschia sp. CCS1 plasmid1"; print " Jannaschia sp. CCS1"; print " Janthinobacterium sp. Marseille"; Viral Genome print " J-virus"; print " JC polyomavirus"; print " Japanese encephalitis virus"; print " Japanese iris necrotic ring virus"; print " Japanese yam mosaic virus"; print " Jatropha leaf curl virus DNA A"; print " Jatropha yellow mosaic India virus DNA-A"; print " Johnsongrass chlorotic stripe mosaic virus"; print " Johnsongrass mosaic virus"; print " Junin virus segment L"; print " Junin virus segment S"; print " Junonia coenia densovirus";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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