IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: F

Select Genome:

Bacterial Genome print " Fervidobacterium nodosum Rt17-B1"; print " Finegoldia magna ATCC 29328 plasmid pFMC"; print " Finegoldia magna ATCC 29328"; print " Flavobacterium johnsoniae UW101"; print " Flavobacterium psychrophilum JIP02/86"; print " Francisella philomiragia subsp. philomiragia ATCC 25017 plasmid pFPHI01"; print " Francisella philomiragia subsp. philomiragia ATCC 25017"; print " Francisella tularensis subsp. holarctica FTNF002-00"; print " Francisella tularensis subsp. holarctica OSU18"; print " Francisella tularensis subsp. holarctica"; print " Francisella tularensis subsp. mediasiatica FSC147"; print " Francisella tularensis subsp. novicida U112"; print " Francisella tularensis subsp. tularensis FSC198"; print " Francisella tularensis subsp. tularensis Schu 4"; print " Francisella tularensis subsp. tularensis WY96-3418"; print " Frankia alni ACN14a"; print " Frankia sp. CcI3"; print " Frankia sp. EAN1pec"; print " Fusobacterium nucleatum subsp. nucleatum ATCC 25586"; Viral Genome print " Faba bean necrotic yellows virus DNA 1"; print " Faba bean necrotic yellows virus DNA 10"; print " Faba bean necrotic yellows virus DNA 2"; print " Faba bean necrotic yellows virus DNA 4"; print " Faba bean necrotic yellows virus DNA 5"; print " Faba bean necrotic yellows virus DNA 7"; print " Faba bean necrotic yellows virus DNA 8"; print " Faba bean necrotic yellows virus DNA 9"; print " Faba bean necrotic yellows virus"; print " Faba bean necrotic yellows virus"; print " Feldmannia species virus"; print " Feline calicivirus"; print " Feline coronavirus"; print " Feline foamy virus"; print " Feline immunodeficiency virus"; print " Feline leukemia virus"; print " Feline papillomavirus"; print " Fer-de-lance virus"; print " Figwort mosaic virus"; print " Fiji disease virus segment 1"; print " Fiji disease virus segment 10"; print " Fiji disease virus segment 2"; print " Fiji disease virus segment 3"; print " Fiji disease virus segment 4"; print " Fiji disease virus segment 5"; print " Fiji disease virus segment 6"; print " Fiji disease virus segment 7"; print " Fiji disease virus segment 8"; print " Fiji disease virus segment 9"; print " Finch circovirus"; print " Finch polyomavirus"; print " Flavobacterium phage 11b"; print " Flexal virus segment L"; print " Flexal virus segment S"; print " Flock house virus RNA 1"; print " Flock house virus RNA 2"; print " Foot-and-mouth disease virus - type C"; print " Foot-and-mouth disease virus - type O"; print " Foot-and-mouth disease virus A"; print " Foot-and-mouth disease virus Asia 1"; print " Foot-and-mouth disease virus SAT 1"; print " Foot-and-mouth disease virus SAT 2"; print " Foot-and-mouth disease virus SAT 3"; print " Fowl adenovirus A"; print " Fowl adenovirus A"; print " Fowl adenovirus D"; print " Fowl adenovirus D"; print " Fowlpox virus"; print " Foxtail mosaic virus"; print " Fragaria chiloensis cryptic virus RNA 1"; print " Fragaria chiloensis cryptic virus RNA 2"; print " Fragaria chiloensis cryptic virus RNA 3"; print " Fragaria chiloensis latent virus RNA 1"; print " Fragaria chiloensis latent virus RNA 2"; print " Fragaria chiloensis latent virus RNA 3"; print " Friend murine leukemia virus"; print " Fringilla coelebs papillomavirus"; print " Fritillary virus Y"; print " Frog adenovirus"; print " Frog virus 3"; print " Fujinami sarcoma virus"; print " Fusarium graminearum dsRNA mycovirus-1"; print " Fusarium poae virus 1 RNA 1"; print " Fusarium poae virus 1 RNA 2";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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