IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: P

Select Genome:

Bacterial Genome print " Parabacteroides distasonis ATCC 8503"; print " Paracoccus denitrificans PD1222 chromosome 1"; print " Paracoccus denitrificans PD1222 chromosome 2"; print " Paracoccus denitrificans PD1222 plasmid 1"; print " Parvibaculum lavamentivorans DS-1"; print " Pasteurella multocida subsp. multocida str. Pm70"; print " Pediococcus pentosaceus ATCC 25745"; print " Pelobacter carbinolicus DSM 2380"; print " Pelobacter propionicus DSM 2379 plasmid pPRO1"; print " Pelobacter propionicus DSM 2379 plasmid pPRO2"; print " Pelobacter propionicus DSM 2379"; print " Pelodictyon luteolum DSM 273"; print " Pelodictyon phaeoclathratiforme BU-1"; print " Pelotomaculum thermopropionicum SI"; print " Persephonella marina EX-H1 plasmid unnamed"; print " Persephonella marina EX-H1"; print " Petrotoga mobilis SJ95"; print " Phenylobacterium zucineum HLK1 plasmid unnamed"; print " Phenylobacterium zucineum HLK1"; print " Photobacterium profundum SS9 chromosome 1"; print " Photobacterium profundum SS9 chromosome 2"; print " Photobacterium profundum SS9 plasmid pPBPR1"; print " Photorhabdus luminescens subsp. laumondii TTO1"; print " Picrophilus torridus DSM 9790"; print " Polaromonas naphthalenivorans CJ2 plasmid pPNAP01"; print " Polaromonas naphthalenivorans CJ2 plasmid pPNAP02"; print " Polaromonas naphthalenivorans CJ2 plasmid pPNAP03"; print " Polaromonas naphthalenivorans CJ2 plasmid pPNAP04"; print " Polaromonas naphthalenivorans CJ2 plasmid pPNAP05"; print " Polaromonas naphthalenivorans CJ2 plasmid pPNAP06"; print " Polaromonas naphthalenivorans CJ2 plasmid pPNAP07"; print " Polaromonas naphthalenivorans CJ2 plasmid pPNAP08"; print " Polaromonas naphthalenivorans CJ2"; print " Polaromonas sp. JS666 plasmid 1"; print " Polaromonas sp. JS666 plasmid 2"; print " Polaromonas sp. JS666"; print " Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1"; print " Polynucleobacter necessarius subsp. necessarius STIR1"; print " Porphyromonas gingivalis ATCC 33277"; print " Porphyromonas gingivalis W83"; print " Prochlorococcus marinus str. AS9601"; print " Prochlorococcus marinus str. MIT 9211"; print " Prochlorococcus marinus str. MIT 9215"; print " Prochlorococcus marinus str. MIT 9301"; print " Prochlorococcus marinus str. MIT 9303"; print " Prochlorococcus marinus str. MIT 9312"; print " Prochlorococcus marinus str. MIT 9313"; print " Prochlorococcus marinus str. MIT 9515"; print " Prochlorococcus marinus str. NATL1A"; print " Prochlorococcus marinus str. NATL2A"; print " Prochlorococcus marinus subsp. marinus str. CCMP1375"; print " Prochlorococcus marinus subsp. pastoris str. CCMP1986"; print " Propionibacterium acnes KPA171202"; print " Prosthecochloris aestuarii DSM 271 plasmid pPAES01"; print " Prosthecochloris aestuarii DSM 271"; print " Prosthecochloris vibrioformis DSM 265"; print " Proteus mirabilis HI4320"; print " Proteus mirabilis plasmid pHI4320"; print " Pseudoalteromonas atlantica T6c"; print " Pseudoalteromonas haloplanktis TAC125 chromosome I"; print " Pseudoalteromonas haloplanktis TAC125 chromosome II"; print " Pseudomonas aeruginosa LESB58"; print " Pseudomonas aeruginosa PA7"; print " Pseudomonas aeruginosa PAO1"; print " Pseudomonas aeruginosa UCBPP-PA14"; print " Pseudomonas entomophila L48"; print " Pseudomonas fluorescens Pf-5"; print " Pseudomonas fluorescens Pf0-1"; print " Pseudomonas mendocina ymp"; print " Pseudomonas putida F1"; print " Pseudomonas putida GB-1"; print " Pseudomonas putida KT2440"; print " Pseudomonas putida W619"; print " Pseudomonas stutzeri A1501"; print " Pseudomonas syringae pv. phaseolicola 1448A large plasmid"; print " Pseudomonas syringae pv. phaseolicola 1448A small plasmid"; print " Pseudomonas syringae pv. phaseolicola 1448A"; print " Pseudomonas syringae pv. syringae B728a"; print " Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A"; print " Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B"; print " Pseudomonas syringae pv. tomato str. DC3000"; print " Psychrobacter arcticus 273-4"; print " Psychrobacter cryohalolentis K5 plasmid 1"; print " Psychrobacter cryohalolentis K5"; print " Psychrobacter sp. PRwf-1 plasmid pRWF101"; print " Psychrobacter sp. PRwf-1 plasmid pRWF102"; print " Psychrobacter sp. PRwf-1"; print " Psychromonas ingrahamii 37"; print " Pyrobaculum aerophilum str. IM2"; print " Pyrobaculum arsenaticum DSM 13514"; print " Pyrobaculum calidifontis JCM 11548"; print " Pyrobaculum islandicum DSM 4184"; print " Pyrococcus abyssi GE5 plasmid pGT5"; print " Pyrococcus abyssi GE5"; print " Pyrococcus furiosus DSM 3638"; print " Pyrococcus horikoshii OT3"; Viral Genome print " Panicum mosaic satellite virus"; print " Panicum mosaic virus"; print " Panicum streak virus - Karino"; print " Panine herpesvirus 2"; print " Papaya leaf curl China virus - [G8]"; print " Papaya leaf curl China virus satellite DNA beta"; print " Papaya leaf curl Guandong virus - [GD2] DNA A"; print " Papaya leaf curl virus"; print " Papaya leaf curl virus-associated DNA beta"; print " Papaya leaf-distortion mosaic potyvirus"; print " Papaya mosaic virus"; print " Papaya ringspot virus"; print " Papiine herpesvirus 2"; print " Paprika mild mottle virus"; print " Paralichthys olivaceus birnavirus segment A"; print " Paralichthys olivaceus birnavirus segment B"; print " Paramecium bursaria Chlorella virus 1"; print " Paramecium bursaria Chlorella virus AR158"; print " Paramecium bursaria Chlorella virus FR483"; print " Paramecium bursaria Chlorella virus NY2A"; print " Parana virus segment L"; print " Parana virus segment S"; print " Pariacoto virus RNA1"; print " Pariacoto virus RNA2"; print " Parietaria mottle virus RNA 1"; print " Parietaria mottle virus RNA 2"; print " Parietaria mottle virus RNA 3"; print " Parsnip yellow fleck virus"; print " Parvovirus H1"; print " Passiflora latent carlavirus"; print " Pasteurella phage F108"; print " Patchouli mild mosaic virus RNA 1"; print " Patchouli mild mosaic virus RNA 2"; print " Pea early browning virus RNA 1"; print " Pea early browning virus RNA 2"; print " Pea enation mosaic virus satellite RNA"; print " Pea enation mosaic virus-1"; print " Pea enation mosaic virus-2"; print " Pea seed-borne mosaic virus"; print " Pea stem necrosis virus"; print " Peach chlorotic mottle virus"; print " Peach latent mosaic viroid"; print " Peach mosaic virus"; print " Peanut chlorotic streak virus"; print " Peanut clump virus RNA 1"; print " Peanut clump virus RNA 2"; print " Peanut mottle virus"; print " Peanut stunt virus RNA 1"; print " Peanut stunt virus RNA 2"; print " Peanut stunt virus RNA 3"; print " Peanut stunt virus satellite RNA"; print " Pear blister canker viroid"; print " Pear latent virus"; print " Pedilanthus leaf curl virus-Pedilanthus [Pakistan:Multan:2004]"; print " Pelargonium chlorotic ring pattern virus"; print " Pelargonium flower break virus"; print " Pelargonium line pattern virus"; print " Pelargonium necrotic spot virus"; print " Pelargonium zonate spot virus RNA 1"; print " Pelargonium zonate spot virus RNA 2"; print " Pelargonium zonate spot virus RNA 3"; print " Penaeid shrimp infectious myonecrosis virus"; print " Penaeus monodon hepatopancreatic parvovirus"; print " Penicillium chrysogenum virus segment 1"; print " Penicillium chrysogenum virus segment 2"; print " Penicillium chrysogenum virus segment 3"; print " Penicillium chrysogenum virus segment 4"; print " Penicillium stoloniferum virus F segment 1"; print " Penicillium stoloniferum virus F segment 2"; print " Penicillium stoloniferum virus F segment 3"; print " Penicillium stoloniferum virus S segment 1"; print " Penicillium stoloniferum virus S segment 2"; print " Pennisetum mosaic virus"; print " Penstemon ringspot virus"; print " Pepino mosaic virus"; print " Pepper chat fruit viroid"; print " Pepper curly top virus"; print " Pepper golden mosaic virus DNA A"; print " Pepper golden mosaic virus DNA B"; print " Pepper huasteco yellow vein virus DNA A"; print " Pepper huasteco yellow vein virus DNA B"; print " Pepper leaf curl Bangladesh virus segment A component"; print " Pepper leaf curl Yunnan virus satellite DNA beta"; print " Pepper leaf curl Yunnan virus-[YN323]"; print " Pepper leaf curl virus DNA-A"; print " Pepper leaf curl virus satellite DNA beta"; print " Pepper mild mottle virus"; print " Pepper mottle virus"; print " Pepper ringspot virus RNA 1"; print " Pepper ringspot virus RNA 2"; print " Pepper severe mosaic virus"; print " Pepper veinal mottle virus"; print " Pepper yellow dwarf virus - New Mexico"; print " Pepper yellow leaf curl Indonesia virus DNA-A"; print " Pepper yellow leaf curl Indonesia virus DNA-B"; print " Pepper yellow vein Mali virus"; print " Perina nuda picorna-like virus"; print " Periplaneta fuliginosa densovirus"; print " Persimmon viroid"; print " Peru tomato mosaic virus"; print " Peruvian horse sickness virus segment 1"; print " Peruvian horse sickness virus segment 10"; print " Peruvian horse sickness virus segment 2"; print " Peruvian horse sickness virus segment 3"; print " Peruvian horse sickness virus segment 4"; print " Peruvian horse sickness virus segment 5"; print " Peruvian horse sickness virus segment 6"; print " Peruvian horse sickness virus segment 7"; print " Peruvian horse sickness virus segment 8"; print " Peruvian horse sickness virus segment 9"; print " Peste-des-petits-ruminants virus"; print " Pestivirus Giraffe-1"; print " Petunia vein clearing virus"; print " Phage Gifsy-1"; print " Phage Gifsy-2"; print " Phage cdtI"; print " Phage phiJL001"; print " Phaius virus X"; print " Phlox Virus B"; print " Phlox virus S"; print " Phocoena spinipinnis papillomavirus"; print " Phormidium phage Pf-WMP3"; print " Phormidium phage Pf-WMP4"; print " Phthorimaea operculella granulovirus"; print " Physalis mottle virus"; print " Phytophthora endornavirus 1"; print " Pichinde virus segment L"; print " Pichinde virus segment S"; print " Pineapple mealybug wilt-associated virus 1"; print " Pirital virus segment L"; print " Pirital virus segment S"; print " Planaria asexual strain-specific virus-like element type 1 large DNA segment"; print " Planaria asexual strain-specific virus-like element type 1 small DNA segment"; print " Planococcus citri densovirus"; print " Plantago asiatica mosaic virus"; print " Plantago mottle virus"; print " Plautia stali intestine virus"; print " Pleurotus ostreatus virus RNA1"; print " Pleurotus ostreatus virus RNA2"; print " Plum bark necrosis and stem pitting-associated virus"; print " Plum pox virus"; print " Plutella xylostella granulovirus"; print " Plutella xylostella multiple nucleopolyhedrovirus"; print " Pneumonia virus of mice J3666"; print " Poinsettia cryptic virus"; print " Poinsettia mosaic virus"; print " Poliovirus"; print " Poplar mosaic virus"; print " Porcine adenovirus A"; print " Porcine adenovirus C"; print " Porcine adenovirus C"; print " Porcine circovirus 1"; print " Porcine circovirus 2"; print " Porcine circovirus"; print " Porcine endogenous retrovirus"; print " Porcine enteric calicivirus"; print " Porcine enterovirus A"; print " Porcine enterovirus B"; print " Porcine epidemic diarrhea virus"; print " Porcine hemagglutinating encephalomyelitis virus"; print " Porcine kobuvirus swine/S-1-HUN/2007/Hungary"; print " Porcine parvovirus"; print " Porcine respiratory and reproductive syndrome virus"; print " Porcine rubulavirus"; print " Porcine teschovirus 1"; print " Possum enterovirus W1"; print " Possum enterovirus W6"; print " Potato apical leaf curl disease-associated satellite DNA beta"; print " Potato aucuba mosaic virus"; print " Potato latent virus"; print " Potato leafroll virus"; print " Potato mop-top virus RNA 1"; print " Potato mop-top virus RNA 2"; print " Potato mop-top virus RNA 3"; print " Potato rough dwarf virus"; print " Potato spindle tuber viroid"; print " Potato virus A"; print " Potato virus M"; print " Potato virus S"; print " Potato virus T"; print " Potato virus V"; print " Potato virus X"; print " Potato virus Y"; print " Potato yellow mosaic Panama virus DNA A"; print " Potato yellow mosaic Panama virus DNA B"; print " Potato yellow mosaic Trinidad virus DNA A"; print " Potato yellow mosaic Trinidad virus DNA B"; print " Potato yellow mosaic virus DNA A"; print " Potato yellow mosaic virus DNA B"; print " Potato yellow vein virus segment 3"; print " Potato yellow vein virus"; print " Potato yellow vein virus"; print " Pothos latent virus"; print " Powassan virus"; print " Prochlorococcus phage P-SSM2"; print " Prochlorococcus phage P-SSM4"; print " Prochlorococcus phage P-SSP7"; print " Procyon lotor papillomavirus type 1"; print " Propionibacterium phage B5"; print " Propionibacterium phage PA6"; print " Prune dwarf virus RNA 1"; print " Prune dwarf virus RNA 2"; print " Prune dwarf virus"; print " Prunus necrotic ringspot virus RNA 3"; print " Prunus necrotic ringspot virus RNA1"; print " Prunus necrotic ringspot virus RNA2"; print " Pseudoalteromonas phage PM2"; print " Pseudomonas phage 119X"; print " Pseudomonas phage 14-1"; print " Pseudomonas phage 201phi2-1"; print " Pseudomonas phage 73"; print " Pseudomonas phage B3"; print " Pseudomonas phage D3"; print " Pseudomonas phage D3112"; print " Pseudomonas phage DMS3"; print " Pseudomonas phage EL"; print " Pseudomonas phage F10"; print " Pseudomonas phage F116"; print " Pseudomonas phage F8"; print " Pseudomonas phage LBL3"; print " Pseudomonas phage LKA1"; print " Pseudomonas phage LKD16"; print " Pseudomonas phage LMA2"; print " Pseudomonas phage LUZ19"; print " Pseudomonas phage LUZ24"; print " Pseudomonas phage M6"; print " Pseudomonas phage MP22"; print " Pseudomonas phage MP29"; print " Pseudomonas phage MP38"; print " Pseudomonas phage PA11"; print " Pseudomonas phage PAJU2"; print " Pseudomonas phage PB1"; print " Pseudomonas phage PP7"; print " Pseudomonas phage PRR1"; print " Pseudomonas phage PT2"; print " Pseudomonas phage PT5"; print " Pseudomonas phage PaP2"; print " Pseudomonas phage PaP3"; print " Pseudomonas phage Pf1"; print " Pseudomonas phage Pf3"; print " Pseudomonas phage SN"; print " Pseudomonas phage YuA"; print " Pseudomonas phage gh-1"; print " Pseudomonas phage phi-12 segment L"; print " Pseudomonas phage phi-12 segment M"; print " Pseudomonas phage phi-12 segment S"; print " Pseudomonas phage phi-13 segment L"; print " Pseudomonas phage phi-13 segment M"; print " Pseudomonas phage phi-13 segment S"; print " Pseudomonas phage phi-6 segment L"; print " Pseudomonas phage phi-6 segment M"; print " Pseudomonas phage phi-6 segment S"; print " Pseudomonas phage phi-8 segment M"; print " Pseudomonas phage phi2954 segment L"; print " Pseudomonas phage phi2954 segment M"; print " Pseudomonas phage phi2954 segment S"; print " Pseudomonas phage phi8 segment L"; print " Pseudomonas phage phi8 segment S"; print " Pseudomonas phage phiCTX"; print " Pseudomonas phage phiKMV"; print " Pseudomonas phage phiKZ"; print " Psittacid herpesvirus 1"; print " Psittacus erithacus timneh papillomavirus"; print " Pumpkin yellow mosaic Malaysia virus DNA A"; print " Puumala virus segment L"; print " Puumala virus segment M"; print " Puumala virus segment S"; print " Pyrobaculum spherical virus"; print " Pyrococcus abyssi virus 1";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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