IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: L

Select Genome:

Bacterial Genome print " Lactobacillus acidophilus NCFM"; print " Lactobacillus brevis ATCC 367 plasmid 1"; print " Lactobacillus brevis ATCC 367 plasmid 2"; print " Lactobacillus brevis ATCC 367"; print " Lactobacillus casei ATCC 334 plasmid 1"; print " Lactobacillus casei ATCC 334"; print " Lactobacillus casei"; print " Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842"; print " Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365"; print " Lactobacillus fermentum IFO 3956"; print " Lactobacillus gasseri ATCC 33323"; print " Lactobacillus helveticus DPC 4571"; print " Lactobacillus johnsonii NCC 533"; print " Lactobacillus plantarum WCFS1 plasmid pWCFS101"; print " Lactobacillus plantarum WCFS1 plasmid pWCFS102"; print " Lactobacillus plantarum WCFS1 plasmid pWCFS103"; print " Lactobacillus plantarum WCFS1"; print " Lactobacillus reuteri DSM 20016"; print " Lactobacillus reuteri JCM 1112"; print " Lactobacillus sakei subsp. sakei 23K"; print " Lactobacillus salivarius UCC118 plasmid pMP118"; print " Lactobacillus salivarius UCC118 plasmid pSF118-20"; print " Lactobacillus salivarius UCC118 plasmid pSF118-44"; print " Lactobacillus salivarius UCC118"; print " Lactococcus lactis subsp. cremoris MG1363"; print " Lactococcus lactis subsp. cremoris SK11 plasmid 1"; print " Lactococcus lactis subsp. cremoris SK11 plasmid 2"; print " Lactococcus lactis subsp. cremoris SK11 plasmid 3"; print " Lactococcus lactis subsp. cremoris SK11 plasmid 4"; print " Lactococcus lactis subsp. cremoris SK11 plasmid 5"; print " Lactococcus lactis subsp. cremoris SK11"; print " Lactococcus lactis subsp. lactis Il1403"; print " Lawsonia intracellularis PHE/MN1-00 plasmid 1"; print " Lawsonia intracellularis PHE/MN1-00 plasmid 2"; print " Lawsonia intracellularis PHE/MN1-00 plasmid 3"; print " Lawsonia intracellularis PHE/MN1-00"; print " Legionella pneumophila str. Corby"; print " Legionella pneumophila str. Lens plasmid pLPL"; print " Legionella pneumophila str. Lens"; print " Legionella pneumophila str. Paris plasmid pLPP"; print " Legionella pneumophila str. Paris"; print " Legionella pneumophila subsp. pneumophila str. Philadelphia 1"; print " Leifsonia xyli subsp. xyli str. CTCB07"; print " Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome I"; print " Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome II"; print " Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' plasmid p74"; print " Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I"; print " Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome II"; print " Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' plasmid p74"; print " Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1"; print " Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 2"; print " Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1"; print " Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 2"; print " Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I"; print " Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome II"; print " Leptospira interrogans serovar Lai str. 56601 chromosome I"; print " Leptospira interrogans serovar Lai str. 56601 chromosome II"; print " Leptothrix cholodnii SP-6"; print " Leuconostoc citreum KM20 plasmid pLCK1"; print " Leuconostoc citreum KM20 plasmid pLCK2"; print " Leuconostoc citreum KM20 plasmid pLCK3"; print " Leuconostoc citreum KM20 plasmid pLCK4"; print " Leuconostoc citreum KM20"; print " Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 plasmid pLEUM1"; print " Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293"; print " Listeria innocua Clip11262 plasmid pLI100"; print " Listeria innocua Clip11262"; print " Listeria monocytogenes EGD-e"; print " Listeria monocytogenes HCC23"; print " Listeria monocytogenes str. 4b F2365"; print " Listeria welshimeri serovar 6b str. SLCC5334"; print " Lysinibacillus sphaericus C3-41 plasmid pBsph"; print " Lysinibacillus sphaericus C3-41"; Viral Genome print " La Crosse virus segment L"; print " La Crosse virus segment M"; print " La Crosse virus segment S"; print " Lactate dehydrogenase-elevating virus"; print " Lactobacillus johnsonii prophage Lj771"; print " Lactobacillus phage A2"; print " Lactobacillus phage KC5a"; print " Lactobacillus phage LL-H"; print " Lactobacillus phage LP65"; print " Lactobacillus phage Lc-Nu"; print " Lactobacillus phage Lrm1"; print " Lactobacillus phage Lv-1"; print " Lactobacillus phage phiAT3"; print " Lactobacillus phage phiJL-1"; print " Lactobacillus phage phig1e"; print " Lactobacillus prophage Lj928"; print " Lactobacillus prophage Lj965"; print " Lactobacillus prophage phiadh"; print " Lactococcus phage 1706"; print " Lactococcus phage 4268"; print " Lactococcus phage 712"; print " Lactococcus phage BK5-T"; print " Lactococcus phage KSY1"; print " Lactococcus phage P008"; print " Lactococcus phage Q54"; print " Lactococcus phage TP901-1"; print " Lactococcus phage Tuc2009"; print " Lactococcus phage asccphi28"; print " Lactococcus phage bIBB29"; print " Lactococcus phage bIL170"; print " Lactococcus phage bIL67"; print " Lactococcus phage c2"; print " Lactococcus phage jj50"; print " Lactococcus phage phiLC3"; print " Lactococcus phage r1t"; print " Lactococcus phage sk1"; print " Lactococcus phage ul36"; print " Lactococcus prophage bIL285"; print " Lactococcus prophage bIL286"; print " Lactococcus prophage bIL309"; print " Lactococcus prophage bIL310"; print " Lactococcus prophage bIL311"; print " Lactococcus prophage bIL312"; print " Lake Victoria marburgvirus - Musoke"; print " Lamium leaf distortion associated virus"; print " Langat virus"; print " Lassa virus segment L"; print " Lassa virus segment S"; print " Latino virus segment L"; print " Latino virus segment S"; print " Leek white stripe virus"; print " Leek yellow stripe virus"; print " Leishmania RNA virus 1 - 1"; print " Leishmania RNA virus 1-4"; print " Leishmania RNA virus 2-1"; print " Lettuce big-vein associated virus RNA 1"; print " Lettuce big-vein associated virus segment 2"; print " Lettuce infectious yellows virus RNA 1"; print " Lettuce infectious yellows virus RNA 2"; print " Lettuce mosaic virus"; print " Lettuce necrotic yellows virus"; print " Lettuce ring necrosis virus RNA 1"; print " Lettuce ring necrosis virus RNA 2"; print " Lettuce ring necrosis virus RNA 3"; print " Lettuce ring necrosis virus RNA 4"; print " Lettuce virus X"; print " Lettuce yellow mottle virus"; print " Leucania separata nuclear polyhedrosis virus"; print " Leuconostoc phage L5"; print " Liao ning virus segment 1"; print " Liao ning virus segment 10"; print " Liao ning virus segment 11"; print " Liao ning virus segment 12"; print " Liao ning virus segment 2"; print " Liao ning virus segment 3"; print " Liao ning virus segment 4"; print " Liao ning virus segment 5"; print " Liao ning virus segment 6"; print " Liao ning virus segment 7"; print " Liao ning virus segment 8"; print " Liao ning virus segment 9"; print " Ligustrum necrotic ringspot virus"; print " Lily mottle virus"; print " Lily symptomless virus"; print " Lily virus X"; print " Lindernia anagallis yellow vein virus DNA-A"; print " Lindernia anagallis yellow vein virus satellite DNA beta"; print " Lisianthus necrosis virus"; print " Listeria phage A006"; print " Listeria phage A118"; print " Listeria phage A500"; print " Listeria phage A511"; print " Listeria phage B025"; print " Listeria phage B054"; print " Listeria phage P35"; print " Listeria phage P40"; print " Listonella phage phiHSIC"; print " Little cherry virus 1"; print " Little cherry virus 2"; print " Ljungan virus"; print " Lolium latent virus"; print " Loofa yellow mosaic virus DNA A"; print " Loofa yellow mosaic virus DNA B"; print " Louping ill virus"; print " LuIII virus"; print " Lucerne transient streak virus satellite RNA"; print " Lucerne transient streak virus"; print " Lucky bamboo bacilliform virus"; print " Ludwigia leaf distortion betasatellite [India:Amadalavalasa:Hibiscus:2007]"; print " Ludwigia yellow vein virus DNA-A"; print " Ludwigia yellow vein virus-associated DNA beta"; print " Luffa begomovirus associated DNA beta"; print " Luffa puckering and leaf distortion-associated DNA beta"; print " Lumpy skin disease virus NI-2490"; print " Lymantria dispar cypovirus 1 segment 1"; print " Lymantria dispar cypovirus 1 segment 10"; print " Lymantria dispar cypovirus 1 segment 2"; print " Lymantria dispar cypovirus 1 segment 3"; print " Lymantria dispar cypovirus 1 segment 4"; print " Lymantria dispar cypovirus 1 segment 5"; print " Lymantria dispar cypovirus 1 segment 6"; print " Lymantria dispar cypovirus 1 segment 7"; print " Lymantria dispar cypovirus 1 segment 8"; print " Lymantria dispar cypovirus 1 segment 9"; print " Lymantria dispar nucleopolyhedrovirus"; print " Lymphocystis disease virus - isolate China"; print " Lymphocystis disease virus 1"; print " Lymphocytic choriomeningitis virus segment L"; print " Lymphocytic choriomeningitis virus segment S";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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