IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: W

Select Genome:

Bacterial Genome print " Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis plasmid pWb1"; print " Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis"; print " Wolbachia endosymbiont of Culex quinquefasciatus Pel"; print " Wolbachia endosymbiont of Drosophila melanogaster"; print " Wolbachia endosymbiont strain TRS of Brugia malayi"; print " Wolbachia sp. wRi"; print " Wolinella succinogenes DSM 1740"; Viral Genome print " WU Polyomavirus"; print " Walleye dermal sarcoma virus"; print " Walrus calicivirus"; print " Watermelon chlorotic stunt virus DNA A"; print " Watermelon chlorotic stunt virus DNA B"; print " Watermelon mosaic virus"; print " Watermelon spotted wilt virus segment L"; print " Watermelon spotted wilt virus segment M"; print " Watermelon spotted wilt virus segment S"; print " West Nile virus (lineage I strain NY99)"; print " West Nile virus (lineage II strain 956)"; print " Western equine encephalomyelitis virus"; print " Western roedeer papillomavirus 1"; print " Wheat dwarf virus"; print " Wheat eqlid mosaic virus"; print " Wheat streak mosaic virus"; print " Wheat yellow mosaic virus RNA 1"; print " Wheat yellow mosaic virus RNA 2"; print " White ash mosaic virus"; print " White bream virus"; print " White clover cryptic virus 1 RNA1"; print " White clover cryptic virus 1 RNA2"; print " White clover mosaic virus"; print " Whitewater Arroyo virus segment L"; print " Whitewater Arroyo virus segment S"; print " Wild potato mosaic virus"; print " Wild tomato mosaic virus"; print " Wissadula golden mosaic St Thomas Virus DNA A"; print " Wissadula golden mosaic St Thomas Virus DNA B"; print " Wisteria vein mosaic virus"; print " Wongabel virus"; print " Woodchuck hepatitis B virus"; print " Woolly monkey sarcoma virus";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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