IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: H

Select Genome:

Bacterial Genome print " Haemophilus ducreyi 35000HP"; print " Haemophilus influenzae 86-028NP"; print " Haemophilus influenzae PittEE"; print " Haemophilus influenzae PittGG"; print " Haemophilus influenzae Rd KW20"; print " Haemophilus parasuis SH0165"; print " Haemophilus somnus 129PT plasmid pHS129"; print " Haemophilus somnus 129PT"; print " Haemophilus somnus 2336"; print " Hahella chejuensis KCTC 2396"; print " Haloarcula marismortui ATCC 43049 chromosome I"; print " Haloarcula marismortui ATCC 43049 chromosome II"; print " Haloarcula marismortui ATCC 43049 plasmid pNG100"; print " Haloarcula marismortui ATCC 43049 plasmid pNG200"; print " Haloarcula marismortui ATCC 43049 plasmid pNG300"; print " Haloarcula marismortui ATCC 43049 plasmid pNG400"; print " Haloarcula marismortui ATCC 43049 plasmid pNG500"; print " Haloarcula marismortui ATCC 43049 plasmid pNG600"; print " Haloarcula marismortui ATCC 43049 plasmid pNG700"; print " Halobacterium salinarum R1 plasmid PHS1"; print " Halobacterium salinarum R1 plasmid PHS2"; print " Halobacterium salinarum R1 plasmid PHS3"; print " Halobacterium salinarum R1 plasmid PHS4"; print " Halobacterium salinarum R1"; print " Halobacterium sp. NRC-1 plasmid pNRC100"; print " Halobacterium sp. NRC-1 plasmid pNRC200"; print " Halobacterium sp. NRC-1"; print " Haloquadratum walsbyi DSM 16790 plasmid PL47"; print " Haloquadratum walsbyi DSM 16790"; print " Halorhodospira halophila SL1"; print " Halorubrum lacusprofundi ATCC 49239 chromosome 1"; print " Halorubrum lacusprofundi ATCC 49239 chromosome 2"; print " Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01"; print " Halothermothrix orenii H 168"; print " Helicobacter acinonychis str. Sheeba plasmid pHac1"; print " Helicobacter acinonychis str. Sheeba"; print " Helicobacter hepaticus ATCC 51449"; print " Helicobacter pylori 26695"; print " Helicobacter pylori G27 plasmid pHPG27"; print " Helicobacter pylori G27"; print " Helicobacter pylori HPAG1 plasmid pHPAG1"; print " Helicobacter pylori HPAG1"; print " Helicobacter pylori J99"; print " Helicobacter pylori P12 plasmid HPP12"; print " Helicobacter pylori P12"; print " Helicobacter pylori Shi470"; print " Heliobacterium modesticaldum Ice1"; print " Herminiimonas arsenicoxydans"; print " Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01"; print " Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU02"; print " Herpetosiphon aurantiacus ATCC 23779"; print " Hydrogenobaculum sp. Y04AAS1"; print " Hyperthermus butylicus DSM 5456"; print " Hyphomonas neptunium ATCC 15444"; Viral Genome print " Haemophilus phage HP1"; print " Haemophilus phage HP2"; print " Haloarcula phage SH1"; print " Halomonas phage phiHAP-1"; print " Halovirus HF1"; print " Halovirus HF2"; print " Hamster polyomavirus"; print " Hantaan virus segment L"; print " Hantaan virus segment M"; print " Hantaan virus segment S"; print " Hantavirus Z10 segment L"; print " Hantavirus Z10 segment M"; print " Hantavirus Z10 segment S"; print " Helicobasidium mompa No.17 dsRNA virus segment L"; print " Helicobasidium mompa No.17 dsRNA virus segment S"; print " Helicoverpa armigera SNPV NNg1"; print " Helicoverpa armigera granulovirus"; print " Helicoverpa armigera multiple nucleopolyhedrovirus"; print " Helicoverpa armigera nuclear polyhedrosis virus"; print " Helicoverpa armigera nucleopolyhedrovirus G4"; print " Helicoverpa armigera stunt virus RNA 1"; print " Helicoverpa armigera stunt virus RNA 2"; print " Helicoverpa zea single nucleocapsid nucleopolyhedrovirus"; print " Heliothis armigera cypovirus 5 segment 1"; print " Heliothis armigera cypovirus 5 segment 10"; print " Heliothis armigera cypovirus 5 segment 2"; print " Heliothis armigera cypovirus 5 segment 3"; print " Heliothis armigera cypovirus 5 segment 4"; print " Heliothis armigera cypovirus 5 segment 5"; print " Heliothis armigera cypovirus 5 segment 6"; print " Heliothis armigera cypovirus 5 segment 7"; print " Heliothis armigera cypovirus 5 segment 8"; print " Heliothis armigera cypovirus 5 segment 9"; print " Heliothis virescens ascovirus 3e"; print " Heliothis zea virus 1"; print " Helleborus net necrosis virus"; print " Helminthosporium victoriae 145S virus segment 1"; print " Helminthosporium victoriae 145S virus segment 2"; print " Helminthosporium victoriae 145S virus segment 3"; print " Helminthosporium victoriae 145S virus segment 4"; print " Helminthosporium victoriae virus 190S"; print " Hendra virus"; print " Hepatitis A virus"; print " Hepatitis B virus"; print " Hepatitis C virus genotype 2"; print " Hepatitis C virus genotype 3"; print " Hepatitis C virus genotype 4"; print " Hepatitis C virus genotype 5"; print " Hepatitis C virus genotype 6"; print " Hepatitis C virus"; print " Hepatitis E virus"; print " Hepatitis GB virus A"; print " Hepatitis GB virus B"; print " Hepatitis delta virus"; print " Hepatopancreatic parvovirus of penaeid shrimp"; print " Heron hepatitis B virus"; print " Heterocapsa circularisquama RNA virus"; print " Heterosigma akashiwo RNA virus SOG263"; print " Hibiscus chlorotic ringspot virus"; print " Hibiscus latent Singapore virus"; print " Himetobi P virus"; print " Hippeastrum latent virus"; print " Hirame rhabdovirus"; print " His1 virus"; print " His2 virus"; print " Hollyhock leaf crumple virus satellite DNA"; print " Hollyhock leaf crumple virus"; print " Homalodisca coagulata virus-1"; print " Honeysuckle yellow vein beta-[Japan:Fukui:2001]"; print " Honeysuckle yellow vein mosaic beta-[Japan:Miyizaki:2001]"; print " Honeysuckle yellow vein mosaic disease associated satellite DNA beta-[Ibaraki]"; print " Honeysuckle yellow vein mosaic virus satellite DNA beta"; print " Honeysuckle yellow vein mosaic virus"; print " Honeysuckle yellow vein mosaic virus-[Kagoshima]"; print " Honeysuckle yellow vein virus-[UK1]"; print " Hop latent viroid"; print " Hop latent virus"; print " Hop mosaic virus"; print " Hop stunt viroid"; print " Hordeum mosaic virus"; print " Horsegram yellow mosaic virus DNA B"; print " Horsegram yellow mosaic virus"; print " Horseradish curly top virus"; print " Hosta virus X"; print " Human T-lymphotropic virus 1"; print " Human T-lymphotropic virus 2"; print " Human T-lymphotropic virus 4"; print " Human TMEV-like cardiovirus"; print " Human adenovirus 2"; print " Human adenovirus 5"; print " Human adenovirus A"; print " Human adenovirus A"; print " Human adenovirus B1"; print " Human adenovirus B2"; print " Human adenovirus C"; print " Human adenovirus D"; print " Human adenovirus D"; print " Human adenovirus E"; print " Human adenovirus F"; print " Human adenovirus type 1"; print " Human adenovirus type 11"; print " Human adenovirus type 35"; print " Human adenovirus type 7"; print " Human astrovirus"; print " Human bocavirus 2"; print " Human bocavirus"; print " Human coronavirus 229E"; print " Human coronavirus HKU1"; print " Human coronavirus NL63"; print " Human coronavirus OC43"; print " Human enterovirus 100"; print " Human enterovirus A"; print " Human enterovirus B"; print " Human enterovirus C"; print " Human enterovirus D"; print " Human erythrovirus V9"; print " Human herpesvirus 1"; print " Human herpesvirus 2"; print " Human herpesvirus 3"; print " Human herpesvirus 4"; print " Human herpesvirus 4"; print " Human herpesvirus 5"; print " Human herpesvirus 5"; print " Human herpesvirus 6A"; print " Human herpesvirus 6B"; print " Human herpesvirus 7"; print " Human herpesvirus 8 type M"; print " Human herpesvirus 8 type P"; print " Human immunodeficiency virus 1"; print " Human immunodeficiency virus 2"; print " Human metapneumovirus"; print " Human papillomavirus - 1"; print " Human papillomavirus - 16"; print " Human papillomavirus - 18"; print " Human papillomavirus - 2"; print " Human papillomavirus - 5"; print " Human papillomavirus - 54"; print " Human papillomavirus - 61"; print " Human papillomavirus FA75/KI88-03"; print " Human papillomavirus RTRX7"; print " Human papillomavirus type 10"; print " Human papillomavirus type 101"; print " Human papillomavirus type 103"; print " Human papillomavirus type 24"; print " Human papillomavirus type 26"; print " Human papillomavirus type 32"; print " Human papillomavirus type 34"; print " Human papillomavirus type 4"; print " Human papillomavirus type 41"; print " Human papillomavirus type 48"; print " Human papillomavirus type 49"; print " Human papillomavirus type 50"; print " Human papillomavirus type 53"; print " Human papillomavirus type 60"; print " Human papillomavirus type 63"; print " Human papillomavirus type 6b"; print " Human papillomavirus type 7"; print " Human papillomavirus type 71"; print " Human papillomavirus type 88"; print " Human papillomavirus type 9"; print " Human papillomavirus type 90"; print " Human papillomavirus type 92"; print " Human papillomavirus type 96"; print " Human parainfluenza virus 1 strain Washington/1964"; print " Human parainfluenza virus 2"; print " Human parainfluenza virus 3"; print " Human parechovirus"; print " Human parvovirus 4"; print " Human picobirnavirus RNA segment 1"; print " Human picobirnavirus RNA segment 2"; print " Human respiratory syncytial virus"; print " Human rhinovirus 89"; print " Human rhinovirus B"; print " Human rhinovirus C"; print " Humulus japonicus latent virus RNA 1"; print " Humulus japonicus latent virus RNA 2"; print " Humulus japonicus latent virus RNA 3"; print " Hyacinth bean yellow mosaic Bangladesh virus DNA-A"; print " Hydrangea ringspot virus"; print " Hyphantria cunea nucleopolyhedrovirus"; print " Hyposoter fugitivus ichnovirus segment A1"; print " Hyposoter fugitivus ichnovirus segment A2"; print " Hyposoter fugitivus ichnovirus segment A3"; print " Hyposoter fugitivus ichnovirus segment B1"; print " Hyposoter fugitivus ichnovirus segment B10"; print " Hyposoter fugitivus ichnovirus segment B11"; print " Hyposoter fugitivus ichnovirus segment B12"; print " Hyposoter fugitivus ichnovirus segment B13"; print " Hyposoter fugitivus ichnovirus segment B14"; print " Hyposoter fugitivus ichnovirus segment B15"; print " Hyposoter fugitivus ichnovirus segment B16"; print " Hyposoter fugitivus ichnovirus segment B17"; print " Hyposoter fugitivus ichnovirus segment B18"; print " Hyposoter fugitivus ichnovirus segment B2"; print " Hyposoter fugitivus ichnovirus segment B3"; print " Hyposoter fugitivus ichnovirus segment B4"; print " Hyposoter fugitivus ichnovirus segment B5"; print " Hyposoter fugitivus ichnovirus segment B6"; print " Hyposoter fugitivus ichnovirus segment B7"; print " Hyposoter fugitivus ichnovirus segment B8"; print " Hyposoter fugitivus ichnovirus segment B9"; print " Hyposoter fugitivus ichnovirus segment C1"; print " Hyposoter fugitivus ichnovirus segment C10"; print " Hyposoter fugitivus ichnovirus segment C11"; print " Hyposoter fugitivus ichnovirus segment C12"; print " Hyposoter fugitivus ichnovirus segment C13"; print " Hyposoter fugitivus ichnovirus segment C14"; print " Hyposoter fugitivus ichnovirus segment C15"; print " Hyposoter fugitivus ichnovirus segment C16"; print " Hyposoter fugitivus ichnovirus segment C17"; print " Hyposoter fugitivus ichnovirus segment C18"; print " Hyposoter fugitivus ichnovirus segment C19"; print " Hyposoter fugitivus ichnovirus segment C2"; print " Hyposoter fugitivus ichnovirus segment C20"; print " Hyposoter fugitivus ichnovirus segment C3"; print " Hyposoter fugitivus ichnovirus segment C4"; print " Hyposoter fugitivus ichnovirus segment C5"; print " Hyposoter fugitivus ichnovirus segment C6"; print " Hyposoter fugitivus ichnovirus segment C7"; print " Hyposoter fugitivus ichnovirus segment C8"; print " Hyposoter fugitivus ichnovirus segment C9"; print " Hyposoter fugitivus ichnovirus segment D1"; print " Hyposoter fugitivus ichnovirus segment D10"; print " Hyposoter fugitivus ichnovirus segment D11"; print " Hyposoter fugitivus ichnovirus segment D12"; print " Hyposoter fugitivus ichnovirus segment D2"; print " Hyposoter fugitivus ichnovirus segment D3"; print " Hyposoter fugitivus ichnovirus segment D4"; print " Hyposoter fugitivus ichnovirus segment D5"; print " Hyposoter fugitivus ichnovirus segment D6"; print " Hyposoter fugitivus ichnovirus segment D7"; print " Hyposoter fugitivus ichnovirus segment D8"; print " Hyposoter fugitivus ichnovirus segment D9"; print " Hyposoter fugitivus ichnovirus segment E1"; print " Hyposoter fugitivus ichnovirus segment E2"; print " Hyposoter fugitivus ichnovirus segment G1";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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