IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: O

Select Genome:

Bacterial Genome print " Oceanobacillus iheyensis HTE831"; print " Ochrobactrum anthropi ATCC 49188 chromosome 1"; print " Ochrobactrum anthropi ATCC 49188 chromosome 2"; print " Ochrobactrum anthropi ATCC 49188 plasmid pOANT01"; print " Ochrobactrum anthropi ATCC 49188 plasmid pOANT02"; print " Ochrobactrum anthropi ATCC 49188 plasmid pOANT03"; print " Ochrobactrum anthropi ATCC 49188 plasmid pOANT04"; print " Oenococcus oeni PSU-1"; print " Oligotropha carboxidovorans OM5"; print " Onion yellows phytoplasma OY-M"; print " Opitutus terrae PB90-1"; print " Orientia tsutsugamushi Boryong"; print " Orientia tsutsugamushi str. Ikeda"; Viral Genome print " O'nyong-nyong virus"; print " Oat blue dwarf virus"; print " Oat chlorotic stunt virus"; print " Oat dwarf virus"; print " Oat golden stripe virus RNA 1"; print " Oat golden stripe virus RNA 2"; print " Oat mosaic virus RNA 1"; print " Oat mosaic virus RNA 2"; print " Oat necrotic mottle virus"; print " Obuda pepper virus"; print " Odontoglossum ringspot virus"; print " OkLCV satDNA 10"; print " Okra leaf curl Mali virus satellite DNA beta"; print " Okra leaf curl disease associated DNA 1"; print " Okra mosaic virus"; print " Okra mottle virus - [Brazil:okra] DNA A"; print " Okra mottle virus - [Brazil:okra] DNA B"; print " Okra yellow crinkle virus segment A"; print " Okra yellow vein disease associated sequence virion"; print " Okra yellow vein mosaic virus"; print " Old World harvest mouse papillomavirus"; print " Olive latent virus 1"; print " Olive latent virus 2 RNA 1"; print " Olive latent virus 2 RNA 2"; print " Olive latent virus 2 RNA 3"; print " Olive mild mosaic virus"; print " Oliveros virus segment L"; print " Oliveros virus segment S"; print " Omsk hemorrhagic fever virus"; print " Onion yellow dwarf virus"; print " Ononis yellow mosaic virus"; print " Operophtera brumata reovirus segment 1"; print " Operophtera brumata reovirus segment 10"; print " Operophtera brumata reovirus segment 2"; print " Operophtera brumata reovirus segment 3"; print " Operophtera brumata reovirus segment 4"; print " Operophtera brumata reovirus segment 5"; print " Operophtera brumata reovirus segment 6"; print " Operophtera brumata reovirus segment 7"; print " Operophtera brumata reovirus segment 8"; print " Operophtera brumata reovirus segment 9"; print " Ophiostoma mitovirus 3a"; print " Ophiostoma mitovirus 4"; print " Ophiostoma mitovirus 5"; print " Ophiostoma novo-ulmi mitovirus 6-Ld"; print " Opuntia virus X"; print " Orchid fleck virus RNA 1"; print " Orchid fleck virus RNA 2"; print " Orf virus"; print " Orgyia leucostigma NPV"; print " Orgyia pseudotsugata multicapsid nucleopolyhedrovirus"; print " Oropouche virus segment L"; print " Oropouche virus segment M"; print " Oropouche virus segment S"; print " Oryctes rhinoceros virus"; print " Oryza rufipogon endornavirus"; print " Oryza sativa endornavirus"; print " Ostreid herpesvirus 1"; print " Ostreococcus virus OsV5"; print " Ourmia melon virus RNA 1"; print " Ourmia melon virus RNA 2"; print " Ourmia melon virus RNA 3"; print " Ovine adenovirus A"; print " Ovine adenovirus A"; print " Ovine adenovirus D"; print " Ovine astrovirus"; print " Ovine enzootic nasal tumour virus"; print " Ovine herpesvirus 2"; print " Ovine lentivirus"; print " Ovine papillomavirus - 1"; print " Ovine pulmonary adenocarcinoma virus"; print " Oyster mushroom spherical virus";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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