IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: D

Select Genome:

Bacterial Genome print " Dechloromonas aromatica RCB"; print " Dehalococcoides ethenogenes 195"; print " Dehalococcoides sp. BAV1"; print " Dehalococcoides sp. CBDB1"; print " Deinococcus deserti VCD115 plasmid 1"; print " Deinococcus deserti VCD115 plasmid 2"; print " Deinococcus deserti VCD115 plasmid 3"; print " Deinococcus deserti VCD115"; print " Deinococcus geothermalis DSM 11300 plasmid 1"; print " Deinococcus geothermalis DSM 11300 plasmid pDGEO02"; print " Deinococcus geothermalis DSM 11300"; print " Deinococcus radiodurans R1 chromosome 1"; print " Deinococcus radiodurans R1 chromosome 2"; print " Deinococcus radiodurans R1 plasmid CP1"; print " Deinococcus radiodurans R1 plasmid MP1"; print " Delftia acidovorans SPH-1"; print " Desulfatibacillum alkenivorans AK-01"; print " Desulfitobacterium hafniense DCB-2"; print " Desulfitobacterium hafniense Y51"; print " Desulfobacterium autotrophicum HRM2 plasmid pHRM2a"; print " Desulfobacterium autotrophicum HRM2"; print " Desulfotalea psychrophila LSv54 plasmid large"; print " Desulfotalea psychrophila LSv54 plasmid small"; print " Desulfotalea psychrophila LSv54"; print " Desulfotomaculum reducens MI-1"; print " Desulfovibrio desulfuricans G20"; print " Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774"; print " Desulfovibrio vulgaris str. 'Miyazaki F'"; print " Desulfovibrio vulgaris subsp. vulgaris DP4 plasmid pDVUL01"; print " Desulfovibrio vulgaris subsp. vulgaris DP4"; print " Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough megaplasmid"; print " Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough"; print " Desulfurococcus kamchatkensis 1221n"; print " Diaphorobacter sp. TPSY"; print " Dichelobacter nodosus VCS1703A"; print " Dictyoglomus thermophilum H-6-12"; print " Dictyoglomus turgidum DSM 6724"; print " Dinoroseobacter shibae DFL 12 plasmid pDSHI01"; print " Dinoroseobacter shibae DFL 12 plasmid pDSHI02"; print " Dinoroseobacter shibae DFL 12 plasmid pDSHI03"; print " Dinoroseobacter shibae DFL 12 plasmid pDSHI04"; print " Dinoroseobacter shibae DFL 12 plasmid pDSHI05"; print " Dinoroseobacter shibae DFL 12"; Viral Genome print " Daphne mosaic virus"; print " Daphne virus S"; print " Dasheen mosaic virus"; print " Deer papillomavirus"; print " Deerpox virus W-1170-84"; print " Deerpox virus W-848-83"; print " Deformed wing virus"; print " Dendrolimus punctatus densovirus"; print " Dendrolimus punctatus tetravirus RNA1"; print " Dendrolimus punctatus tetravirus RNA2"; print " Dengue virus type 1"; print " Dengue virus type 2"; print " Dengue virus type 3"; print " Dengue virus type 4"; print " Desmodium leaf distortion virus DNA A"; print " Desmodium leaf distortion virus DNA B"; print " Diadromus pulchellus ascovirus 4a"; print " Diaporthe ambigua RNA virus 1"; print " Diascia yellow mottle virus"; print " Diatraea saccharalis densovirus"; print " Dicliptera yellow mottle virus DNA A"; print " Dicliptera yellow mottle virus DNA B"; print " Digitaria streak virus"; print " Dioscorea bacilliform virus"; print " Discula destructiva virus 1 segment 1"; print " Discula destructiva virus 1 segment 2"; print " Discula destructiva virus 1 segment 3"; print " Discula destructiva virus 1 segment 4"; print " Discula destructiva virus 2 segment 1"; print " Discula destructiva virus 2 segment 2"; print " Dobrava virus segment M"; print " Dobrava virus segment S"; print " Dobrava-Belgrade virus strain DOBV/Ano-Poroia/Afl9/1999"; print " Dolphin morbillivirus"; print " Dracaena mottle virus"; print " Drosophila C virus"; print " Drosophila x virus segment A"; print " Drosophila x virus segment B"; print " Duck adenovirus A"; print " Duck adenovirus A"; print " Duck circovirus"; print " Duck hepatitis B virus"; print " Duck hepatitis virus 1"; print " Duck hepatitis virus AP"; print " Duck picornavirus TW90A"; print " Dugbe virus segment L"; print " Dugbe virus segment M"; print " Dugbe virus segment S"; print " Dulcamara mottle virus";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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