IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: R

Select Genome:

Bacterial Genome print " Ralstonia eutropha H16 chromosome 1"; print " Ralstonia eutropha H16 chromosome 2"; print " Ralstonia eutropha JMP134 chromosome 1"; print " Ralstonia eutropha JMP134 chromosome 2"; print " Ralstonia eutropha JMP134 megaplasmid"; print " Ralstonia eutropha JMP134 plasmid 1"; print " Ralstonia metallidurans CH34 chromosome 1"; print " Ralstonia metallidurans CH34 chromosome 2"; print " Ralstonia metallidurans CH34 plasmid 1"; print " Ralstonia metallidurans CH34 plasmid 2"; print " Ralstonia pickettii 12J chromosome 1"; print " Ralstonia pickettii 12J chromosome 2"; print " Ralstonia pickettii 12J plasmid pRPIC01"; print " Ralstonia solanacearum GMI1000 plasmid pGMI1000MP"; print " Ralstonia solanacearum GMI1000"; print " Renibacterium salmoninarum ATCC 33209"; print " Rhizobium etli CFN 42 plasmid p42a"; print " Rhizobium etli CFN 42 plasmid p42b"; print " Rhizobium etli CFN 42 plasmid p42c"; print " Rhizobium etli CFN 42 plasmid p42e"; print " Rhizobium etli CFN 42 plasmid p42f"; print " Rhizobium etli CFN 42 symbiotic plasmid p42d"; print " Rhizobium etli CFN 42"; print " Rhizobium etli CIAT 652 plasmid pA"; print " Rhizobium etli CIAT 652 plasmid pB"; print " Rhizobium etli CIAT 652 plasmid pC"; print " Rhizobium etli CIAT 652"; print " Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201"; print " Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202"; print " Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203"; print " Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG204"; print " Rhizobium leguminosarum bv. trifolii WSM2304"; print " Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10"; print " Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11"; print " Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12"; print " Rhizobium leguminosarum bv. viciae 3841 plasmid pRL7"; print " Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8"; print " Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9"; print " Rhizobium leguminosarum bv. viciae 3841"; print " Rhodobacter sphaeroides 2.4.1 chromosome 1"; print " Rhodobacter sphaeroides 2.4.1 chromosome 2"; print " Rhodobacter sphaeroides 2.4.1 plasmid A"; print " Rhodobacter sphaeroides 2.4.1 plasmid B"; print " Rhodobacter sphaeroides 2.4.1 plasmid C"; print " Rhodobacter sphaeroides 2.4.1 plasmid D"; print " Rhodobacter sphaeroides 2.4.1 plasmid E"; print " Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01"; print " Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02"; print " Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03"; print " Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA04"; print " Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA05"; print " Rhodobacter sphaeroides ATCC 17025"; print " Rhodobacter sphaeroides ATCC 17029 chromosome 1"; print " Rhodobacter sphaeroides ATCC 17029 chromosome 2"; print " Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01"; print " Rhodobacter sphaeroides KD131 chromosome 1"; print " Rhodobacter sphaeroides KD131 chromosome 2"; print " Rhodobacter sphaeroides KD131 plasmid pRSKD131A"; print " Rhodobacter sphaeroides KD131 plasmid pRSKD131B"; print " Rhodococcus erythropolis PR4"; print " Rhodococcus jostii RHA1 plasmid pRHL1"; print " Rhodococcus jostii RHA1 plasmid pRHL2"; print " Rhodococcus jostii RHA1 plasmid pRHL3"; print " Rhodococcus jostii RHA1"; print " Rhodococcus opacus B4"; print " Rhodoferax ferrireducens T118 plasmid1"; print " Rhodoferax ferrireducens T118"; print " Rhodopirellula baltica SH 1"; print " Rhodopseudomonas palustris BisA53"; print " Rhodopseudomonas palustris BisB18"; print " Rhodopseudomonas palustris BisB5"; print " Rhodopseudomonas palustris CGA009 plasmid pRPA"; print " Rhodopseudomonas palustris CGA009"; print " Rhodopseudomonas palustris HaA2"; print " Rhodopseudomonas palustris TIE-1"; print " Rhodospirillum centenum SW"; print " Rhodospirillum rubrum ATCC 11170 plasmid unnamed"; print " Rhodospirillum rubrum ATCC 11170"; print " Rickettsia akari str. Hartford"; print " Rickettsia bellii OSU 85-389"; print " Rickettsia bellii RML369-C"; print " Rickettsia canadensis str. McKiel"; print " Rickettsia conorii str. Malish 7"; print " Rickettsia felis URRWXCal2 plasmid pRF"; print " Rickettsia felis URRWXCal2 plasmid pRFdelta"; print " Rickettsia felis URRWXCal2"; print " Rickettsia massiliae MTU5 plasmid pRMA"; print " Rickettsia massiliae MTU5"; print " Rickettsia prowazekii str. Madrid E"; print " Rickettsia rickettsii str. 'Sheila Smith'"; print " Rickettsia rickettsii str. Iowa"; print " Rickettsia typhi str. Wilmington"; print " Roseiflexus castenholzii DSM 13941"; print " Roseiflexus sp. RS-1"; print " Roseobacter denitrificans OCh 114"; print " Roseobacter denitrificans plasmid pTB1"; print " Roseobacter denitrificans plasmid pTB2"; print " Roseobacter denitrificans plasmid pTB3"; print " Roseobacter denitrificans plasmid pTB4"; print " Rubrobacter xylanophilus DSM 9941"; print " Ruegeria pomeroyi DSS-3 megaplasmid"; print " Ruegeria pomeroyi DSS-3"; Viral Genome print " RD114 retrovirus"; print " Rabbit calicivirus Australia 1 MIC-07"; print " Rabbit fibroma virus"; print " Rabbit hemorrhagic disease virus-FRG"; print " Rabbit oral papillomavirus"; print " Rabbit vesivirus"; print " Rabies virus"; print " Rachiplusia ou multiple nucleopolyhedrovirus"; print " Radish leaf curl virus satellite DNA beta"; print " Radish leaf curl virus segment A"; print " Radish mosaic virus RNA1"; print " Radish mosaic virus RNA2"; print " Ralstonia phage RSB1"; print " Ralstonia phage RSL1"; print " Ralstonia phage RSM1"; print " Ralstonia phage RSM3"; print " Ralstonia phage RSS1"; print " Ralstonia phage p12J"; print " Ralstonia phage phiRSA1"; print " Ramie mosaic virus DNA A"; print " Ramie mosaic virus DNA B"; print " Ranid herpesvirus 1"; print " Ranid herpesvirus 2"; print " Raphanus sativus cryptic virus 1 dsRNA 1"; print " Raphanus sativus cryptic virus 1 dsRNA 2"; print " Raphanus sativus cryptic virus 2 segment 1"; print " Raphanus sativus cryptic virus 2 segment 2"; print " Raphanus sativus cryptic virus 2 segment 3"; print " Raphanus sativus cryptic virus 3 segment 1"; print " Raphanus sativus cryptic virus 3 segment 2"; print " Raspberry bushy dwarf virus RNA 1"; print " Raspberry bushy dwarf virus RNA 2"; print " Raspberry mottle virus"; print " Raspberry ringspot virus RNA 1"; print " Raspberry ringspot virus RNA 2"; print " Rauscher murine leukemia virus"; print " Raven circovirus"; print " Red clover mottle virus RNA 1"; print " Red clover mottle virus RNA 2"; print " Red clover necrotic mosaic virus RNA 1"; print " Red clover necrotic mosaic virus RNA 2"; print " Redspotted grouper nervous necrosis virus RNA 1"; print " Redspotted grouper nervous necrosis virus RNA 2"; print " Rehmannia mosaic virus"; print " Respiratory syncytial virus"; print " Reston Ebola virus"; print " Reticuloendotheliosis virus"; print " Rhesus monkey papillomavirus"; print " Rhizobium phage 16-3"; print " Rhizoctonia solani virus RNA1"; print " Rhizoctonia solani virus RNA2"; print " Rhodothermus phage RM378"; print " Rhopalosiphum padi virus"; print " Rhynchosia golden mosaic virus DNA A"; print " Rhynchosia golden mosaic virus DNA B"; print " Ribgrass mosaic virus"; print " Rice black streaked dwarf virus segment 1"; print " Rice black streaked dwarf virus segment 10"; print " Rice black streaked dwarf virus segment 2"; print " Rice black streaked dwarf virus segment 3"; print " Rice black streaked dwarf virus segment 4"; print " Rice black streaked dwarf virus segment 5"; print " Rice black streaked dwarf virus segment 6"; print " Rice black streaked dwarf virus segment 7"; print " Rice black streaked dwarf virus segment 8"; print " Rice black streaked dwarf virus segment 9"; print " Rice dwarf virus segment 1"; print " Rice dwarf virus segment 10"; print " Rice dwarf virus segment 11"; print " Rice dwarf virus segment 12"; print " Rice dwarf virus segment 2"; print " Rice dwarf virus segment 3"; print " Rice dwarf virus segment 4"; print " Rice dwarf virus segment 5"; print " Rice dwarf virus segment 6"; print " Rice dwarf virus segment 7"; print " Rice dwarf virus segment 8"; print " Rice dwarf virus segment 9"; print " Rice gall dwarf virus segment S1"; print " Rice gall dwarf virus segment S10"; print " Rice gall dwarf virus segment S11"; print " Rice gall dwarf virus segment S12"; print " Rice gall dwarf virus segment S2"; print " Rice gall dwarf virus segment S3"; print " Rice gall dwarf virus segment S4"; print " Rice gall dwarf virus segment S5"; print " Rice gall dwarf virus segment S6"; print " Rice gall dwarf virus segment S7"; print " Rice gall dwarf virus segment S8"; print " Rice gall dwarf virus segment S9"; print " Rice grassy stunt virus RNA 1"; print " Rice grassy stunt virus RNA 2"; print " Rice grassy stunt virus RNA 3"; print " Rice grassy stunt virus RNA 4"; print " Rice grassy stunt virus RNA 5"; print " Rice grassy stunt virus RNA 6"; print " Rice ragged stunt virus segment 1"; print " Rice ragged stunt virus segment 10"; print " Rice ragged stunt virus segment 2"; print " Rice ragged stunt virus segment 3"; print " Rice ragged stunt virus segment 4"; print " Rice ragged stunt virus segment 5"; print " Rice ragged stunt virus segment 6"; print " Rice ragged stunt virus segment 7"; print " Rice ragged stunt virus segment 8"; print " Rice ragged stunt virus segment 9"; print " Rice stripe virus RNA 1"; print " Rice stripe virus RNA 2"; print " Rice stripe virus RNA 3"; print " Rice stripe virus RNA 4"; print " Rice tungro bacilliform virus"; print " Rice tungro spherical virus"; print " Rice yellow mottle virus satellite"; print " Rice yellow mottle virus"; print " Rice yellow stunt virus"; print " Rift Valley fever virus L segment"; print " Rift Valley fever virus M segment"; print " Rift Valley fever virus segment S"; print " Rinderpest virus (strain Kabete O)"; print " Rio Bravo virus"; print " Rose cryptic virus 1 RNA 1"; print " Rose cryptic virus 1 RNA 2"; print " Rose cryptic virus 1 RNA 3"; print " Rose spring dwarf-associated virus"; print " Rosellinia necatrix partitivirus 1-W8 segment 1"; print " Rosellinia necatrix partitivirus 1-W8 segment 2"; print " Roseobacter phage SIO1"; print " Ross River virus"; print " Ross's goose hepatitis B virus"; print " Rotavirus A segment 1"; print " Rotavirus A segment 10"; print " Rotavirus A segment 11"; print " Rotavirus A segment 2"; print " Rotavirus A segment 3"; print " Rotavirus A segment 4"; print " Rotavirus A segment 5"; print " Rotavirus A segment 6"; print " Rotavirus A segment 7"; print " Rotavirus A segment 8"; print " Rotavirus A segment 9"; print " Rotavirus C segment 1"; print " Rotavirus C segment 10"; print " Rotavirus C segment 11"; print " Rotavirus C segment 2"; print " Rotavirus C segment 3"; print " Rotavirus C segment 4"; print " Rotavirus C segment 5"; print " Rotavirus C segment 6"; print " Rotavirus C segment 7"; print " Rotavirus C segment 8"; print " Rotavirus C segment 9"; print " Rous sarcoma virus"; print " Rousettus aegyptiacus papillomavirus type 1"; print " Rubella virus"; print " Rubus chlorotic mottle virus"; print " Rudbeckia flower distortion virus"; print " Rupestris stem pitting associated virus-1"; print " Ryegrass mosaic virus"; print " Ryegrass mottle virus";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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