IMEx: Genome-wide Analysis

Browse Genome By Alphabetical Order: A B C D E F G H I J K L M N O P R S T U V W X Y Z Selected: I

Select Genome:

Bacterial Genome print " Idiomarina loihiensis L2TR"; print " Ignicoccus hospitalis KIN4/I"; Viral Genome print " Ictalurid herpesvirus 1"; print " Iguape virus"; print " Ilheus virus"; print " Impatiens necrotic spot virus segment L"; print " Impatiens necrotic spot virus segment M"; print " Impatiens necrotic spot virus segment S"; print " Imperata yellow mottle virus"; print " Indian cassava mosaic virus DNA A"; print " Indian cassava mosaic virus DNA B"; print " Indian citrus ringspot virus"; print " Indian peanut clump virus RNA 1"; print " Indian peanut clump virus RNA 2"; print " Infectious bursal disease virus segment A"; print " Infectious bursal disease virus segment B"; print " Infectious flacherie virus"; print " Infectious hematopoietic necrosis virus"; print " Infectious hypodermal and hematopoietic necrosis virus"; print " Infectious pancreatic necrosis virus segment A"; print " Infectious pancreatic necrosis virus segment B"; print " Infectious salmon anemia virus segment 1"; print " Infectious salmon anemia virus segment 2"; print " Infectious salmon anemia virus segment 3"; print " Infectious salmon anemia virus segment 4"; print " Infectious salmon anemia virus segment 5"; print " Infectious salmon anemia virus segment 6"; print " Infectious salmon anemia virus segment 7"; print " Infectious salmon anemia virus segment 8"; print " Infectious spleen and kidney necrosis virus"; print " Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) segment 1"; print " Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) segment 2"; print " Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) segment 3"; print " Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) segment 4"; print " Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) segment 5"; print " Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) segment 8"; print " Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) strain A/Goose/Guangdong/1/96(H5N1)"; print " Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) strain A/Goose/Guangdong/1/96(H5N1)"; print " Influenza A virus (A/Hong Kong/1073/99(H9N2)) segment 1"; print " Influenza A virus (A/Hong Kong/1073/99(H9N2)) segment 2"; print " Influenza A virus (A/Hong Kong/1073/99(H9N2)) segment 3"; print " Influenza A virus (A/Hong Kong/1073/99(H9N2)) segment 4"; print " Influenza A virus (A/Hong Kong/1073/99(H9N2)) segment 6"; print " Influenza A virus (A/Hong Kong/1073/99(H9N2)) segment 7"; print " Influenza A virus (A/Hong Kong/1073/99(H9N2)) segment 8"; print " Influenza A virus (A/Hong Kong/1073/99(H9N2))"; print " Influenza A virus (A/Korea/426/68(H2N2)) segment 1"; print " Influenza A virus (A/Korea/426/68(H2N2)) segment 2"; print " Influenza A virus (A/Korea/426/68(H2N2)) segment 3"; print " Influenza A virus (A/Korea/426/68(H2N2)) segment 4"; print " Influenza A virus (A/Korea/426/68(H2N2)) segment 5"; print " Influenza A virus (A/Korea/426/68(H2N2)) segment 6"; print " Influenza A virus (A/Korea/426/68(H2N2)) segment 7"; print " Influenza A virus (A/Korea/426/68(H2N2)) segment 8"; print " Influenza A virus (A/New York/392/2004(H3N2)) segment 1"; print " Influenza A virus (A/New York/392/2004(H3N2)) segment 2"; print " Influenza A virus (A/New York/392/2004(H3N2)) segment 3"; print " Influenza A virus (A/New York/392/2004(H3N2)) segment 4"; print " Influenza A virus (A/New York/392/2004(H3N2)) segment 5"; print " Influenza A virus (A/New York/392/2004(H3N2)) segment 6"; print " Influenza A virus (A/New York/392/2004(H3N2)) segment 7"; print " Influenza A virus (A/New York/392/2004(H3N2)) segment 8"; print " Influenza A virus (A/Puerto Rico/8/34(H1N1)) segment 1"; print " Influenza A virus (A/Puerto Rico/8/34(H1N1)) segment 2"; print " Influenza A virus (A/Puerto Rico/8/34(H1N1)) segment 3"; print " Influenza A virus (A/Puerto Rico/8/34(H1N1)) segment 4"; print " Influenza A virus (A/Puerto Rico/8/34(H1N1)) segment 5"; print " Influenza A virus (A/Puerto Rico/8/34(H1N1)) segment 6"; print " Influenza A virus (A/Puerto Rico/8/34(H1N1)) segment 7"; print " Influenza A virus (A/Puerto Rico/8/34(H1N1)) segment 8"; print " Influenza B virus RNA 1"; print " Influenza B virus RNA 4"; print " Influenza B virus RNA 5"; print " Influenza B virus RNA 6"; print " Influenza B virus RNA 7"; print " Influenza B virus RNA 8"; print " Influenza B virus RNA-2"; print " Influenza B virus RNA-3"; print " Influenza C virus (C/Ann Arbor/1/50) segment 2"; print " Influenza C virus (C/Ann Arbor/1/50) segment 3"; print " Influenza C virus (C/Ann Arbor/1/50) segment 4"; print " Influenza C virus (C/Ann Arbor/1/50) segment 5"; print " Influenza C virus (C/Ann Arbor/1/50) segment 6"; print " Influenza C virus (C/Ann Arbor/1/50) segment 7"; print " Influenza C virus segment 1"; print " Invertebrate iridescent virus 6"; print " Iodobacteriophage phiPLPE"; print " Ippy virus segment L"; print " Ippy virus segment S"; print " Iranian maize mosaic nucleorhabdovirus"; print " Iresine viroid 1"; print " Israel acute paralysis virus of bees";

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Set the parameters here: Include Flanking regions 5 10 15 20 30 40 50 100 150 200 Generate Alignments Generate Text output files

Type of Repeat: Imperfect Perfect Repeat Size: All Mono Di Tri Tetra Penta Hexa Enter a Pattern :

Main parameters Mono Di Tri Tetra Penta Hexa Minimum Repeat Number: Imperfection Limit/repeat unit: 0 1 0 1 2 0 1 2 3 0 1 2 3 4 0 1 2 3 4 5 0 1 2 3 4 5 6 % Imperfection in Repeat Tract: 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50%

Extract Compound Microsatellites Max. distance allowed between any two SSRs (dMAX) (0-50)

Level of Standardization: No Standardization Level 1 Standardization Level 2 Standardization Level 3 Standardization Full / Complete Standardization

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