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ChloroMitoSSRDB 2.0
Webserver cum Database of Cholorplast and Mitochondrial Microsatellites
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Chloroplast SSRs
Mitochondrial SSRs
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All Perfect Repeat Motifs of Chloroplast Genomes
Click on the motif to get repeats
T
C
A
G
AG
CT
AC
GT
TG
CA
AT
TA
TC
GA
TCA
ACC
GGT
AGC
ACG
AGG
GAC
GTA
GCT
GTT
TTC
CTC
GCG
ATT
CTT
TTG
CAG
CGT
CAA
AAG
AAT
TAT
AGA
TGT
TCG
CTA
CCA
ATA
TAG
GGC
AAC
CGG
GCA
ACT
TAC
TAA
TCC
GAG
GAA
CCT
GCC
AGT
CAT
ATG
TGA
ACA
TTA
GGA
GAT
TGG
TGC
ATC
CAC
GTG
CCAA
TTGG
AGTA
ATCT
TCCA
TGTA
GCCC
TGTC
TTTA
TATT
AACT
CCCA
ATTG
CGAT
CGAG
GATT
TCCC
TCTG
TGCC
TTCA
TCAT
ACAT
CTTC
TTCT
GATG
TCTT
ATCC
ACTT
GTAT
ATAA
AGTT
GCAA
TTTG
TTTC
GAAA
ATCA
AATC
GATA
TGGT
AAAC
CTCC
CTTT
AAAT
ATAC
GCCT
CAAA
GGAG
ACCC
ACTA
GAAT
ATTT
AGAT
CTGC
ACCA
ATAG
TCCT
CTAA
CCGA
GGGA
CATT
TACT
TAGT
GAAG
AACC
CTTA
CCAT
ATGG
CTAT
TAAC
GGAT
TGAG
CTTG
AGCA
AGGC
TTGT
TACA
GAGG
AGGA
CAAT
TAAA
TCTA
AACA
GGAA
CCTT
AATA
TAAG
GAGT
AGGT
TTGA
TAGA
AGAA
TTCC
CATA
GTTG
GCGG
TCAA
TTAA
TCGT
CCCT
AAGG
TTAG
TCAG
CCTC
AATT
ATTC
TTGC
TCGG
TAAT
ATGT
AGGG
CGGG
AGAC
CTAG
CAAC
CAGG
AAAG
CTAC
AAGA
TATC
ACCG
GGTT
GTTT
AGCC
TGTT
GTCT
CTCG
ATTA
TGAA
GTGG
TTAC
TCGA
AATG
TGGG
TTAAG
CAGAA
AGAGA
TTCCC
AATAT
AAAGT
ATACA
ATTTC
TAAAA
TTTAT
TTAAA
AAATC
AAAAT
AATGA
ATAGA
TTTCA
TTCTG
CTCTT
AAGAG
ATATT
TATTC
AATTC
ATTGA
ATTCT
AGAAT
AAAGA
TATAG
TTATC
ATCTA
TATCC
TAATG
AATTG
TAATT
ATTCA
GCAAT
TGTTT
TAGGT
AATTA
ATTAT
ATTAA
AGAAA
CAATT
AAATT
GAAAA
TCTTG
ATTAC
ATCCT
TATAA
TATTG
TGAAA
TAGAG
AAGCA
TTTTG
TTTTA
TCATA
TCAAA
TATAT
CAAAA
TCTTT
TAAAT
TTGAT
TCCTA
CAAAT
GACCG
TGGAT
AAATA
AATAA
TAAAG
CCAAT
ATGGT
CAATA
TTAGA
CATTG
AAGAA
ATTAG
TCCGT
AAGGG
TAAAC
ATTTA
CCATA
ACTTA
TTTGT
TTTCT
GAATA
TTTAG
CTTCT
TAAGA
CCAAC
ACGGA
AAAAG
AGAGT
CTTTA
TCTAT
ATAAA
ATGTA
TTATA
CCTTC
ATATA
ATACC
AATAG
TATGA
TTTAA
ATTTT
TTCTT
TAATA
CTTAT
TATGG
TGGCC
GAAAG
ATCAA
TACCA
TAGAA
CTATT
GAGGT
ATAAG
TTTTC
ACCGA
AATTT
TTTGA
TTATT
ATCTT
CAATG
AGTTA
TGAAT
GGAAA
CAATC
GTTTA
ATACT
TCATT
CTAAT
AACTA
TGAGA
CTTTT
ATGAA
TTAAT
TATGT
GGAGTG
TTATAG
AATTGA
TTTAAA
TTAATT
TTTTTG
TCATTC
TCAAAT
TTCTAA
GAATTT
ATTACT
TACATA
ATATTT
TTTATA
TCTTCA
ATAGAA
ATTCAT
TAGGGA
TGTTTT
TCTTTT
CTAATA
CATCCT
TTAACG
TGGAGT
AAAAGG
TAAATG
CTATAA
CCGGAA
AAGCAA
ATAACA
TCCTTA
ATTTTA
GTTGGT
TCTTAT
CTATTC
TATAGA
GAGGAA
TCATAT
TCTATC
TATTAG
TGACGA
CGTTAA
TTTTCT
CAAGCC
TTTTTC
TATTTT
TTTTAT
GAAGTC
CAAGAT
TCTATT
ATTTAG
CATTTT
TTTCTA
AATGAT
TAGAGC
TTCATA
ATTGAT
AGAATG
TAAAAT
ATTCTA
CAAAAA
ATATGA
AAGAGG
TTAAAC
AGTAGA
ATTAGT
ATAGAT
CAGGAA
ACTAAT
GAATAA
GAATAG
TGAATT
TCATTT
TATGTA
CTCTTG
ATCAAT
ATTAAT
ATATTA
TTCTAT
ATCTAT
TTTTTA
CTATAT
ATAAAT
AAGTTT
AGTTGG
AAAAAT
TATAGT
TTATAA
TTAATA
TCAAAA
AAAAAG
GAAGGG
AGAAAA
TTTCAT
TTTTAA
TATAAG
ATATAA
AATATA
ATATCT
AAATAG
TTTTGA
AAAGAG
TATTGA
CTTATT
TTGTAT
CTTATC
AAAACA
GTAAGA
CATTCT
TTATAT
AGGGGA
TTACCT
CTGCCG
CCTCTT
GTATTA
AAAATA
CTATTA
AGAAGT
GTTGCG
ATTAAA
AGGAAA
TCTGGT
TCCCCA
ATTTTC
GTGAAA
ATCGTC
TATATT
GATAAA
TATGTT
CCAATG
AGTAAT
CTACCT
ATCTGA
ACTTAG
AGAGAA
TTTCAC
ATTTTG
GGATAA
TCCTTC
GATATT
GAGCAG
AAAAGA
TTTACT
ATCTTT
CCGTCG
GAGAAT
TTAGTA
AGGAAG
GTGATG
AAGTAC
CAATGG
AAGAAC
AAAGAA
CTCTTC
CATAGT
CAATAT
ACTTCT
AAATAA
TAAATT
ACGTAA
ATTCAG
AGCCAC
GGTTCG
AATTTG
GAAAAA
TAGAAA
TTCATT
TAAAAA
AATTAT
TCTTCC
GCGACG
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