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ChloroMitoSSRDB 2.0
Webserver cum Database of Cholorplast and Mitochondrial Microsatellites
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Chloroplast SSRs
Mitochondrial SSRs
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All Perfect Repeat Motifs of Chloroplast Genomes
Click on the motif to get repeats
G
C
T
A
AG
CT
AC
GT
CA
TG
AT
TA
TC
GA
GAT
TGC
TGG
ATC
CAC
GTG
CGC
TCA
ACC
GGT
AGC
ACG
AGG
GAC
GTT
GCT
TTC
CTC
GCG
ATT
CCG
CTT
CAG
TTG
CAA
CGT
AAG
AAT
TGT
TAT
TCG
CTA
TCT
CCA
ATA
TAG
GGC
AAC
CGG
GCA
TCC
ACT
TAA
GAA
GAG
GCC
CCT
CAT
ATG
AGT
CTG
TGA
ACA
TTA
CAAC
TTAT
CTAG
CTAC
AAGA
TATC
CAGG
AAAG
ACCG
GGTT
GTTT
GTCT
AGCC
TGTT
TGAA
TGGA
ATTA
AATG
TGGG
GTGG
TTAC
TCGA
CCAA
TTGG
TGAT
AGTA
ATCT
TCCA
TGTA
GCCC
TGTC
TTTA
CCCA
ATTG
AACT
GATT
ACAA
CGAT
CGAG
TTCA
TCAT
ACAT
TCCC
TCTG
GATG
TCTT
ATCC
CTTC
TTCT
ACTT
GTAT
ATAA
TTTC
GAAA
ATCA
AATC
TGCA
AGTT
TTTG
GATA
TGGT
AAAC
AAAT
ATAC
TATG
CTCC
CTTT
GGAG
ACCC
GCCT
CAAA
AGAT
GAAT
ATTT
ATAG
TCCT
CTGC
ACCA
CATT
TACT
TAGT
GAAG
CTAA
CCGA
ATGA
GGGA
ATGG
AACC
CTTA
CTTG
TAGG
CTAT
TAAC
GGAT
TGAG
TTGT
TACA
AGCA
AGGC
TCTA
GAGG
AGGA
CAAT
TAAA
TAAG
AACG
GGAA
CCTT
AATA
AGGT
TTGA
GAGT
AGAA
TTCC
TAGA
TTAA
TCGT
CCCT
GTTG
GCGG
TCAA
AAGT
TTAG
TCAG
AAGG
ATTC
CCTC
AATT
ATGT
AGGG
CGGG
TTGC
TCGG
ATTTT
TTCTT
TAATA
CTTAT
TATGA
TTTAA
TGGCC
TATGG
AAACA
CTATT
GAGGT
ATAAG
GAAAG
ATCAA
TACCA
TTTGA
TTATT
TTTTC
ACCGA
AATTT
GTTTA
ATCTT
TGCAT
AGTTA
TGAAT
GGAAA
CAATC
CTTTT
ATGAA
TTAAT
TCACC
TATGT
ATACT
TCATT
CTAAT
AACTA
TGAGA
TTAAG
CAGAA
AGAGA
TTCCC
TAAAA
TAGTA
AAAGT
ATACA
ATTTC
AAATC
AAAAT
TTTAT
TTAAA
AAGAG
AATGA
ATAGA
TTTCA
TTCTG
CTCTT
AGAAT
AAAGA
TATTC
AATTC
ATTGA
AATCA
ATTCT
TTATC
TATAG
ATCTA
TATCC
TAATG
GCAAT
TGTTT
TAATT
ATTCA
AATTA
ATTAT
TAGGT
ACTAT
CAATT
AAATT
ATTAA
GAAAA
TCTTG
ATTAC
ATCCT
TGAAA
TATAA
TATTG
TATTT
TAGAG
TTTTA
AAGCA
TTTTG
TCAAA
TATAT
TCATA
CAAAT
GACCG
TCTTT
TAAAT
TTGAT
TCCTA
AAATA
TGGAT
AAGGA
TAAAG
CCAAT
AATAA
CAATA
CATTG
AAGAA
TTAGA
TAAAC
ATTTA
AGATA
ATTAG
TCCGT
AAGGG
TTTCT
CCATA
ACTTA
TTTGT
TAAGA
GAATA
TTTAG
CTTCT
TCTAT
ACTTT
ATAAA
ACGGA
AAAAG
AGAGT
CTTTA
ATATA
ATGTA
TTATA
CCTTC
ATACC
GAGAAT
TTAGTA
TTTACT
ATCTTT
CCGTCG
AAAGAA
TTTCTT
AGGAAG
GTGATG
AAGTAC
CAATGG
AAGAAC
ACTTCT
CTCTTC
CATAGT
CAATAT
GGTTCG
AATTTG
GAAAAA
TAGAAA
TAAATT
ACGTAA
ATTCAG
AGCCAC
CTTTTT
TAAAAA
AATTAT
TCTTCC
GCGACG
TTTTTG
TCATTC
GGAGTG
TTATAG
AATTGA
TTTAAA
TTAATT
GAATTT
TCAAAT
TTCTAA
TCTTCA
ATAGAA
ATTACT
TACATA
ATATTT
GGTTCC
TTTATA
TCTTTT
CTAATA
CATCCT
TAGGGA
TGTTTT
AAAAGG
TAAATG
TTAACG
TGGAGT
ATTTTA
GTTGGT
CTATAA
AGTCGA
CCGGAA
AAGCAA
ATAACA
TCTATC
TATTAG
TGACGA
TCTTAT
CTATTC
TATAGA
GAGGAA
TTTTCT
CAAGCC
TTTTTC
TATTTT
ATCCAA
CGTTAA
TCTATT
TTTTAT
GAAGTC
CAAGAT
GAAAAG
TTCATA
ATTGAT
AGAATG
CATTTT
TTTCTA
AATGAT
TAGAGC
CAAAAA
ATATGA
TAAAAT
ATTCTA
CAGGAA
ACTAAT
TCCAAC
AAGAGG
TTAAAC
AGTAGA
ATAGAT
ATCAAT
GAATAA
GAATAG
TGAATT
TCATTT
TATGTA
CTCTTG
CTATAT
ATAAAT
ATTAAT
ATATTA
TTCTAT
ATCTAT
TCCTCT
AAGTTT
AGTTGG
AAAAAT
TATAGT
TCAAAA
AAAAAG
TTATAA
TTAATA
AGAAAA
TTTCAT
GAAGGG
TTTTGA
TTTTAA
ATATAA
TCTGAA
AATATA
ATATCT
AAATAG
AAAACA
GTAAGA
CATTCT
AAAGAG
TATTGA
CTTATT
TTGTAT
CTTATC
CCTCTT
AAAATA
TTATAT
AGGGGA
TAGTAA
TTACCT
CTGCCG
AGGAAA
TCTGGT
CTATTA
AGAAGT
GTTGCG
ATTAAA
TAGAAT
ATCGTC
ATTTTC
GTGAAA
TATGTT
TATATT
GATAAA
CCAATG
AGTAAT
CTACCT
ATCTGA
ATTTTG
GGATAA
ACTTAG
AGAGAA
TTTCAC
TCCTTC
AAAATT
GATATT
GAGCAG
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