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ChloroMitoSSRDB 2.0
Webserver cum Database of Cholorplast and Mitochondrial Microsatellites
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Chloroplast SSRs
Mitochondrial SSRs
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All Perfect Repeat Motifs of Chloroplast Genomes
Click on the motif to get repeats
G
T
C
A
TA
TC
GA
AG
CT
AC
GT
TG
CA
AT
GAG
CCT
GCC
CTG
CAT
ATG
AGT
ACA
TTA
TGA
GGA
GAT
TGG
TGC
CAC
GTG
CGC
ACC
GGT
AGC
ACG
TCA
AGG
GTA
GAC
GCT
GTT
TTC
ATT
CTC
CCG
CTT
CAG
TTG
CGT
CAA
AAG
AAT
TAT
AGA
TGT
CTA
CCA
ATA
TCT
TAG
GGC
AAC
CGG
GCA
TAA
TCC
ACT
TAC
GCGG
TCAA
TCGT
CCCT
GTTG
AAGG
AAGT
TTAG
TCAG
CCTC
AATT
ATTC
TCGG
TAAT
ATGT
AGGG
TTGC
CAAC
TTAT
AGAC
CTAG
AAAG
CTAC
AAGA
TATC
CAGG
GGTT
GTTT
ACCG
TGTT
AGCC
ATTA
TGAA
TGGA
CTCG
TTAC
TCGA
AATG
TGGG
GTGG
CCAA
TTGG
TGAT
AGTA
TCCA
TGTA
GCCC
TTTA
TATT
TGTC
AACT
CCCA
ATTG
CGAG
GATT
ACAA
CGAT
TGCC
TCAT
ACAT
TCCC
TCTG
TTCT
GATG
TCTT
ATCC
CTTC
ATAA
ACTT
GTAT
GCAA
TTTG
GAAA
ATCA
AATC
TGCA
AGTT
AAAC
GATA
TGGT
CTCC
CTTT
AAAT
ATAC
TATG
GCCT
GGAG
ACCC
ACTA
GAAT
ATTT
AGAT
CTGC
ACCA
ATAG
TCCT
CCGA
ATGA
GGGA
CATT
TAGT
GAAG
CTAA
CTTA
CCAT
ATGG
AACC
TGAG
CTTG
TAGG
CTAT
TAAC
GGAT
AGGC
TACA
AGCA
AGGA
CAAT
TAAA
TCTA
AACA
GAGG
AATA
TAAG
AACG
GGAA
CCTT
GAGT
TTGA
TAGA
AGAA
TTCC
CATA
CTTCT
TAAGA
CCAAC
GAATA
TTTAG
AGAGT
CTTTA
TCTAT
ACTTT
ACGGA
AAAAG
ATATA
ATGTA
TTATA
CCTTC
AATAG
ATACC
TTTAA
ATTTT
TTCTT
TAATA
CTTAT
TATGA
TATGG
AAACA
ATCAA
TACCA
TAGAA
CTATT
GAGGT
ATAAG
GAAAG
ACCGA
AATTT
TTTGA
TTATT
TTTTC
GGAAA
CAATC
GTTTA
ATCTT
TGCAT
CAATG
AGTTA
TGAGA
CTTTT
ATGAA
TTAAT
TCACC
TATGT
ATACT
CTAAT
AACTA
TTCCC
AATAT
TTAAG
CAGAA
AGAGA
TAAAA
TAGTA
AAAGT
ATACA
ATTTC
TTAAA
AAATC
TTTAT
AAGAG
ATATT
AATGA
ATAGA
TTTCA
TTCTG
CTCTT
AGAAT
AAAGA
TATTC
AATTC
ATTGA
AATCA
TTATC
TATAG
TAATG
AATTG
ATCTA
TATCC
GCAAT
TGTTT
TAATT
ATTCA
AATTA
ATTAT
TAGGT
ACTAT
AAATT
ATTAA
AGAAA
ATCCT
GAAAA
TCTTG
ATTAC
TGAAA
TATAA
TATTG
TATTT
TAGAG
TTTTA
AAGCA
TCAAA
TATAT
CAAAA
TCATA
TCCTA
CAAAT
GACCG
TCTTT
TAAAT
TTGAT
AAATA
TGGAT
AAGGA
AATAA
CCAAT
CAATA
ATGGT
CATTG
AAGAA
TTAGA
TAAAC
ATTTA
AGATA
ATTAG
TCCGT
AAGGG
TTTGT
TTTCT
ACTTA
TATGTT
TATATT
GATAAA
CCAATG
AGTAAT
CTACCT
ATCTGA
TTTCAC
ATTTTG
GGATAA
ACTTAG
AGAGAA
GAGCAG
TCCTTC
AAAATT
GATATT
ATCTTT
CCGTCG
GAGAAT
TTAGTA
TTTACT
CAATGG
AAGAAC
AAAGAA
TTTCTT
AGGAAG
GTGATG
ACTTCT
AAATAA
CTCTTC
CATAGT
CAATAT
GGTTCG
AATTTG
GAAAAA
TAGAAA
TAAATT
ACGTAA
ATTCAG
AGCCAC
CTTTTT
AATTAT
TTCATT
GCGACG
TCTTCC
TTAATT
TTTTTG
TCATTC
GGAGTG
TTATAG
AATTGA
TTTAAA
GAATTT
TCAAAT
TTCTAA
TCTTCA
ATAGAA
ATTCAT
ATTACT
TACATA
ATATTT
GGTTCC
TGTTTT
TCTTTT
CTAATA
CATCCT
TAGGGA
TTAACG
TGGAGT
TAAATG
AAGCAA
ATAACA
TCCTTA
ATTTTA
GTTGGT
CTATAA
AGTCGA
CCGGAA
TCATAT
TCTATC
TATTAG
TGACGA
TCTTAT
TATAGA
GAGGAA
CGTTAA
TTTTCT
CAAGCC
TTTTTC
TATTTT
ATCCAA
CAAGAT
TCTATT
TTTTAT
GAAGTC
AATGAT
TAGAGC
TTCATA
ATTGAT
AGAATG
ATTTAG
CATTTT
TTTCTA
CAAAAA
ATATGA
TAAAAT
ATTCTA
ATAGAT
CAGGAA
ACTAAT
TCCAAC
TTAAAC
AGTAGA
ATTAGT
ATCAAT
GAATAA
GAATAG
TGAATT
TCATTT
TATGTA
CTCTTG
TTTTTA
CTATAT
ATAAAT
ATTAAT
TTCTAT
ATCTAT
TATAGT
TCCTCT
AAGTTT
AGTTGG
AAAAAT
TCAAAA
AAAAAG
TTATAA
TTAATA
AGAAAA
TTTCAT
GAAGGG
AAATAG
TTTTGA
TTTTAA
TATAAG
ATATAA
TCTGAA
AATATA
AAAACA
GTAAGA
CATTCT
AAAGAG
TATTGA
CTTATT
TTGTAT
TTACCT
CTGCCG
CCTCTT
GTATTA
AAAATA
TTATAT
AGGGGA
TAGTAA
ATTAAA
AGGAAA
TCTGGT
CTATTA
AGAAGT
GTTGCG
ATCGTC
TCCCCA
ATTTTC
GTGAAA
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