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ChloroMitoSSRDB 2.0
Webserver cum Database of Cholorplast and Mitochondrial Microsatellites
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Chloroplast SSRs
Mitochondrial SSRs
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All Perfect Repeat Motifs of Chloroplast Genomes
Click on the motif to get repeats
T
C
A
G
AC
GT
CA
TG
AT
TA
TC
GA
AG
CT
TTG
CGT
CAA
AAG
AAT
TAT
AGA
TGT
CTA
TCG
CCA
ATA
TCT
TAG
AAC
GCA
CGG
TAA
TCC
ACT
TAC
GAA
GAG
GCC
CCT
CTG
CAT
ATG
ACA
TTA
TGA
GGA
GAT
TGG
TGC
ATC
CAC
GTG
CGC
AGC
ACG
TCA
GGT
AGG
GTA
GAC
GCT
GTT
TTC
ATT
CTC
GCG
CCG
CTT
CTTT
AAAT
TATG
CTCC
CAAA
GGAG
ACCC
GCCT
GAAT
ATTT
AGAT
ACTA
ACCA
ATAG
TCCT
CTGC
GGGA
CATT
TACT
TAGT
GAAG
CTAA
CCGA
CTTA
CCAT
ATGG
AACC
CTTG
TAGG
CTAT
GGAT
TGAG
TTGT
TACA
AGCA
AGGC
CAAT
TAAA
TCTA
AACA
GAGG
AGGA
AATA
TAAG
GGAA
CCTT
GAGT
AGGT
TTGA
TAGA
AGAA
TTCC
CATA
TCAA
TTAA
TCGT
CCCT
GTTG
AAGG
AAGT
TTAG
TCAG
AATT
ATTC
CCTC
TAAT
ATGT
AGGG
CGGG
TTGC
TCGG
CAAC
AGAC
CTAG
AAAG
CTAC
AAGA
TATC
CAGG
GGTT
GTTT
ACCG
GTCT
AGCC
TGTT
ATTA
TGGA
CTCG
TTAC
TCGA
AATG
TGGG
GTGG
CCAA
TTGG
TGAT
AGTA
ATCT
TCCA
TGTA
TTTA
TATT
TGTC
CCCA
ATTG
AACT
CGAG
GATT
ACAA
CGAT
TTCA
TCAT
ACAT
TCCC
TGCC
TTCT
GATG
TCTT
ATCC
CTTC
ATAA
ACTT
GTAT
GCAA
TTTG
TTTC
GAAA
ATCA
TGCA
AGTT
AAAC
GATA
TGGT
GAAAA
TCTTG
ATTAC
ATCCT
TGAAA
TATAA
TATTG
TATTT
TAGAG
AAGCA
TTTTG
TCAAA
TATAT
CAAAA
TCATA
CAAAT
GACCG
TCTTT
TAAAT
TTGAT
TCCTA
AAATA
TGGAT
AATAA
TAAAG
CCAAT
CAATA
ATGGT
CATTG
AAGAA
TTAGA
TAAAC
ATTTA
AGATA
ATTAG
TCCGT
AAGGG
CCATA
ACTTA
TTTGT
TAAGA
CCAAC
GAATA
TTTAG
CTTCT
CTTTA
TCTAT
ACTTT
ATAAA
ACGGA
AAAAG
ATATA
ATGTA
TTATA
CCTTC
AATAG
ATACC
TTTAA
ATTTT
TTCTT
TAATA
CTTAT
TATGA
TGGCC
TATGG
TAGAA
CTATT
GAGGT
ATAAG
GAAAG
ATCAA
TACCA
AATTT
TTTGA
TTATT
TTTTC
ACCGA
CAATC
GTTTA
TGCAT
CAATG
AGTTA
TGAAT
GGAAA
CTTTT
ATGAA
TTAAT
TCACC
TATGT
ATACT
TCATT
CTAAT
AACTA
AATAT
TTAAG
CAGAA
AGAGA
TTCCC
TAAAA
TAGTA
AAAGT
ATACA
ATTTC
TTAAA
AAATC
AAAAT
TTTAT
ATATT
AATGA
ATAGA
TTTCA
TTCTG
CTCTT
AGAAT
AAAGA
TATTC
AATTC
ATTGA
AATCA
ATTCT
TTATC
AATTG
ATCTA
TATCC
TAATG
GCAAT
TGTTT
TAATT
ATTCA
AATTA
ATTAT
TAGGT
ACTAT
CAATT
AAATT
AGAAA
CAAAAA
ATATGA
TAAAAT
ATTCTA
CAGGAA
ACTAAT
TCCAAC
AAGAGG
TTAAAC
AGTAGA
ATTAGT
ATAGAT
ATCAAT
GAATAG
TGAATT
TCATTT
TATGTA
CTCTTG
CTATAT
ATAAAT
ATTAAT
ATATTA
TTCTAT
ATCTAT
TTTTTA
TCCTCT
AAGTTT
AAAAAT
TATAGT
TCAAAA
AAAAAG
TTATAA
TTAATA
AGAAAA
TTTCAT
GAAGGG
AAATAG
TTTTGA
TTTTAA
TATAAG
ATATAA
AATATA
ATATCT
AAAACA
GTAAGA
CATTCT
AAAGAG
TATTGA
CTTATT
TTGTAT
CTTATC
CCTCTT
GTATTA
AAAATA
TTATAT
TAGTAA
TTACCT
CTGCCG
AGGAAA
TCTGGT
CTATTA
AGAAGT
GTTGCG
ATTAAA
TAGAAT
ATCGTC
TCCCCA
ATTTTC
GTGAAA
TATATT
GATAAA
CCAATG
AGTAAT
CTACCT
ATCTGA
ATTTTG
GGATAA
ACTTAG
AGAGAA
TTTCAC
AAAAGA
TCCTTC
AAAATT
GAGCAG
GAGAAT
TTAGTA
TTTACT
ATCTTT
CCGTCG
AAAGAA
TTTCTT
AGGAAG
GTGATG
AAGTAC
CAATGG
AAGAAC
ACTTCT
CTCTTC
CATAGT
CAATAT
GGTTCG
AATTTG
GAAAAA
TAGAAA
TAAATT
ACGTAA
ATTCAG
AGCCAC
CTTTTT
TAAAAA
AATTAT
TCTTCC
GCGACG
TTTTTG
TCATTC
GGAGTG
TTATAG
AATTGA
TTTAAA
TTAATT
GAATTT
TCAAAT
TTCTAA
TCTTCA
ATAGAA
ATTACT
TACATA
ATATTT
GGTTCC
TTTATA
TCTTTT
CTAATA
CATCCT
TAGGGA
TGTTTT
AAAAGG
TAAATG
TTAACG
TGGAGT
TCCTTA
ATTTTA
GTTGGT
CTATAA
AGTCGA
CCGGAA
AAGCAA
TCTATC
TATTAG
TGACGA
TCTTAT
CTATTC
TATAGA
GAGGAA
TTTTCT
CAAGCC
TTTTTC
TATTTT
ATCCAA
CGTTAA
TCTATT
TTTTAT
GAAGTC
CAAGAT
GAAAAG
TTCATA
ATTGAT
AGAATG
CATTTT
TTTCTA
AATGAT
TAGAGC
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