List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092736 | TAT | 4 | 49 | 60 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092736 | GAT | 4 | 939 | 950 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 3. | NW_001092736 | CTG | 4 | 2065 | 2076 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85114896 |
| 4. | NW_001092736 | CGC | 5 | 2078 | 2092 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85114896 |
| 5. | NW_001092736 | GGA | 4 | 2162 | 2173 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85114896 |
| 6. | NW_001092736 | GCC | 4 | 2977 | 2987 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 7. | NW_001092736 | GAT | 7 | 4849 | 4869 | 21 | 33.33% | 33.33% | 33.33% | 0.00% | 85114900 |
| 8. | NW_001092736 | GTC | 8 | 5244 | 5267 | 24 | 0.00% | 33.33% | 33.33% | 33.33% | 85114900 |
| 9. | NW_001092736 | TCT | 4 | 8408 | 8419 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85114908 |
| 10. | NW_001092736 | CAG | 4 | 10005 | 10015 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 11. | NW_001092736 | CCT | 4 | 10348 | 10359 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 12. | NW_001092736 | ACC | 4 | 11752 | 11763 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85114913 |
| 13. | NW_001092736 | CTC | 4 | 17728 | 17739 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 14. | NW_001092736 | GTG | 4 | 20171 | 20181 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 15. | NW_001092736 | GAC | 4 | 22024 | 22034 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85114926 |
| 16. | NW_001092736 | CAC | 4 | 22896 | 22907 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85114926 |
| 17. | NW_001092736 | ATC | 4 | 23388 | 23399 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 18. | NW_001092736 | ATG | 4 | 26389 | 26399 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 19. | NW_001092736 | TCG | 4 | 27763 | 27774 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 20. | NW_001092736 | ACG | 4 | 28597 | 28608 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85114934 |
| 21. | NW_001092736 | AGG | 9 | 29490 | 29517 | 28 | 33.33% | 0.00% | 66.67% | 0.00% | 85114934 |
| 22. | NW_001092736 | CGC | 6 | 29837 | 29854 | 18 | 0.00% | 0.00% | 33.33% | 66.67% | 85114934 |
| 23. | NW_001092736 | GGA | 4 | 31416 | 31427 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85114939 |
| 24. | NW_001092736 | TGG | 5 | 31531 | 31545 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 25. | NW_001092736 | TCA | 4 | 32107 | 32118 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85114943 |
| 26. | NW_001092736 | TCT | 4 | 32365 | 32376 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85114943 |
| 27. | NW_001092736 | TCA | 4 | 33334 | 33345 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85114948 |
| 28. | NW_001092736 | TGT | 5 | 35064 | 35078 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 29. | NW_001092736 | CGT | 8 | 35076 | 35099 | 24 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 30. | NW_001092736 | TGT | 5 | 35097 | 35111 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 31. | NW_001092736 | CAA | 7 | 36060 | 36080 | 21 | 66.67% | 0.00% | 0.00% | 33.33% | 85114953 |
| 32. | NW_001092736 | CTC | 4 | 36312 | 36324 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85114953 |
| 33. | NW_001092736 | GGC | 5 | 36546 | 36560 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85114953 |
| 34. | NW_001092736 | TTG | 5 | 38155 | 38169 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 35. | NW_001092736 | GAT | 4 | 38175 | 38186 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 36. | NW_001092736 | CAG | 4 | 43846 | 43856 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 37. | NW_001092736 | GAA | 4 | 45490 | 45501 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85114970 |
| 38. | NW_001092736 | GAA | 4 | 46206 | 46217 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85114970 |
| 39. | NW_001092736 | ACC | 4 | 47647 | 47659 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 40. | NW_001092736 | GTC | 4 | 48008 | 48019 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85114975 |
| 41. | NW_001092736 | CAA | 4 | 48061 | 48072 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85114975 |
| 42. | NW_001092736 | TGG | 4 | 53510 | 53521 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85114988 |
| 43. | NW_001092736 | TTC | 4 | 55266 | 55277 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85114988 |
| 44. | NW_001092736 | TTC | 4 | 59129 | 59139 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 45. | NW_001092736 | CTT | 5 | 62241 | 62255 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85114996 |
| 46. | NW_001092736 | GCG | 4 | 63031 | 63043 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | 85114996 |
| 47. | NW_001092736 | TGT | 4 | 63306 | 63316 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | 85114996 |
| 48. | NW_001092736 | AGA | 4 | 63324 | 63335 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85114996 |
| 49. | NW_001092736 | GTG | 4 | 63592 | 63603 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85114996 |
| 50. | NW_001092736 | CTG | 6 | 64145 | 64165 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | 85115001 |
| 51. | NW_001092736 | GAA | 8 | 64534 | 64557 | 24 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 52. | NW_001092736 | GGA | 8 | 64546 | 64569 | 24 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 53. | NW_001092736 | AGG | 4 | 64803 | 64813 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 54. | NW_001092736 | CAA | 6 | 70229 | 70246 | 18 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 55. | NW_001092736 | CAG | 4 | 71316 | 71326 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85115014 |
| 56. | NW_001092736 | GTT | 4 | 73534 | 73545 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 57. | NW_001092736 | GTT | 4 | 73643 | 73654 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 58. | NW_001092736 | ATC | 4 | 73669 | 73679 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 59. | NW_001092736 | AAC | 8 | 74148 | 74172 | 25 | 66.67% | 0.00% | 0.00% | 33.33% | 85115018 |
| 60. | NW_001092736 | GAA | 4 | 75049 | 75059 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 61. | NW_001092736 | GCC | 4 | 79421 | 79431 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85115027 |
| 62. | NW_001092736 | GAA | 4 | 81556 | 81567 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 63. | NW_001092736 | CAT | 4 | 83633 | 83644 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 64. | NW_001092736 | GCA | 4 | 83717 | 83727 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85115034 |
| 65. | NW_001092736 | GTC | 5 | 86402 | 86416 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 66. | NW_001092736 | GTT | 5 | 86719 | 86734 | 16 | 0.00% | 66.67% | 33.33% | 0.00% | 85115037 |
| 67. | NW_001092736 | CAA | 16 | 89244 | 89291 | 48 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 68. | NW_001092736 | GCA | 4 | 89490 | 89501 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115042 |
| 69. | NW_001092736 | CGC | 4 | 90496 | 90506 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85115047 |
| 70. | NW_001092736 | GCG | 4 | 90958 | 90970 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | 85115047 |
| 71. | NW_001092736 | CGG | 4 | 92541 | 92551 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85115047 |
| 72. | NW_001092736 | GAG | 4 | 96356 | 96367 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 73. | NW_001092736 | GCG | 4 | 98556 | 98566 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85115055 |
| 74. | NW_001092736 | CGG | 4 | 100276 | 100287 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85115060 |
| 75. | NW_001092736 | TCT | 4 | 102498 | 102508 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 76. | NW_001092736 | CGC | 4 | 105174 | 105185 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85115067 |
| 77. | NW_001092736 | CAC | 5 | 105821 | 105835 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85115067 |
| 78. | NW_001092736 | AGG | 4 | 105852 | 105863 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85115067 |
| 79. | NW_001092736 | CGG | 4 | 108046 | 108057 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85115071 |
| 80. | NW_001092736 | GGT | 4 | 108086 | 108097 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85115071 |
| 81. | NW_001092736 | GCA | 4 | 108132 | 108143 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85115071 |
| 82. | NW_001092736 | AGG | 4 | 108656 | 108667 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85115071 |
| 83. | NW_001092736 | GAA | 4 | 110249 | 110259 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85115075 |
| 84. | NW_001092736 | TGG | 5 | 111296 | 111310 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 85. | NW_001092736 | TCA | 4 | 112192 | 112203 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85115080 |
| 86. | NW_001092736 | CAT | 4 | 112487 | 112498 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85115080 |
| 87. | NW_001092736 | TCC | 4 | 112564 | 112575 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85115080 |
| 88. | NW_001092736 | TGC | 4 | 115426 | 115437 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85115083 |
| 89. | NW_001092736 | TGC | 4 | 115579 | 115590 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85115083 |
| 90. | NW_001092736 | CAG | 4 | 116100 | 116110 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85115083 |
| 91. | NW_001092736 | GAT | 11 | 120000 | 120032 | 33 | 33.33% | 33.33% | 33.33% | 0.00% | 85115087 |
| 92. | NW_001092736 | GAC | 5 | 120030 | 120044 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85115087 |
| 93. | NW_001092736 | AGT | 4 | 120930 | 120941 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 94. | NW_001092736 | ACG | 4 | 121019 | 121030 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |