List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092728 | CTA | 4 | 225 | 235 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 2. | NW_001092728 | TAT | 4 | 729 | 739 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092728 | TAC | 4 | 1085 | 1096 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 4. | NW_001092728 | ATA | 4 | 1112 | 1123 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 5. | NW_001092728 | TAT | 4 | 1167 | 1177 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 6. | NW_001092728 | TTA | 5 | 1383 | 1397 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 7. | NW_001092728 | CTT | 5 | 2033 | 2047 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 8. | NW_001092728 | TAC | 4 | 2061 | 2071 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 9. | NW_001092728 | TAT | 5 | 2388 | 2402 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 10. | NW_001092728 | GAG | 4 | 2715 | 2725 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 11. | NW_001092728 | CCA | 4 | 3257 | 3271 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85113511 |
| 12. | NW_001092728 | GTC | 4 | 4306 | 4317 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85113511 |
| 13. | NW_001092728 | TCA | 4 | 5978 | 5989 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85113515 |
| 14. | NW_001092728 | AGT | 4 | 9021 | 9032 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 15. | NW_001092728 | GCT | 4 | 10065 | 10077 | 13 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 16. | NW_001092728 | GCA | 4 | 12613 | 12624 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85113520 |
| 17. | NW_001092728 | AAT | 4 | 12726 | 12736 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 18. | NW_001092728 | GGT | 5 | 14360 | 14375 | 16 | 0.00% | 33.33% | 66.67% | 0.00% | 85113524 |
| 19. | NW_001092728 | TGA | 4 | 14464 | 14475 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85113524 |
| 20. | NW_001092728 | ATG | 4 | 14604 | 14615 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85113524 |
| 21. | NW_001092728 | TTG | 4 | 15797 | 15807 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 22. | NW_001092728 | AAC | 4 | 18675 | 18685 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | 85113539 |
| 23. | NW_001092728 | TGT | 4 | 19221 | 19231 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | 85113539 |
| 24. | NW_001092728 | AGA | 4 | 20587 | 20598 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85113543 |
| 25. | NW_001092728 | TCA | 12 | 22788 | 22823 | 36 | 33.33% | 33.33% | 0.00% | 33.33% | 85113547 |
| 26. | NW_001092728 | ATA | 4 | 23851 | 23861 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 27. | NW_001092728 | TTC | 4 | 24376 | 24386 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 28. | NW_001092728 | CAC | 4 | 25872 | 25883 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 29. | NW_001092728 | TTG | 4 | 27276 | 27287 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 30. | NW_001092728 | TCT | 4 | 27472 | 27483 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 31. | NW_001092728 | AAC | 4 | 30171 | 30181 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | 85113561 |
| 32. | NW_001092728 | TCC | 4 | 31356 | 31366 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85113561 |
| 33. | NW_001092728 | CCT | 9 | 31371 | 31397 | 27 | 0.00% | 33.33% | 0.00% | 66.67% | 85113561 |
| 34. | NW_001092728 | GGT | 4 | 31759 | 31770 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85113561 |
| 35. | NW_001092728 | CAG | 4 | 32317 | 32328 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85113565 |
| 36. | NW_001092728 | GTT | 7 | 32366 | 32386 | 21 | 0.00% | 66.67% | 33.33% | 0.00% | 85113565 |
| 37. | NW_001092728 | ATC | 4 | 32628 | 32639 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85113565 |
| 38. | NW_001092728 | AAC | 4 | 34724 | 34734 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 39. | NW_001092728 | GCA | 4 | 39418 | 39429 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 40. | NW_001092728 | CAG | 5 | 40529 | 40543 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85113573 |
| 41. | NW_001092728 | AGA | 4 | 42812 | 42823 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85113573 |
| 42. | NW_001092728 | ATG | 4 | 43315 | 43326 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85113573 |
| 43. | NW_001092728 | CAG | 4 | 44227 | 44237 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 44. | NW_001092728 | TCG | 4 | 47461 | 47471 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85113577 |
| 45. | NW_001092728 | GGT | 4 | 48219 | 48230 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85113577 |
| 46. | NW_001092728 | GGA | 9 | 48399 | 48424 | 26 | 33.33% | 0.00% | 66.67% | 0.00% | 85113577 |
| 47. | NW_001092728 | AGC | 4 | 49864 | 49874 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85113581 |
| 48. | NW_001092728 | CTT | 4 | 50410 | 50421 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85113581 |
| 49. | NW_001092728 | CTC | 4 | 50425 | 50436 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85113581 |
| 50. | NW_001092728 | TCC | 4 | 53452 | 53462 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 51. | NW_001092728 | CGG | 4 | 56734 | 56745 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85113591 |
| 52. | NW_001092728 | TGA | 4 | 56856 | 56867 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85113591 |
| 53. | NW_001092728 | GAG | 5 | 57143 | 57157 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85113591 |
| 54. | NW_001092728 | CTC | 4 | 57607 | 57617 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 55. | NW_001092728 | GAG | 4 | 57894 | 57905 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 56. | NW_001092728 | TCA | 4 | 58068 | 58080 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 57. | NW_001092728 | AAG | 4 | 59736 | 59747 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 58. | NW_001092728 | GGC | 4 | 60257 | 60268 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85113595 |
| 59. | NW_001092728 | TGC | 4 | 62804 | 62815 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85113595 |
| 60. | NW_001092728 | GGT | 4 | 63320 | 63331 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 61. | NW_001092728 | CAC | 4 | 65919 | 65930 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 62. | NW_001092728 | ATG | 4 | 67448 | 67458 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 63. | NW_001092728 | CAA | 5 | 68484 | 68498 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 64. | NW_001092728 | CAA | 5 | 69915 | 69929 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 65. | NW_001092728 | TTC | 4 | 71632 | 71644 | 13 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 66. | NW_001092728 | TGC | 4 | 74757 | 74767 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 67. | NW_001092728 | GCT | 5 | 78322 | 78335 | 14 | 0.00% | 33.33% | 33.33% | 33.33% | 85113605 |
| 68. | NW_001092728 | CCT | 4 | 81259 | 81270 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85113609 |
| 69. | NW_001092728 | GAG | 4 | 82067 | 82077 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85113609 |
| 70. | NW_001092728 | TGA | 4 | 82159 | 82170 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85113609 |
| 71. | NW_001092728 | CTA | 4 | 82851 | 82861 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 72. | NW_001092728 | CTA | 4 | 82901 | 82912 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 73. | NW_001092728 | TCC | 9 | 83185 | 83210 | 26 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 74. | NW_001092728 | TAT | 4 | 85053 | 85063 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 75. | NW_001092728 | TTA | 4 | 85111 | 85122 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 76. | NW_001092728 | CCA | 4 | 86124 | 86135 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 77. | NW_001092728 | CAG | 4 | 86457 | 86468 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 78. | NW_001092728 | ATG | 4 | 87543 | 87554 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85113614 |
| 79. | NW_001092728 | GAT | 4 | 87635 | 87646 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85113614 |
| 80. | NW_001092728 | CGC | 4 | 88235 | 88245 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85113614 |
| 81. | NW_001092728 | GTT | 4 | 88700 | 88711 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 82. | NW_001092728 | GGA | 4 | 91007 | 91017 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85113618 |
| 83. | NW_001092728 | CAA | 4 | 96179 | 96189 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 84. | NW_001092728 | TAC | 4 | 97048 | 97059 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 85. | NW_001092728 | TCA | 7 | 97559 | 97579 | 21 | 33.33% | 33.33% | 0.00% | 33.33% | 85113627 |
| 86. | NW_001092728 | CAG | 4 | 97613 | 97625 | 13 | 33.33% | 0.00% | 33.33% | 33.33% | 85113627 |
| 87. | NW_001092728 | CCT | 5 | 97893 | 97907 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85113627 |