List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092728 | CCCT | 3 | 200 | 210 | 11 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 2. | NW_001092728 | TAAT | 4 | 993 | 1009 | 17 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092728 | AGAT | 3 | 4982 | 4993 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 4. | NW_001092728 | TCAG | 3 | 11548 | 11559 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 85113520 |
| 5. | NW_001092728 | GTCT | 3 | 11959 | 11969 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85113520 |
| 6. | NW_001092728 | GCAA | 3 | 13186 | 13197 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 7. | NW_001092728 | ATGG | 3 | 14380 | 14391 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | 85113524 |
| 8. | NW_001092728 | CAAT | 3 | 17926 | 17937 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 9. | NW_001092728 | AGCA | 3 | 18659 | 18670 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85113539 |
| 10. | NW_001092728 | CGAT | 4 | 23257 | 23271 | 15 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 11. | NW_001092728 | CAAA | 3 | 33447 | 33457 | 11 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 12. | NW_001092728 | CGGC | 3 | 33627 | 33639 | 13 | 0.00% | 0.00% | 50.00% | 50.00% | Non-Coding |
| 13. | NW_001092728 | CCAC | 4 | 34737 | 34752 | 16 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 14. | NW_001092728 | TGTT | 3 | 35358 | 35369 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 15. | NW_001092728 | AAAC | 3 | 35715 | 35726 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | 85113569 |
| 16. | NW_001092728 | AGCA | 3 | 36865 | 36876 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85113569 |
| 17. | NW_001092728 | CCCA | 3 | 37001 | 37011 | 11 | 25.00% | 0.00% | 0.00% | 75.00% | 85113569 |
| 18. | NW_001092728 | GGTC | 3 | 38999 | 39010 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 19. | NW_001092728 | CATC | 4 | 40173 | 40188 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 20. | NW_001092728 | GCGA | 3 | 43879 | 43891 | 13 | 25.00% | 0.00% | 50.00% | 25.00% | 85113573 |
| 21. | NW_001092728 | TGCG | 3 | 44457 | 44467 | 11 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 22. | NW_001092728 | CTTG | 3 | 44799 | 44809 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 23. | NW_001092728 | TAGG | 3 | 44863 | 44874 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 24. | NW_001092728 | CAAC | 3 | 45171 | 45181 | 11 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 25. | NW_001092728 | ATTG | 3 | 45409 | 45420 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 26. | NW_001092728 | TTGT | 3 | 48710 | 48721 | 12 | 0.00% | 75.00% | 25.00% | 0.00% | Non-Coding |
| 27. | NW_001092728 | AATG | 3 | 49129 | 49141 | 13 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 28. | NW_001092728 | TCTG | 3 | 52392 | 52402 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 29. | NW_001092728 | CATA | 3 | 53907 | 53918 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 30. | NW_001092728 | CATA | 4 | 53923 | 53938 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 31. | NW_001092728 | AGCC | 3 | 54599 | 54609 | 11 | 25.00% | 0.00% | 25.00% | 50.00% | 85113586 |
| 32. | NW_001092728 | TTCA | 3 | 56213 | 56224 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 33. | NW_001092728 | CCTT | 3 | 56231 | 56242 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 34. | NW_001092728 | ATCC | 3 | 56251 | 56262 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 35. | NW_001092728 | CTTC | 7 | 56326 | 56353 | 28 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 36. | NW_001092728 | TAGG | 5 | 56884 | 56903 | 20 | 25.00% | 25.00% | 50.00% | 0.00% | 85113591 |
| 37. | NW_001092728 | ATTG | 3 | 63650 | 63660 | 11 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 38. | NW_001092728 | CGGG | 3 | 63778 | 63788 | 11 | 0.00% | 0.00% | 75.00% | 25.00% | Non-Coding |
| 39. | NW_001092728 | TCGA | 3 | 65124 | 65135 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 40. | NW_001092728 | CCTG | 3 | 65746 | 65757 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 41. | NW_001092728 | AGGG | 3 | 67190 | 67200 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 42. | NW_001092728 | TTGC | 3 | 68129 | 68140 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 43. | NW_001092728 | TGGA | 3 | 68171 | 68182 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 44. | NW_001092728 | AAAG | 3 | 68364 | 68374 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 45. | NW_001092728 | GACC | 4 | 74226 | 74241 | 16 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 46. | NW_001092728 | GCAA | 4 | 74526 | 74541 | 16 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 47. | NW_001092728 | GGTA | 5 | 74616 | 74635 | 20 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 48. | NW_001092728 | TAGG | 5 | 74689 | 74708 | 20 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 49. | NW_001092728 | GTAG | 14 | 75200 | 75255 | 56 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 50. | NW_001092728 | GTAG | 6 | 75507 | 75530 | 24 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 51. | NW_001092728 | CATT | 8 | 75639 | 75670 | 32 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 52. | NW_001092728 | CTTG | 3 | 75991 | 76001 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 53. | NW_001092728 | CATG | 3 | 76027 | 76038 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 54. | NW_001092728 | AAAG | 3 | 76226 | 76238 | 13 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 55. | NW_001092728 | CCCA | 3 | 78119 | 78129 | 11 | 25.00% | 0.00% | 0.00% | 75.00% | 85113605 |
| 56. | NW_001092728 | ACAA | 3 | 78478 | 78489 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | 85113605 |
| 57. | NW_001092728 | ATGC | 3 | 80609 | 80619 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 58. | NW_001092728 | GTTA | 3 | 84141 | 84152 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 59. | NW_001092728 | AGAC | 3 | 87268 | 87279 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 85113614 |
| 60. | NW_001092728 | TGGC | 3 | 88965 | 88977 | 13 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 61. | NW_001092728 | GCCT | 3 | 90432 | 90442 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | 85113618 |
| 62. | NW_001092728 | ATCC | 3 | 90674 | 90684 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85113618 |
| 63. | NW_001092728 | TCCC | 3 | 93862 | 93872 | 11 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 64. | NW_001092728 | TGGC | 4 | 95042 | 95057 | 16 | 0.00% | 25.00% | 50.00% | 25.00% | 85113622 |
| 65. | NW_001092728 | ACTG | 3 | 96641 | 96652 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 66. | NW_001092728 | GGAT | 3 | 98255 | 98265 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | 85113627 |
| 67. | NW_001092728 | GAAA | 3 | 99685 | 99695 | 11 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |