List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092727 | GCA | 4 | 25 | 35 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 2. | NW_001092727 | GTT | 4 | 778 | 789 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 3. | NW_001092727 | ACA | 4 | 3108 | 3119 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 4. | NW_001092727 | GCG | 6 | 5415 | 5432 | 18 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 5. | NW_001092727 | TCA | 5 | 6589 | 6603 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | 85113354 |
| 6. | NW_001092727 | TGA | 6 | 6822 | 6839 | 18 | 33.33% | 33.33% | 33.33% | 0.00% | 85113354 |
| 7. | NW_001092727 | TCT | 4 | 7171 | 7182 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85113354 |
| 8. | NW_001092727 | CTC | 4 | 7794 | 7805 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85113354 |
| 9. | NW_001092727 | CTC | 4 | 9796 | 9806 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85113358 |
| 10. | NW_001092727 | CTC | 4 | 12832 | 12843 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 11. | NW_001092727 | CAC | 4 | 12874 | 12884 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 12. | NW_001092727 | GAT | 4 | 13231 | 13243 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 13. | NW_001092727 | CCT | 4 | 15862 | 15872 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85113362 |
| 14. | NW_001092727 | AGA | 4 | 16401 | 16412 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 15. | NW_001092727 | CAT | 4 | 18955 | 18966 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 16. | NW_001092727 | GAA | 4 | 19852 | 19863 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85113370 |
| 17. | NW_001092727 | GTC | 4 | 20050 | 20061 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85113370 |
| 18. | NW_001092727 | GTC | 4 | 20332 | 20343 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85113370 |
| 19. | NW_001092727 | TGA | 9 | 20517 | 20543 | 27 | 33.33% | 33.33% | 33.33% | 0.00% | 85113370 |
| 20. | NW_001092727 | CGA | 4 | 20541 | 20552 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85113370 |
| 21. | NW_001092727 | CGG | 4 | 20615 | 20626 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85113370 |
| 22. | NW_001092727 | GAT | 4 | 21997 | 22008 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85113374 |
| 23. | NW_001092727 | GAC | 4 | 22233 | 22244 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85113374 |
| 24. | NW_001092727 | AAG | 4 | 22377 | 22387 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85113374 |
| 25. | NW_001092727 | GAT | 8 | 23815 | 23838 | 24 | 33.33% | 33.33% | 33.33% | 0.00% | 85113374 |
| 26. | NW_001092727 | ACA | 7 | 24574 | 24594 | 21 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 27. | NW_001092727 | GTT | 4 | 25370 | 25381 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 28. | NW_001092727 | CAA | 4 | 26533 | 26544 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85113379 |
| 29. | NW_001092727 | TGA | 4 | 28151 | 28162 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 30. | NW_001092727 | TGA | 4 | 28204 | 28215 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 31. | NW_001092727 | CCA | 4 | 29884 | 29895 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85113384 |
| 32. | NW_001092727 | AAG | 4 | 29980 | 29991 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85113384 |
| 33. | NW_001092727 | GCC | 4 | 30054 | 30065 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85113384 |
| 34. | NW_001092727 | GGA | 4 | 30494 | 30504 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85113384 |
| 35. | NW_001092727 | CGG | 4 | 30556 | 30568 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | 85113384 |
| 36. | NW_001092727 | AGC | 6 | 30763 | 30781 | 19 | 33.33% | 0.00% | 33.33% | 33.33% | 85113384 |
| 37. | NW_001092727 | ATG | 4 | 31245 | 31256 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 38. | NW_001092727 | TGT | 7 | 31306 | 31326 | 21 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 39. | NW_001092727 | CTC | 4 | 31439 | 31449 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 40. | NW_001092727 | GCG | 4 | 31755 | 31766 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85113388 |
| 41. | NW_001092727 | GCG | 4 | 31782 | 31793 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85113388 |
| 42. | NW_001092727 | CGG | 4 | 31795 | 31806 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85113388 |
| 43. | NW_001092727 | GCT | 4 | 32079 | 32090 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85113388 |
| 44. | NW_001092727 | GTT | 4 | 32178 | 32189 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85113388 |
| 45. | NW_001092727 | ATC | 4 | 34219 | 34230 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 46. | NW_001092727 | ACC | 7 | 34278 | 34298 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 47. | NW_001092727 | GGC | 5 | 37010 | 37024 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85113398 |
| 48. | NW_001092727 | GGT | 4 | 37019 | 37030 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85113398 |
| 49. | NW_001092727 | GAT | 6 | 37439 | 37456 | 18 | 33.33% | 33.33% | 33.33% | 0.00% | 85113398 |
| 50. | NW_001092727 | CTC | 4 | 38003 | 38013 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85113402 |
| 51. | NW_001092727 | TCG | 4 | 38268 | 38279 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85113402 |
| 52. | NW_001092727 | AAG | 4 | 40301 | 40312 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85113406 |
| 53. | NW_001092727 | CAC | 4 | 40450 | 40460 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85113406 |
| 54. | NW_001092727 | CAG | 4 | 40634 | 40648 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85113406 |
| 55. | NW_001092727 | TTC | 4 | 41505 | 41515 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 56. | NW_001092727 | AAG | 5 | 43490 | 43504 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85113411 |
| 57. | NW_001092727 | AAG | 5 | 43586 | 43600 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85113411 |
| 58. | NW_001092727 | AGA | 4 | 43611 | 43622 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85113411 |
| 59. | NW_001092727 | GCT | 7 | 44201 | 44221 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | 85113411 |
| 60. | NW_001092727 | GGT | 4 | 44291 | 44302 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85113411 |
| 61. | NW_001092727 | GGT | 12 | 44324 | 44359 | 36 | 0.00% | 33.33% | 66.67% | 0.00% | 85113411 |
| 62. | NW_001092727 | GGT | 4 | 44414 | 44425 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85113411 |
| 63. | NW_001092727 | GGT | 5 | 44435 | 44449 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85113411 |
| 64. | NW_001092727 | GTA | 7 | 45865 | 45884 | 20 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 65. | NW_001092727 | TGT | 4 | 46063 | 46073 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 66. | NW_001092727 | CTT | 5 | 46210 | 46223 | 14 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 67. | NW_001092727 | GGT | 4 | 47185 | 47196 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 68. | NW_001092727 | AGT | 5 | 47904 | 47918 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 69. | NW_001092727 | AAC | 4 | 49243 | 49253 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 70. | NW_001092727 | CTG | 7 | 50242 | 50262 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | 85113419 |
| 71. | NW_001092727 | GAG | 5 | 50349 | 50363 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85113419 |
| 72. | NW_001092727 | GAT | 4 | 50430 | 50441 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85113419 |
| 73. | NW_001092727 | CAA | 5 | 50595 | 50609 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85113419 |
| 74. | NW_001092727 | CGG | 4 | 51133 | 51143 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85113419 |
| 75. | NW_001092727 | GAG | 8 | 52751 | 52775 | 25 | 33.33% | 0.00% | 66.67% | 0.00% | 85113423 |
| 76. | NW_001092727 | GCT | 4 | 53052 | 53063 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85113423 |
| 77. | NW_001092727 | ACA | 4 | 53264 | 53278 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 78. | NW_001092727 | ACA | 4 | 54094 | 54105 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 79. | NW_001092727 | ACT | 5 | 54301 | 54314 | 14 | 33.33% | 33.33% | 0.00% | 33.33% | 85113428 |
| 80. | NW_001092727 | CAA | 10 | 54393 | 54422 | 30 | 66.67% | 0.00% | 0.00% | 33.33% | 85113428 |
| 81. | NW_001092727 | AGA | 5 | 54567 | 54581 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85113428 |
| 82. | NW_001092727 | TGT | 4 | 54907 | 54918 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85113428 |
| 83. | NW_001092727 | ACC | 4 | 55472 | 55483 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85113432 |
| 84. | NW_001092727 | CCT | 5 | 55934 | 55948 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85113432 |
| 85. | NW_001092727 | GCT | 4 | 56096 | 56107 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85113432 |
| 86. | NW_001092727 | TTG | 5 | 56469 | 56486 | 18 | 0.00% | 66.67% | 33.33% | 0.00% | 85113432 |
| 87. | NW_001092727 | GTC | 7 | 56523 | 56543 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | 85113432 |
| 88. | NW_001092727 | GGC | 4 | 56841 | 56852 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85113432 |
| 89. | NW_001092727 | GTT | 4 | 57061 | 57073 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 90. | NW_001092727 | CGC | 4 | 59254 | 59265 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85113437 |
| 91. | NW_001092727 | CAG | 4 | 59359 | 59370 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85113437 |
| 92. | NW_001092727 | CGA | 4 | 60571 | 60582 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85113437 |
| 93. | NW_001092727 | CCT | 4 | 60788 | 60799 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85113437 |
| 94. | NW_001092727 | TGG | 4 | 60920 | 60931 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85113437 |
| 95. | NW_001092727 | TTG | 8 | 61591 | 61614 | 24 | 0.00% | 66.67% | 33.33% | 0.00% | 85113437 |
| 96. | NW_001092727 | GAT | 4 | 62750 | 62761 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 97. | NW_001092727 | AGA | 4 | 63390 | 63400 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 98. | NW_001092727 | AGC | 4 | 63754 | 63764 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 99. | NW_001092727 | GAG | 6 | 64664 | 64680 | 17 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 100. | NW_001092727 | GGT | 4 | 65091 | 65101 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 101. | NW_001092727 | GAT | 9 | 65835 | 65861 | 27 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 102. | NW_001092727 | TCT | 4 | 67047 | 67058 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 103. | NW_001092727 | GTT | 4 | 68303 | 68314 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 104. | NW_001092727 | CGC | 6 | 69043 | 69059 | 17 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 105. | NW_001092727 | CGA | 4 | 71959 | 71970 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 106. | NW_001092727 | CAG | 5 | 74733 | 74747 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85113450 |
| 107. | NW_001092727 | TGA | 4 | 76122 | 76133 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 108. | NW_001092727 | CCA | 7 | 77253 | 77273 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 109. | NW_001092727 | AAG | 5 | 77427 | 77440 | 14 | 66.67% | 0.00% | 33.33% | 0.00% | 85113454 |
| 110. | NW_001092727 | TCA | 4 | 78747 | 78759 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 111. | NW_001092727 | TCC | 4 | 78795 | 78806 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 112. | NW_001092727 | GGC | 4 | 80916 | 80927 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85113458 |
| 113. | NW_001092727 | TCT | 4 | 81311 | 81321 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85113458 |
| 114. | NW_001092727 | CCG | 4 | 82117 | 82127 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 115. | NW_001092727 | GGT | 15 | 82678 | 82722 | 45 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 116. | NW_001092727 | GAG | 19 | 82788 | 82844 | 57 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 117. | NW_001092727 | TCT | 4 | 83644 | 83655 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 118. | NW_001092727 | TCG | 6 | 86636 | 86653 | 18 | 0.00% | 33.33% | 33.33% | 33.33% | 85113462 |
| 119. | NW_001092727 | CAC | 11 | 89019 | 89051 | 33 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 120. | NW_001092727 | CCG | 5 | 89653 | 89667 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85113467 |
| 121. | NW_001092727 | GCA | 4 | 91145 | 91156 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85113467 |
| 122. | NW_001092727 | CAT | 5 | 92947 | 92961 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 123. | NW_001092727 | TAC | 4 | 93085 | 93095 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 124. | NW_001092727 | GAA | 15 | 94397 | 94441 | 45 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |