List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092617 | TTA | 4 | 1085 | 1096 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092617 | TGT | 4 | 2299 | 2310 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 3. | NW_001092617 | GAG | 4 | 2428 | 2438 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 4. | NW_001092617 | CTC | 4 | 3864 | 3875 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85110156 |
| 5. | NW_001092617 | TGT | 4 | 4065 | 4079 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85110156 |
| 6. | NW_001092617 | GAA | 8 | 5179 | 5201 | 23 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 7. | NW_001092617 | GAA | 4 | 5311 | 5321 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 8. | NW_001092617 | ACC | 5 | 6139 | 6152 | 14 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 9. | NW_001092617 | TCG | 5 | 6485 | 6499 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 10. | NW_001092617 | TCC | 13 | 6560 | 6599 | 40 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 11. | NW_001092617 | CTT | 4 | 6702 | 6713 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 12. | NW_001092617 | CTC | 4 | 7145 | 7159 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85110158 |
| 13. | NW_001092617 | GTT | 8 | 7862 | 7885 | 24 | 0.00% | 66.67% | 33.33% | 0.00% | 85110158 |
| 14. | NW_001092617 | GTG | 4 | 8009 | 8020 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85110158 |
| 15. | NW_001092617 | TCG | 5 | 8229 | 8243 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85110158 |
| 16. | NW_001092617 | CCT | 5 | 8272 | 8286 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85110158 |
| 17. | NW_001092617 | GTG | 4 | 8571 | 8582 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85110158 |
| 18. | NW_001092617 | TTG | 17 | 8652 | 8703 | 52 | 0.00% | 66.67% | 33.33% | 0.00% | 85110158 |
| 19. | NW_001092617 | AAG | 4 | 8852 | 8863 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 20. | NW_001092617 | CTG | 6 | 10333 | 10349 | 17 | 0.00% | 33.33% | 33.33% | 33.33% | 85110160 |
| 21. | NW_001092617 | GCT | 4 | 10349 | 10360 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85110160 |
| 22. | NW_001092617 | CCG | 4 | 10440 | 10451 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85110160 |
| 23. | NW_001092617 | GCG | 4 | 10458 | 10469 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85110160 |
| 24. | NW_001092617 | TGG | 4 | 10643 | 10655 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | 85110160 |
| 25. | NW_001092617 | TGT | 7 | 10742 | 10762 | 21 | 0.00% | 66.67% | 33.33% | 0.00% | 85110160 |
| 26. | NW_001092617 | GTG | 4 | 10811 | 10822 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85110160 |
| 27. | NW_001092617 | CAC | 17 | 11783 | 11833 | 51 | 33.33% | 0.00% | 0.00% | 66.67% | 85110160 |
| 28. | NW_001092617 | CAC | 7 | 11891 | 11911 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | 85110160 |
| 29. | NW_001092617 | GTC | 4 | 12270 | 12281 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85110160 |
| 30. | NW_001092617 | GTC | 5 | 12363 | 12377 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85110160 |
| 31. | NW_001092617 | TCG | 4 | 12403 | 12414 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85110160 |
| 32. | NW_001092617 | TCA | 4 | 12412 | 12423 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85110160 |
| 33. | NW_001092617 | TGC | 5 | 12596 | 12610 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85110160 |
| 34. | NW_001092617 | CGC | 5 | 12611 | 12625 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85110160 |
| 35. | NW_001092617 | ACC | 5 | 12627 | 12641 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85110160 |
| 36. | NW_001092617 | GCC | 5 | 12705 | 12719 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85110160 |
| 37. | NW_001092617 | GGT | 4 | 12744 | 12755 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85110160 |
| 38. | NW_001092617 | GTA | 4 | 12783 | 12795 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | 85110160 |
| 39. | NW_001092617 | TGC | 4 | 13067 | 13078 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85110160 |
| 40. | NW_001092617 | GTG | 5 | 13125 | 13139 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85110160 |
| 41. | NW_001092617 | GTG | 5 | 13191 | 13205 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85110160 |
| 42. | NW_001092617 | TTG | 8 | 13316 | 13340 | 25 | 0.00% | 66.67% | 33.33% | 0.00% | 85110160 |
| 43. | NW_001092617 | AAC | 4 | 13973 | 13987 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 44. | NW_001092617 | GAT | 4 | 14951 | 14961 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 45. | NW_001092617 | CAG | 4 | 15010 | 15024 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 46. | NW_001092617 | CAA | 4 | 15200 | 15210 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 47. | NW_001092617 | GTG | 4 | 15319 | 15329 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 48. | NW_001092617 | CAT | 4 | 17804 | 17815 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 49. | NW_001092617 | ACG | 9 | 17840 | 17866 | 27 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 50. | NW_001092617 | AGT | 4 | 18133 | 18144 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 51. | NW_001092617 | GAC | 4 | 19503 | 19514 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85110166 |
| 52. | NW_001092617 | GTT | 4 | 22277 | 22288 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85110168 |
| 53. | NW_001092617 | GCC | 4 | 22401 | 22412 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85110168 |
| 54. | NW_001092617 | TTG | 9 | 22992 | 23018 | 27 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 55. | NW_001092617 | CTT | 5 | 23660 | 23673 | 14 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 56. | NW_001092617 | CCA | 7 | 29998 | 30018 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | 85110174 |
| 57. | NW_001092617 | TCA | 4 | 31625 | 31636 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 58. | NW_001092617 | TCA | 4 | 31747 | 31758 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 59. | NW_001092617 | TGA | 4 | 32139 | 32150 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85110176 |
| 60. | NW_001092617 | TGA | 4 | 32644 | 32654 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 61. | NW_001092617 | TTG | 4 | 32801 | 32812 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 62. | NW_001092617 | GAG | 4 | 40425 | 40437 | 13 | 33.33% | 0.00% | 66.67% | 0.00% | 85110188 |
| 63. | NW_001092617 | TGA | 4 | 42473 | 42485 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | 85110190 |
| 64. | NW_001092617 | TGT | 4 | 43098 | 43108 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | 85110190 |
| 65. | NW_001092617 | GGT | 9 | 44662 | 44688 | 27 | 0.00% | 33.33% | 66.67% | 0.00% | 85110196 |
| 66. | NW_001092617 | CCG | 7 | 45810 | 45830 | 21 | 0.00% | 0.00% | 33.33% | 66.67% | 85110196 |
| 67. | NW_001092617 | TGC | 4 | 46880 | 46891 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85110196 |
| 68. | NW_001092617 | CCG | 4 | 47053 | 47064 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85110196 |
| 69. | NW_001092617 | GAA | 4 | 47306 | 47317 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85110196 |
| 70. | NW_001092617 | ATG | 4 | 47869 | 47880 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85110196 |
| 71. | NW_001092617 | GAG | 4 | 47883 | 47894 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85110196 |
| 72. | NW_001092617 | GAG | 7 | 47904 | 47924 | 21 | 33.33% | 0.00% | 66.67% | 0.00% | 85110196 |
| 73. | NW_001092617 | GAG | 7 | 47935 | 47957 | 23 | 33.33% | 0.00% | 66.67% | 0.00% | 85110196 |
| 74. | NW_001092617 | AGA | 4 | 47972 | 47983 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85110196 |
| 75. | NW_001092617 | GGA | 4 | 48027 | 48037 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85110196 |
| 76. | NW_001092617 | GAA | 4 | 48050 | 48061 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85110196 |
| 77. | NW_001092617 | TGT | 5 | 49269 | 49283 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 78. | NW_001092617 | GGA | 4 | 50506 | 50517 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85110198 |
| 79. | NW_001092617 | GGA | 4 | 50861 | 50875 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85110198 |
| 80. | NW_001092617 | TGA | 4 | 52542 | 52553 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85110200 |
| 81. | NW_001092617 | CAG | 4 | 53748 | 53759 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 82. | NW_001092617 | CGC | 4 | 53992 | 54003 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85110202 |
| 83. | NW_001092617 | GGT | 4 | 55186 | 55197 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85110202 |
| 84. | NW_001092617 | GTT | 4 | 55829 | 55841 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 85. | NW_001092617 | ATC | 4 | 58121 | 58132 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85110204 |
| 86. | NW_001092617 | CAC | 7 | 58166 | 58185 | 20 | 33.33% | 0.00% | 0.00% | 66.67% | 85110204 |
| 87. | NW_001092617 | GAC | 4 | 58461 | 58471 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85110204 |
| 88. | NW_001092617 | GAG | 4 | 58661 | 58672 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85110204 |
| 89. | NW_001092617 | GGA | 4 | 58780 | 58792 | 13 | 33.33% | 0.00% | 66.67% | 0.00% | 85110204 |
| 90. | NW_001092617 | TAG | 4 | 59011 | 59022 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |