List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092594 | ACC | 4 | 4945 | 4956 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109821 |
| 2. | NW_001092594 | TCA | 5 | 6167 | 6181 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | 85109823 |
| 3. | NW_001092594 | CAG | 4 | 6864 | 6874 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85109823 |
| 4. | NW_001092594 | CTG | 4 | 11049 | 11060 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 5. | NW_001092594 | GTG | 4 | 12106 | 12117 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 6. | NW_001092594 | AAG | 4 | 12366 | 12377 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 7. | NW_001092594 | GAG | 4 | 13761 | 13772 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109827 |
| 8. | NW_001092594 | GTG | 6 | 15212 | 15229 | 18 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 9. | NW_001092594 | CTT | 4 | 19103 | 19113 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 10. | NW_001092594 | ATG | 4 | 20779 | 20790 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 11. | NW_001092594 | CTC | 4 | 26841 | 26854 | 14 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 12. | NW_001092594 | TAG | 4 | 28286 | 28296 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 13. | NW_001092594 | TGA | 5 | 32884 | 32898 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85109833 |
| 14. | NW_001092594 | TCC | 4 | 35676 | 35687 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109835 |
| 15. | NW_001092594 | GGC | 4 | 35709 | 35720 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85109835 |
| 16. | NW_001092594 | GAT | 4 | 37772 | 37783 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 17. | NW_001092594 | CAA | 4 | 39805 | 39816 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 18. | NW_001092594 | GTG | 4 | 43220 | 43230 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 19. | NW_001092594 | CTG | 4 | 43850 | 43860 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 20. | NW_001092594 | CCA | 9 | 44255 | 44281 | 27 | 33.33% | 0.00% | 0.00% | 66.67% | 85109839 |
| 21. | NW_001092594 | GAT | 4 | 46754 | 46764 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 22. | NW_001092594 | CAG | 4 | 47852 | 47863 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 23. | NW_001092594 | CAT | 4 | 47858 | 47869 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 24. | NW_001092594 | TGA | 4 | 51121 | 51132 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85109843 |
| 25. | NW_001092594 | GAG | 4 | 53186 | 53197 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109843 |
| 26. | NW_001092594 | GGC | 4 | 53203 | 53214 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85109843 |
| 27. | NW_001092594 | GAA | 4 | 53690 | 53701 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85109843 |
| 28. | NW_001092594 | GAG | 5 | 53783 | 53797 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85109843 |
| 29. | NW_001092594 | ATG | 4 | 53799 | 53810 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85109843 |
| 30. | NW_001092594 | GAA | 4 | 53897 | 53909 | 13 | 66.67% | 0.00% | 33.33% | 0.00% | 85109843 |
| 31. | NW_001092594 | GGC | 4 | 53978 | 53988 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85109843 |
| 32. | NW_001092594 | TTG | 5 | 55441 | 55456 | 16 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 33. | NW_001092594 | ATA | 4 | 56055 | 56066 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 34. | NW_001092594 | ATC | 4 | 56541 | 56552 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 35. | NW_001092594 | GTC | 4 | 56780 | 56790 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85109845 |
| 36. | NW_001092594 | GCT | 9 | 57702 | 57728 | 27 | 0.00% | 33.33% | 33.33% | 33.33% | 85109845 |
| 37. | NW_001092594 | CTG | 5 | 57742 | 57756 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85109845 |
| 38. | NW_001092594 | TGT | 4 | 57761 | 57772 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85109845 |
| 39. | NW_001092594 | TGC | 9 | 57770 | 57796 | 27 | 0.00% | 33.33% | 33.33% | 33.33% | 85109845 |
| 40. | NW_001092594 | GCT | 4 | 57819 | 57830 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109845 |
| 41. | NW_001092594 | GCA | 4 | 58313 | 58324 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109845 |
| 42. | NW_001092594 | CTG | 11 | 58636 | 58668 | 33 | 0.00% | 33.33% | 33.33% | 33.33% | 85109845 |
| 43. | NW_001092594 | TGG | 4 | 58676 | 58687 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109845 |
| 44. | NW_001092594 | GAC | 4 | 62414 | 62425 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109849 |
| 45. | NW_001092594 | TCA | 4 | 63638 | 63649 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 46. | NW_001092594 | CCA | 8 | 63647 | 63671 | 25 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 47. | NW_001092594 | GCC | 4 | 67792 | 67803 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 48. | NW_001092594 | AAC | 4 | 75537 | 75548 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85109857 |
| 49. | NW_001092594 | AGG | 4 | 76555 | 76566 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109859 |
| 50. | NW_001092594 | GGT | 4 | 76568 | 76579 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109859 |
| 51. | NW_001092594 | CCT | 4 | 78548 | 78560 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 52. | NW_001092594 | GTT | 4 | 78717 | 78727 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 53. | NW_001092594 | GAG | 7 | 81995 | 82015 | 21 | 33.33% | 0.00% | 66.67% | 0.00% | 85109861 |
| 54. | NW_001092594 | GGC | 4 | 82603 | 82613 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85109861 |
| 55. | NW_001092594 | CAG | 4 | 83308 | 83318 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85109861 |
| 56. | NW_001092594 | ACA | 8 | 83345 | 83368 | 24 | 66.67% | 0.00% | 0.00% | 33.33% | 85109861 |
| 57. | NW_001092594 | CAA | 4 | 83397 | 83408 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85109861 |
| 58. | NW_001092594 | CAG | 9 | 83409 | 83435 | 27 | 33.33% | 0.00% | 33.33% | 33.33% | 85109861 |
| 59. | NW_001092594 | CAG | 4 | 83467 | 83480 | 14 | 33.33% | 0.00% | 33.33% | 33.33% | 85109861 |
| 60. | NW_001092594 | GCC | 4 | 83504 | 83515 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85109861 |
| 61. | NW_001092594 | GCA | 5 | 84629 | 84643 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85109861 |
| 62. | NW_001092594 | CAG | 7 | 84648 | 84668 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | 85109861 |
| 63. | NW_001092594 | CAG | 4 | 85074 | 85085 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109861 |
| 64. | NW_001092594 | GCA | 4 | 85106 | 85117 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109861 |
| 65. | NW_001092594 | CAC | 4 | 86523 | 86534 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 66. | NW_001092594 | GCC | 5 | 86833 | 86847 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85109863 |
| 67. | NW_001092594 | GAG | 4 | 87676 | 87687 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109863 |
| 68. | NW_001092594 | AGG | 7 | 87773 | 87793 | 21 | 33.33% | 0.00% | 66.67% | 0.00% | 85109863 |
| 69. | NW_001092594 | GGA | 4 | 87909 | 87920 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109863 |
| 70. | NW_001092594 | AGG | 4 | 88013 | 88024 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109863 |
| 71. | NW_001092594 | GGA | 4 | 88167 | 88178 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85109863 |
| 72. | NW_001092594 | CAT | 4 | 89401 | 89412 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85109865 |
| 73. | NW_001092594 | TGG | 4 | 89536 | 89547 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109865 |
| 74. | NW_001092594 | CAG | 4 | 90192 | 90203 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85109865 |
| 75. | NW_001092594 | GAT | 4 | 92319 | 92330 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 76. | NW_001092594 | AGG | 4 | 97354 | 97364 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85109867 |
| 77. | NW_001092594 | GAG | 6 | 97461 | 97478 | 18 | 33.33% | 0.00% | 66.67% | 0.00% | 85109867 |
| 78. | NW_001092594 | TAC | 4 | 101225 | 101235 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85109869 |
| 79. | NW_001092594 | GCT | 4 | 105432 | 105443 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109871 |
| 80. | NW_001092594 | CGC | 4 | 107057 | 107068 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85109871 |
| 81. | NW_001092594 | GTC | 4 | 107731 | 107742 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109871 |
| 82. | NW_001092594 | TAC | 4 | 108665 | 108676 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 83. | NW_001092594 | GAG | 4 | 110020 | 110034 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 84. | NW_001092594 | GCT | 5 | 113555 | 113569 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85109873 |
| 85. | NW_001092594 | GCC | 4 | 113573 | 113584 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85109873 |
| 86. | NW_001092594 | CAC | 4 | 113641 | 113651 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85109873 |
| 87. | NW_001092594 | AGC | 4 | 114035 | 114045 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85109873 |
| 88. | NW_001092594 | GTT | 5 | 115783 | 115797 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85109875 |
| 89. | NW_001092594 | TCC | 4 | 117071 | 117082 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85109875 |
| 90. | NW_001092594 | GTC | 4 | 118967 | 118978 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109875 |
| 91. | NW_001092594 | GTC | 4 | 118988 | 118998 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85109875 |
| 92. | NW_001092594 | TCT | 4 | 119187 | 119198 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85109875 |
| 93. | NW_001092594 | AGA | 4 | 120426 | 120437 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 94. | NW_001092594 | CCA | 4 | 120601 | 120612 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109877 |
| 95. | NW_001092594 | CCG | 4 | 121936 | 121947 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85109877 |
| 96. | NW_001092594 | AAG | 4 | 122649 | 122660 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85109877 |
| 97. | NW_001092594 | AAC | 4 | 123270 | 123281 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 98. | NW_001092594 | ATC | 4 | 123380 | 123391 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 99. | NW_001092594 | AGA | 5 | 123596 | 123610 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 100. | NW_001092594 | ACA | 4 | 123643 | 123654 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 101. | NW_001092594 | TGG | 4 | 123900 | 123911 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85109879 |
| 102. | NW_001092594 | GCC | 6 | 124037 | 124053 | 17 | 0.00% | 0.00% | 33.33% | 66.67% | 85109879 |
| 103. | NW_001092594 | TGT | 4 | 124232 | 124243 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85109879 |
| 104. | NW_001092594 | CTG | 4 | 126232 | 126243 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109879 |
| 105. | NW_001092594 | GCT | 4 | 126618 | 126629 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85109879 |
| 106. | NW_001092594 | GGA | 5 | 127880 | 127894 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 107. | NW_001092594 | ACG | 7 | 128224 | 128244 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 108. | NW_001092594 | CCA | 4 | 128552 | 128563 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85109881 |
| 109. | NW_001092594 | CAA | 7 | 129077 | 129100 | 24 | 66.67% | 0.00% | 0.00% | 33.33% | 85109881 |
| 110. | NW_001092594 | TCG | 4 | 129579 | 129590 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 111. | NW_001092594 | CCA | 4 | 129766 | 129777 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |