List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092549 | ATT | 4 | 203 | 214 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092549 | TTA | 4 | 1238 | 1248 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092549 | ACG | 4 | 3609 | 3620 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 4. | NW_001092549 | TCG | 11 | 3768 | 3801 | 34 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 5. | NW_001092549 | TGT | 4 | 3949 | 3961 | 13 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 6. | NW_001092549 | CCA | 4 | 5775 | 5786 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107895 |
| 7. | NW_001092549 | CCA | 4 | 6011 | 6022 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107895 |
| 8. | NW_001092549 | GAA | 4 | 7345 | 7355 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 9. | NW_001092549 | TGC | 4 | 9715 | 9726 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 10. | NW_001092549 | CTC | 4 | 12266 | 12277 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 11. | NW_001092549 | ATC | 4 | 13260 | 13271 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85107903 |
| 12. | NW_001092549 | GGT | 4 | 15223 | 15234 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85107903 |
| 13. | NW_001092549 | CCA | 4 | 17270 | 17281 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107903 |
| 14. | NW_001092549 | GAA | 4 | 19251 | 19262 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 15. | NW_001092549 | GTC | 4 | 19426 | 19437 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 16. | NW_001092549 | GCT | 5 | 23572 | 23586 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85107908 |
| 17. | NW_001092549 | GCT | 4 | 23599 | 23610 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85107908 |
| 18. | NW_001092549 | GGC | 5 | 24223 | 24237 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85107908 |
| 19. | NW_001092549 | CCA | 4 | 27305 | 27316 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107908 |
| 20. | NW_001092549 | TGC | 4 | 27969 | 27980 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85107908 |
| 21. | NW_001092549 | AGA | 4 | 28952 | 28962 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85107908 |
| 22. | NW_001092549 | CTG | 4 | 38090 | 38101 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85107924 |
| 23. | NW_001092549 | TGT | 8 | 39055 | 39078 | 24 | 0.00% | 66.67% | 33.33% | 0.00% | 85107924 |
| 24. | NW_001092549 | TGC | 4 | 43309 | 43320 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 25. | NW_001092549 | CAG | 5 | 44826 | 44841 | 16 | 33.33% | 0.00% | 33.33% | 33.33% | 85107928 |
| 26. | NW_001092549 | GAA | 4 | 45230 | 45241 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85107928 |
| 27. | NW_001092549 | GGT | 4 | 45636 | 45647 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85107928 |
| 28. | NW_001092549 | GCT | 4 | 46769 | 46780 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85107928 |
| 29. | NW_001092549 | GTT | 4 | 47375 | 47386 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85107928 |
| 30. | NW_001092549 | CCA | 4 | 50395 | 50405 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 31. | NW_001092549 | GTC | 4 | 54027 | 54038 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85107932 |
| 32. | NW_001092549 | CGA | 4 | 55773 | 55783 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 33. | NW_001092549 | GCC | 4 | 57308 | 57319 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 34. | NW_001092549 | GAT | 4 | 57641 | 57651 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85107935 |
| 35. | NW_001092549 | GTG | 4 | 57708 | 57718 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85107935 |
| 36. | NW_001092549 | TGC | 9 | 57723 | 57749 | 27 | 0.00% | 33.33% | 33.33% | 33.33% | 85107935 |
| 37. | NW_001092549 | ATA | 4 | 63055 | 63065 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 38. | NW_001092549 | AAT | 5 | 63583 | 63597 | 15 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 39. | NW_001092549 | ATA | 4 | 64208 | 64219 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 40. | NW_001092549 | GTG | 5 | 64679 | 64692 | 14 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 41. | NW_001092549 | CAG | 4 | 65474 | 65486 | 13 | 33.33% | 0.00% | 33.33% | 33.33% | 85107943 |
| 42. | NW_001092549 | ATC | 4 | 67380 | 67391 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 43. | NW_001092549 | CAT | 4 | 70161 | 70171 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 44. | NW_001092549 | GCG | 4 | 71768 | 71779 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85107950 |
| 45. | NW_001092549 | GAG | 5 | 73207 | 73221 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85107950 |
| 46. | NW_001092549 | AGA | 4 | 74426 | 74437 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 47. | NW_001092549 | CAT | 4 | 75490 | 75501 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85107954 |
| 48. | NW_001092549 | TCC | 6 | 76883 | 76900 | 18 | 0.00% | 33.33% | 0.00% | 66.67% | 85107958 |
| 49. | NW_001092549 | CAG | 4 | 76914 | 76925 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85107958 |
| 50. | NW_001092549 | GAG | 7 | 77324 | 77344 | 21 | 33.33% | 0.00% | 66.67% | 0.00% | 85107958 |
| 51. | NW_001092549 | CTT | 5 | 79718 | 79732 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85107962 |
| 52. | NW_001092549 | ATC | 4 | 82301 | 82311 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85107966 |
| 53. | NW_001092549 | CAT | 4 | 85956 | 85966 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 54. | NW_001092549 | GTT | 4 | 86016 | 86027 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 55. | NW_001092549 | CGA | 4 | 86562 | 86573 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85107974 |
| 56. | NW_001092549 | TAC | 4 | 86593 | 86604 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 57. | NW_001092549 | CTC | 4 | 87768 | 87779 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 58. | NW_001092549 | CTT | 4 | 88431 | 88442 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 59. | NW_001092549 | CAA | 4 | 91269 | 91280 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85107978 |
| 60. | NW_001092549 | ACA | 4 | 92088 | 92099 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85107978 |
| 61. | NW_001092549 | TTG | 4 | 92650 | 92660 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 62. | NW_001092549 | AGG | 4 | 94402 | 94412 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85107982 |
| 63. | NW_001092549 | GAA | 7 | 95592 | 95612 | 21 | 66.67% | 0.00% | 33.33% | 0.00% | 85107986 |
| 64. | NW_001092549 | TCT | 14 | 95829 | 95871 | 43 | 0.00% | 66.67% | 0.00% | 33.33% | 85107986 |
| 65. | NW_001092549 | GGA | 4 | 96206 | 96216 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85107986 |
| 66. | NW_001092549 | AGG | 12 | 96313 | 96348 | 36 | 33.33% | 0.00% | 66.67% | 0.00% | 85107986 |
| 67. | NW_001092549 | CAT | 4 | 96813 | 96824 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85107986 |
| 68. | NW_001092549 | TCC | 4 | 96824 | 96835 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85107986 |
| 69. | NW_001092549 | CAC | 4 | 97041 | 97051 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85107986 |
| 70. | NW_001092549 | AGA | 4 | 97220 | 97231 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85107986 |
| 71. | NW_001092549 | GGC | 4 | 100382 | 100393 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85107990 |
| 72. | NW_001092549 | CAC | 4 | 100474 | 100485 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85107990 |
| 73. | NW_001092549 | GAG | 4 | 100760 | 100770 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85107990 |
| 74. | NW_001092549 | GCG | 4 | 100877 | 100888 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85107990 |
| 75. | NW_001092549 | GAT | 5 | 100949 | 100963 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85107990 |
| 76. | NW_001092549 | GAA | 4 | 101540 | 101551 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85107993 |
| 77. | NW_001092549 | ACG | 4 | 102555 | 102566 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85107993 |
| 78. | NW_001092549 | CGA | 4 | 105490 | 105501 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85107998 |
| 79. | NW_001092549 | GGA | 4 | 105665 | 105675 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85107998 |
| 80. | NW_001092549 | GCA | 4 | 105757 | 105768 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85107998 |
| 81. | NW_001092549 | TCA | 4 | 106085 | 106095 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 82. | NW_001092549 | CTC | 4 | 106489 | 106500 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85108002 |
| 83. | NW_001092549 | CGC | 4 | 107189 | 107200 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85108002 |
| 84. | NW_001092549 | CGT | 4 | 108788 | 108799 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 85. | NW_001092549 | TTA | 4 | 112511 | 112521 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 86. | NW_001092549 | GAA | 4 | 114799 | 114809 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 87. | NW_001092549 | AAT | 4 | 117565 | 117576 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 88. | NW_001092549 | AGA | 4 | 121246 | 121257 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 89. | NW_001092549 | CTT | 8 | 122643 | 122666 | 24 | 0.00% | 66.67% | 0.00% | 33.33% | 85108017 |
| 90. | NW_001092549 | CTT | 4 | 122715 | 122726 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85108017 |
| 91. | NW_001092549 | CCT | 5 | 122724 | 122738 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85108017 |
| 92. | NW_001092549 | TCG | 5 | 123198 | 123212 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85108017 |
| 93. | NW_001092549 | CGG | 4 | 125865 | 125876 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85108021 |
| 94. | NW_001092549 | TCT | 6 | 130213 | 130231 | 19 | 0.00% | 66.67% | 0.00% | 33.33% | 85108025 |
| 95. | NW_001092549 | TCC | 4 | 130237 | 130248 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85108025 |
| 96. | NW_001092549 | GTG | 4 | 130537 | 130548 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85108025 |
| 97. | NW_001092549 | GTC | 4 | 133144 | 133154 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 98. | NW_001092549 | TGA | 4 | 133502 | 133512 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 99. | NW_001092549 | CTT | 4 | 134282 | 134293 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 100. | NW_001092549 | CCA | 8 | 137092 | 137115 | 24 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 101. | NW_001092549 | CAA | 5 | 137430 | 137444 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 102. | NW_001092549 | ATC | 4 | 138723 | 138734 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 103. | NW_001092549 | CAA | 4 | 139347 | 139358 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85108032 |
| 104. | NW_001092549 | AGC | 4 | 144279 | 144289 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 105. | NW_001092549 | CTC | 10 | 144366 | 144394 | 29 | 0.00% | 33.33% | 0.00% | 66.67% | 85108040 |
| 106. | NW_001092549 | CGC | 6 | 144515 | 144532 | 18 | 0.00% | 0.00% | 33.33% | 66.67% | 85108040 |
| 107. | NW_001092549 | ACC | 4 | 145016 | 145026 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85108040 |
| 108. | NW_001092549 | CAC | 4 | 148512 | 148522 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85108044 |
| 109. | NW_001092549 | TGA | 4 | 149672 | 149684 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | 85108044 |
| 110. | NW_001092549 | TAT | 4 | 150671 | 150683 | 13 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |