List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092466 | CTT | 5 | 233 | 250 | 18 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 2. | NW_001092466 | CAT | 4 | 1101 | 1112 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 3. | NW_001092466 | CCA | 4 | 2117 | 2128 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85099419 |
| 4. | NW_001092466 | CTC | 4 | 3380 | 3391 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85099419 |
| 5. | NW_001092466 | AGC | 4 | 4029 | 4040 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85099419 |
| 6. | NW_001092466 | GGA | 4 | 4380 | 4391 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85099419 |
| 7. | NW_001092466 | GCT | 5 | 4695 | 4709 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 8. | NW_001092466 | GGT | 11 | 4931 | 4962 | 32 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 9. | NW_001092466 | GTT | 4 | 4972 | 4983 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 10. | NW_001092466 | TGT | 5 | 5293 | 5307 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 11. | NW_001092466 | TGC | 7 | 5305 | 5325 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 12. | NW_001092466 | TGT | 5 | 5320 | 5334 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 13. | NW_001092466 | CGC | 6 | 6667 | 6684 | 18 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 14. | NW_001092466 | CGA | 4 | 9829 | 9841 | 13 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 15. | NW_001092466 | CAG | 7 | 9960 | 9979 | 20 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 16. | NW_001092466 | GAT | 4 | 10023 | 10033 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 17. | NW_001092466 | GTA | 4 | 11952 | 11964 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 18. | NW_001092466 | TAG | 4 | 12089 | 12099 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 19. | NW_001092466 | CCG | 4 | 12739 | 12749 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85099423 |
| 20. | NW_001092466 | GTC | 4 | 14335 | 14345 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85099423 |
| 21. | NW_001092466 | GTC | 4 | 19213 | 19224 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 22. | NW_001092466 | ATC | 4 | 20239 | 20249 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85099431 |
| 23. | NW_001092466 | TGG | 5 | 22973 | 22987 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 24. | NW_001092466 | AGA | 4 | 23254 | 23265 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 25. | NW_001092466 | CTA | 4 | 24513 | 24523 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 26. | NW_001092466 | CAA | 9 | 26747 | 26773 | 27 | 66.67% | 0.00% | 0.00% | 33.33% | 85099435 |
| 27. | NW_001092466 | GCA | 4 | 27089 | 27100 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85099435 |
| 28. | NW_001092466 | TGT | 4 | 27694 | 27705 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 29. | NW_001092466 | GAT | 4 | 31793 | 31804 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85099439 |
| 30. | NW_001092466 | ACG | 4 | 32409 | 32420 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85099439 |
| 31. | NW_001092466 | ACC | 7 | 32786 | 32806 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | 85099439 |
| 32. | NW_001092466 | ATA | 4 | 33669 | 33680 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 33. | NW_001092466 | GGA | 5 | 34888 | 34902 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85099443 |
| 34. | NW_001092466 | GTT | 6 | 35617 | 35634 | 18 | 0.00% | 66.67% | 33.33% | 0.00% | 85099443 |
| 35. | NW_001092466 | CAA | 4 | 36477 | 36487 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 36. | NW_001092466 | GCC | 4 | 36852 | 36866 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 37. | NW_001092466 | GCG | 5 | 37300 | 37314 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85099447 |
| 38. | NW_001092466 | GAC | 4 | 38191 | 38202 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85099447 |
| 39. | NW_001092466 | ACG | 4 | 38228 | 38239 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85099447 |
| 40. | NW_001092466 | GGA | 5 | 38247 | 38261 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85099447 |
| 41. | NW_001092466 | TCC | 4 | 39643 | 39654 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85099451 |
| 42. | NW_001092466 | CCG | 4 | 39653 | 39664 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85099451 |
| 43. | NW_001092466 | CCA | 4 | 39668 | 39679 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85099451 |
| 44. | NW_001092466 | GCC | 4 | 40634 | 40645 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85099451 |
| 45. | NW_001092466 | CTC | 4 | 40647 | 40658 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85099451 |
| 46. | NW_001092466 | AGC | 4 | 40875 | 40886 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85099451 |
| 47. | NW_001092466 | TGT | 4 | 41030 | 41041 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 48. | NW_001092466 | GAG | 4 | 42119 | 42130 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 49. | NW_001092466 | AGA | 4 | 42344 | 42356 | 13 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 50. | NW_001092466 | TTC | 4 | 43187 | 43199 | 13 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 51. | NW_001092466 | GTC | 5 | 48115 | 48128 | 14 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 52. | NW_001092466 | TGT | 4 | 48205 | 48216 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 53. | NW_001092466 | TCA | 4 | 48549 | 48560 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85099463 |
| 54. | NW_001092466 | CAC | 7 | 48594 | 48614 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | 85099463 |
| 55. | NW_001092466 | ACC | 8 | 48704 | 48727 | 24 | 33.33% | 0.00% | 0.00% | 66.67% | 85099463 |
| 56. | NW_001092466 | CGC | 4 | 48764 | 48776 | 13 | 0.00% | 0.00% | 33.33% | 66.67% | 85099463 |
| 57. | NW_001092466 | ATG | 4 | 49398 | 49409 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85099463 |
| 58. | NW_001092466 | GTG | 4 | 49496 | 49507 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85099463 |
| 59. | NW_001092466 | GGC | 4 | 50053 | 50064 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 60. | NW_001092466 | GCA | 4 | 51442 | 51453 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |