List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092429 | ACT | 4 | 50 | 61 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 2. | NW_001092429 | TAA | 4 | 738 | 749 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092429 | ACC | 5 | 2136 | 2149 | 14 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 4. | NW_001092429 | CTC | 4 | 3017 | 3028 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85096664 |
| 5. | NW_001092429 | TGG | 4 | 4173 | 4184 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85096664 |
| 6. | NW_001092429 | TGC | 4 | 5008 | 5019 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 7. | NW_001092429 | GAT | 4 | 5391 | 5403 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 8. | NW_001092429 | TAC | 4 | 6665 | 6675 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 9. | NW_001092429 | TAA | 4 | 7946 | 7956 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | 85096667 |
| 10. | NW_001092429 | TAA | 4 | 8114 | 8125 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 11. | NW_001092429 | ATA | 9 | 8155 | 8184 | 30 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 12. | NW_001092429 | ATA | 4 | 8540 | 8551 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 13. | NW_001092429 | TAG | 4 | 9946 | 9957 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 14. | NW_001092429 | TTC | 4 | 11977 | 11988 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 15. | NW_001092429 | CCA | 4 | 12428 | 12439 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 16. | NW_001092429 | TGA | 4 | 14315 | 14326 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85096671 |
| 17. | NW_001092429 | TTC | 4 | 14676 | 14687 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85096671 |
| 18. | NW_001092429 | CTC | 4 | 14805 | 14815 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85096671 |
| 19. | NW_001092429 | GGA | 4 | 18887 | 18898 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85096671 |
| 20. | NW_001092429 | TGA | 4 | 18970 | 18981 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85096671 |
| 21. | NW_001092429 | TCG | 4 | 23653 | 23664 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85096671 |
| 22. | NW_001092429 | AGC | 4 | 27146 | 27157 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85096671 |
| 23. | NW_001092429 | GTG | 4 | 27654 | 27666 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | 85096671 |
| 24. | NW_001092429 | AGA | 5 | 28238 | 28251 | 14 | 66.67% | 0.00% | 33.33% | 0.00% | 85096675 |
| 25. | NW_001092429 | TGG | 4 | 28977 | 28988 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85096675 |
| 26. | NW_001092429 | GCA | 4 | 29829 | 29839 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 27. | NW_001092429 | GGC | 4 | 30593 | 30604 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 28. | NW_001092429 | GAA | 6 | 32337 | 32356 | 20 | 66.67% | 0.00% | 33.33% | 0.00% | 85096680 |
| 29. | NW_001092429 | TCA | 4 | 33330 | 33340 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 30. | NW_001092429 | GAG | 5 | 37560 | 37574 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85096689 |
| 31. | NW_001092429 | AGG | 4 | 37624 | 37635 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85096689 |
| 32. | NW_001092429 | CAG | 4 | 37814 | 37825 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85096689 |
| 33. | NW_001092429 | CAG | 4 | 38060 | 38071 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85096689 |
| 34. | NW_001092429 | AAG | 4 | 38136 | 38147 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85096689 |
| 35. | NW_001092429 | TTG | 4 | 38752 | 38763 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 36. | NW_001092429 | TGC | 4 | 39646 | 39657 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 37. | NW_001092429 | TTC | 4 | 40908 | 40920 | 13 | 0.00% | 66.67% | 0.00% | 33.33% | 85096694 |
| 38. | NW_001092429 | GCC | 4 | 40932 | 40943 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85096694 |
| 39. | NW_001092429 | GCC | 4 | 41005 | 41016 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85096694 |
| 40. | NW_001092429 | GAG | 4 | 42832 | 42842 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85096698 |
| 41. | NW_001092429 | TGG | 7 | 43927 | 43947 | 21 | 0.00% | 33.33% | 66.67% | 0.00% | 85096698 |
| 42. | NW_001092429 | TGT | 4 | 45392 | 45403 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 43. | NW_001092429 | TCC | 4 | 46511 | 46521 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85096702 |
| 44. | NW_001092429 | ACG | 4 | 52148 | 52158 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 45. | NW_001092429 | ATC | 4 | 54116 | 54127 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85096714 |
| 46. | NW_001092429 | TCT | 4 | 55253 | 55265 | 13 | 0.00% | 66.67% | 0.00% | 33.33% | 85096714 |
| 47. | NW_001092429 | CTC | 5 | 57928 | 57942 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85096718 |
| 48. | NW_001092429 | CCT | 4 | 59676 | 59687 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85096723 |
| 49. | NW_001092429 | CTC | 4 | 59776 | 59786 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85096723 |
| 50. | NW_001092429 | CTT | 4 | 60316 | 60326 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85096723 |
| 51. | NW_001092429 | GCG | 4 | 61325 | 61335 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85096723 |
| 52. | NW_001092429 | TAC | 4 | 63969 | 63980 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 53. | NW_001092429 | AAT | 4 | 69222 | 69233 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 54. | NW_001092429 | GGA | 4 | 69477 | 69488 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85096736 |
| 55. | NW_001092429 | GCA | 4 | 71660 | 71671 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 56. | NW_001092429 | TGA | 4 | 73036 | 73047 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85096740 |
| 57. | NW_001092429 | GCG | 6 | 73795 | 73812 | 18 | 0.00% | 0.00% | 66.67% | 33.33% | 85096740 |
| 58. | NW_001092429 | GAC | 4 | 75059 | 75070 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85096740 |
| 59. | NW_001092429 | CAT | 4 | 78702 | 78712 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 60. | NW_001092429 | CAA | 4 | 78814 | 78825 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 61. | NW_001092429 | TGA | 4 | 79754 | 79766 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 62. | NW_001092429 | AGA | 4 | 80178 | 80189 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85096749 |
| 63. | NW_001092429 | TCA | 4 | 80561 | 80572 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85096749 |
| 64. | NW_001092429 | CCT | 4 | 84489 | 84500 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 65. | NW_001092429 | TGC | 4 | 85119 | 85130 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85096753 |
| 66. | NW_001092429 | TGG | 4 | 85662 | 85673 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85096753 |
| 67. | NW_001092429 | TCC | 4 | 86725 | 86736 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 68. | NW_001092429 | GCT | 4 | 88923 | 88933 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85096757 |
| 69. | NW_001092429 | TAG | 4 | 89533 | 89544 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85096757 |
| 70. | NW_001092429 | AGG | 4 | 91405 | 91415 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 71. | NW_001092429 | TCC | 4 | 94198 | 94209 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85096762 |
| 72. | NW_001092429 | GAT | 4 | 97233 | 97244 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 73. | NW_001092429 | CCT | 4 | 100436 | 100447 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85096766 |
| 74. | NW_001092429 | CTC | 4 | 100470 | 100481 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85096766 |