List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092425 | CAA | 5 | 631 | 645 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 2. | NW_001092425 | TCG | 4 | 894 | 905 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 3. | NW_001092425 | CAC | 5 | 2192 | 2206 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85096210 |
| 4. | NW_001092425 | CAA | 4 | 2201 | 2212 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85096210 |
| 5. | NW_001092425 | GAA | 4 | 3813 | 3823 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85096210 |
| 6. | NW_001092425 | TGA | 4 | 4388 | 4399 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85096210 |
| 7. | NW_001092425 | GAC | 4 | 5030 | 5041 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85096210 |
| 8. | NW_001092425 | GAG | 4 | 6268 | 6278 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 9. | NW_001092425 | CAC | 4 | 7733 | 7744 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85096214 |
| 10. | NW_001092425 | TGG | 4 | 7982 | 7993 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85096214 |
| 11. | NW_001092425 | TGA | 8 | 9864 | 9887 | 24 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 12. | NW_001092425 | GTG | 5 | 10086 | 10101 | 16 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 13. | NW_001092425 | TGA | 4 | 11494 | 11505 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 14. | NW_001092425 | TGG | 7 | 12603 | 12622 | 20 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 15. | NW_001092425 | CAC | 7 | 15386 | 15406 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 16. | NW_001092425 | TCG | 4 | 15476 | 15487 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 17. | NW_001092425 | AGA | 12 | 15506 | 15542 | 37 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 18. | NW_001092425 | GCA | 4 | 17646 | 17656 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 19. | NW_001092425 | GTG | 4 | 19995 | 20006 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85096226 |
| 20. | NW_001092425 | AGG | 4 | 20132 | 20143 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85096226 |
| 21. | NW_001092425 | CTG | 4 | 20366 | 20376 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 22. | NW_001092425 | TTG | 4 | 22058 | 22069 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 23. | NW_001092425 | GTC | 4 | 22638 | 22649 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85096230 |
| 24. | NW_001092425 | CTC | 4 | 24387 | 24398 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85096230 |
| 25. | NW_001092425 | AGG | 4 | 24656 | 24667 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85096230 |
| 26. | NW_001092425 | GCT | 9 | 24676 | 24702 | 27 | 0.00% | 33.33% | 33.33% | 33.33% | 85096230 |
| 27. | NW_001092425 | GGC | 4 | 28341 | 28352 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85096234 |
| 28. | NW_001092425 | GGT | 4 | 28350 | 28361 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85096234 |
| 29. | NW_001092425 | TGG | 14 | 28388 | 28429 | 42 | 0.00% | 33.33% | 66.67% | 0.00% | 85096234 |
| 30. | NW_001092425 | AGG | 4 | 28456 | 28467 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85096234 |
| 31. | NW_001092425 | CAG | 13 | 29138 | 29176 | 39 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 32. | NW_001092425 | TGC | 5 | 29935 | 29949 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85096239 |
| 33. | NW_001092425 | GGT | 7 | 30150 | 30171 | 22 | 0.00% | 33.33% | 66.67% | 0.00% | 85096239 |
| 34. | NW_001092425 | TGT | 4 | 30685 | 30695 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | 85096239 |
| 35. | NW_001092425 | ACC | 4 | 35325 | 35336 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85096247 |
| 36. | NW_001092425 | AAG | 4 | 35790 | 35801 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85096247 |
| 37. | NW_001092425 | TCC | 5 | 35843 | 35857 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85096247 |
| 38. | NW_001092425 | GAG | 4 | 36226 | 36238 | 13 | 33.33% | 0.00% | 66.67% | 0.00% | 85096247 |
| 39. | NW_001092425 | CTC | 4 | 37211 | 37222 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 40. | NW_001092425 | TCA | 4 | 37549 | 37560 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 41. | NW_001092425 | TCC | 7 | 37691 | 37711 | 21 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 42. | NW_001092425 | CTT | 8 | 38950 | 38973 | 24 | 0.00% | 66.67% | 0.00% | 33.33% | 85096251 |
| 43. | NW_001092425 | GAG | 5 | 39110 | 39124 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85096251 |
| 44. | NW_001092425 | ACC | 4 | 39412 | 39423 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85096251 |
| 45. | NW_001092425 | CTT | 4 | 40064 | 40075 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85096251 |
| 46. | NW_001092425 | CAA | 4 | 41517 | 41529 | 13 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 47. | NW_001092425 | GCA | 4 | 42368 | 42378 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85096255 |
| 48. | NW_001092425 | ACC | 4 | 45548 | 45558 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85096259 |
| 49. | NW_001092425 | CTT | 4 | 45949 | 45960 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85096259 |
| 50. | NW_001092425 | CAC | 4 | 49930 | 49941 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 51. | NW_001092425 | CCA | 4 | 50453 | 50464 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85096272 |
| 52. | NW_001092425 | GAG | 4 | 50703 | 50714 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85096272 |
| 53. | NW_001092425 | GAC | 4 | 52974 | 52984 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85096272 |
| 54. | NW_001092425 | AGC | 5 | 53499 | 53514 | 16 | 33.33% | 0.00% | 33.33% | 33.33% | 85096272 |
| 55. | NW_001092425 | GCA | 4 | 55335 | 55346 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 56. | NW_001092425 | TGG | 4 | 55825 | 55837 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 57. | NW_001092425 | CGA | 4 | 57508 | 57519 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85096276 |
| 58. | NW_001092425 | CAG | 7 | 57953 | 57973 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | 85096276 |
| 59. | NW_001092425 | CAG | 5 | 58022 | 58036 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85096276 |
| 60. | NW_001092425 | CAA | 7 | 58093 | 58113 | 21 | 66.67% | 0.00% | 0.00% | 33.33% | 85096276 |
| 61. | NW_001092425 | CAG | 5 | 58298 | 58312 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85096276 |
| 62. | NW_001092425 | CAG | 4 | 58667 | 58678 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85096276 |
| 63. | NW_001092425 | GTT | 4 | 58959 | 58970 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 64. | NW_001092425 | CAT | 4 | 59830 | 59841 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |