List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092332 | GGT | 4 | 875 | 886 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 2. | NW_001092332 | AAC | 6 | 1877 | 1894 | 18 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 3. | NW_001092332 | CGC | 4 | 2842 | 2853 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85091312 |
| 4. | NW_001092332 | CTT | 4 | 3013 | 3024 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85091312 |
| 5. | NW_001092332 | GAC | 4 | 3248 | 3259 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85091312 |
| 6. | NW_001092332 | ACA | 4 | 3414 | 3425 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85091312 |
| 7. | NW_001092332 | ACT | 4 | 4601 | 4611 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 8. | NW_001092332 | CAC | 4 | 5364 | 5374 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 9. | NW_001092332 | CCG | 4 | 5509 | 5521 | 13 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 10. | NW_001092332 | CAA | 11 | 5704 | 5736 | 33 | 66.67% | 0.00% | 0.00% | 33.33% | 85091314 |
| 11. | NW_001092332 | AGC | 4 | 5932 | 5943 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85091314 |
| 12. | NW_001092332 | ACC | 8 | 6140 | 6163 | 24 | 33.33% | 0.00% | 0.00% | 66.67% | 85091314 |
| 13. | NW_001092332 | CAA | 5 | 6251 | 6265 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85091314 |
| 14. | NW_001092332 | GGT | 4 | 6818 | 6828 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | 85091314 |
| 15. | NW_001092332 | TCT | 5 | 8493 | 8507 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85091314 |
| 16. | NW_001092332 | AAG | 4 | 8650 | 8661 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85091314 |
| 17. | NW_001092332 | AGG | 4 | 8659 | 8670 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85091314 |
| 18. | NW_001092332 | TCC | 4 | 8751 | 8762 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85091314 |
| 19. | NW_001092332 | GGT | 6 | 8943 | 8960 | 18 | 0.00% | 33.33% | 66.67% | 0.00% | 85091314 |
| 20. | NW_001092332 | AGC | 9 | 9011 | 9037 | 27 | 33.33% | 0.00% | 33.33% | 33.33% | 85091314 |
| 21. | NW_001092332 | AGG | 4 | 9044 | 9055 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85091314 |
| 22. | NW_001092332 | CTT | 4 | 9977 | 9988 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85091316 |
| 23. | NW_001092332 | ACA | 6 | 11299 | 11315 | 17 | 66.67% | 0.00% | 0.00% | 33.33% | 85091316 |
| 24. | NW_001092332 | CAT | 4 | 11492 | 11503 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 25. | NW_001092332 | CAA | 4 | 11559 | 11571 | 13 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 26. | NW_001092332 | CAA | 7 | 11746 | 11766 | 21 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 27. | NW_001092332 | CTG | 4 | 11918 | 11929 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 28. | NW_001092332 | CCG | 5 | 12003 | 12017 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85091318 |
| 29. | NW_001092332 | TCG | 4 | 12848 | 12859 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091318 |
| 30. | NW_001092332 | CCT | 4 | 13319 | 13330 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85091318 |
| 31. | NW_001092332 | GTT | 4 | 14304 | 14315 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 32. | NW_001092332 | GGT | 4 | 14313 | 14323 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 33. | NW_001092332 | ACC | 4 | 15339 | 15349 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 34. | NW_001092332 | GTT | 4 | 15736 | 15746 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 35. | NW_001092332 | TCG | 5 | 16317 | 16331 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 36. | NW_001092332 | ATG | 11 | 20858 | 20890 | 33 | 33.33% | 33.33% | 33.33% | 0.00% | 85091320 |
| 37. | NW_001092332 | CTC | 4 | 22570 | 22581 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85091322 |
| 38. | NW_001092332 | TCA | 4 | 23376 | 23386 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 39. | NW_001092332 | TCA | 4 | 26081 | 26091 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 40. | NW_001092332 | CTT | 4 | 26698 | 26709 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 41. | NW_001092332 | CCA | 9 | 27089 | 27115 | 27 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 42. | NW_001092332 | ATG | 6 | 28111 | 28128 | 18 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 43. | NW_001092332 | ATG | 5 | 29093 | 29107 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 44. | NW_001092332 | GTG | 5 | 29704 | 29718 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85091326 |
| 45. | NW_001092332 | CAT | 4 | 30041 | 30051 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | 85091326 |
| 46. | NW_001092332 | TTC | 4 | 31374 | 31385 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 47. | NW_001092332 | ACA | 4 | 32392 | 32405 | 14 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 48. | NW_001092332 | ACA | 7 | 32487 | 32507 | 21 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 49. | NW_001092332 | CAC | 4 | 32870 | 32881 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85091328 |
| 50. | NW_001092332 | TCC | 14 | 32879 | 32919 | 41 | 0.00% | 33.33% | 0.00% | 66.67% | 85091328 |
| 51. | NW_001092332 | TGA | 4 | 32950 | 32963 | 14 | 33.33% | 33.33% | 33.33% | 0.00% | 85091328 |
| 52. | NW_001092332 | GCG | 4 | 34985 | 34997 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | 85091330 |
| 53. | NW_001092332 | CAA | 4 | 39569 | 39580 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85091332 |
| 54. | NW_001092332 | GCT | 5 | 39953 | 39966 | 14 | 0.00% | 33.33% | 33.33% | 33.33% | 85091332 |
| 55. | NW_001092332 | CAG | 15 | 43368 | 43411 | 44 | 33.33% | 0.00% | 33.33% | 33.33% | 85091334 |
| 56. | NW_001092332 | GAT | 4 | 45965 | 45976 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85091336 |
| 57. | NW_001092332 | CTT | 4 | 46017 | 46027 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85091336 |
| 58. | NW_001092332 | GTC | 5 | 46220 | 46234 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85091336 |
| 59. | NW_001092332 | CTT | 7 | 46257 | 46277 | 21 | 0.00% | 66.67% | 0.00% | 33.33% | 85091336 |
| 60. | NW_001092332 | GTT | 9 | 46356 | 46382 | 27 | 0.00% | 66.67% | 33.33% | 0.00% | 85091336 |
| 61. | NW_001092332 | ACC | 5 | 46492 | 46506 | 15 | 33.33% | 0.00% | 0.00% | 66.67% | 85091336 |
| 62. | NW_001092332 | TGC | 4 | 46981 | 46992 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091336 |
| 63. | NW_001092332 | TGA | 5 | 46990 | 47004 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85091336 |
| 64. | NW_001092332 | GTG | 11 | 49041 | 49073 | 33 | 0.00% | 33.33% | 66.67% | 0.00% | 85091336 |
| 65. | NW_001092332 | GCG | 4 | 49100 | 49111 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85091336 |
| 66. | NW_001092332 | AGT | 4 | 49138 | 49148 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85091336 |
| 67. | NW_001092332 | CTG | 4 | 49250 | 49261 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091336 |
| 68. | NW_001092332 | CTC | 5 | 51434 | 51448 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85091338 |
| 69. | NW_001092332 | CAG | 6 | 53423 | 53443 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 70. | NW_001092332 | TTG | 4 | 53578 | 53589 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 71. | NW_001092332 | TCC | 4 | 55482 | 55493 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85091340 |
| 72. | NW_001092332 | TCC | 4 | 56037 | 56048 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85091340 |
| 73. | NW_001092332 | CTC | 4 | 58836 | 58847 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85091340 |
| 74. | NW_001092332 | TCC | 4 | 59048 | 59059 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85091340 |
| 75. | NW_001092332 | TGC | 5 | 59464 | 59478 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 76. | NW_001092332 | CAA | 4 | 62107 | 62118 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 77. | NW_001092332 | GAC | 4 | 62482 | 62493 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85091342 |
| 78. | NW_001092332 | CTC | 6 | 63863 | 63883 | 21 | 0.00% | 33.33% | 0.00% | 66.67% | 85091342 |
| 79. | NW_001092332 | GCC | 5 | 63996 | 64010 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85091342 |
| 80. | NW_001092332 | TCG | 5 | 65009 | 65023 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85091344 |
| 81. | NW_001092332 | AGC | 7 | 65031 | 65050 | 20 | 33.33% | 0.00% | 33.33% | 33.33% | 85091344 |
| 82. | NW_001092332 | CAC | 4 | 67653 | 67664 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85091346 |
| 83. | NW_001092332 | TGA | 6 | 68142 | 68159 | 18 | 33.33% | 33.33% | 33.33% | 0.00% | 85091346 |
| 84. | NW_001092332 | GCG | 4 | 68491 | 68503 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | 85091346 |
| 85. | NW_001092332 | CGA | 7 | 69246 | 69266 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | 85091346 |
| 86. | NW_001092332 | ACA | 5 | 70079 | 70093 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85091346 |
| 87. | NW_001092332 | AGT | 4 | 70250 | 70261 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85091346 |
| 88. | NW_001092332 | TGC | 5 | 70347 | 70360 | 14 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 89. | NW_001092332 | ATA | 4 | 70748 | 70760 | 13 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 90. | NW_001092332 | TTG | 32 | 71386 | 71481 | 96 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 91. | NW_001092332 | TCT | 4 | 71615 | 71627 | 13 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 92. | NW_001092332 | TCT | 4 | 71816 | 71827 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 93. | NW_001092332 | AGA | 6 | 72413 | 72431 | 19 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 94. | NW_001092332 | TCG | 4 | 72911 | 72922 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091348 |
| 95. | NW_001092332 | GTC | 4 | 73563 | 73574 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091348 |
| 96. | NW_001092332 | GGT | 4 | 73581 | 73592 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85091348 |
| 97. | NW_001092332 | GCG | 4 | 73651 | 73661 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85091348 |
| 98. | NW_001092332 | GTA | 4 | 77110 | 77121 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 99. | NW_001092332 | AGA | 4 | 78100 | 78111 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 100. | NW_001092332 | GAA | 5 | 79282 | 79296 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 101. | NW_001092332 | GGA | 4 | 80289 | 80299 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85091350 |
| 102. | NW_001092332 | CAG | 8 | 80359 | 80382 | 24 | 33.33% | 0.00% | 33.33% | 33.33% | 85091350 |
| 103. | NW_001092332 | AGC | 5 | 80408 | 80422 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85091350 |
| 104. | NW_001092332 | AGC | 5 | 80456 | 80470 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85091350 |
| 105. | NW_001092332 | GCA | 4 | 80475 | 80486 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85091350 |
| 106. | NW_001092332 | AGC | 5 | 80861 | 80875 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85091350 |
| 107. | NW_001092332 | GCA | 5 | 81087 | 81101 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85091350 |
| 108. | NW_001092332 | GTA | 9 | 81096 | 81122 | 27 | 33.33% | 33.33% | 33.33% | 0.00% | 85091350 |
| 109. | NW_001092332 | AGT | 4 | 81254 | 81265 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85091350 |
| 110. | NW_001092332 | TGC | 13 | 81433 | 81471 | 39 | 0.00% | 33.33% | 33.33% | 33.33% | 85091350 |
| 111. | NW_001092332 | AGG | 4 | 81548 | 81559 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85091350 |
| 112. | NW_001092332 | GCA | 4 | 81597 | 81608 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85091350 |