List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092331 | GAA | 4 | 66 | 77 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 2. | NW_001092331 | TAA | 4 | 1972 | 1983 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092331 | TTA | 4 | 2122 | 2133 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 4. | NW_001092331 | CAA | 4 | 4896 | 4907 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 5. | NW_001092331 | GAA | 4 | 8133 | 8144 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 6. | NW_001092331 | CAG | 4 | 10215 | 10225 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85091277 |
| 7. | NW_001092331 | ATA | 4 | 11473 | 11483 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 8. | NW_001092331 | CAA | 4 | 12793 | 12804 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 9. | NW_001092331 | GTG | 4 | 13043 | 13054 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 10. | NW_001092331 | CGA | 4 | 13260 | 13271 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 11. | NW_001092331 | CAG | 5 | 16175 | 16189 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85091281 |
| 12. | NW_001092331 | CTG | 4 | 16190 | 16200 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85091281 |
| 13. | NW_001092331 | TCC | 9 | 16443 | 16469 | 27 | 0.00% | 33.33% | 0.00% | 66.67% | 85091281 |
| 14. | NW_001092331 | GAA | 4 | 16813 | 16824 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85091281 |
| 15. | NW_001092331 | GAA | 4 | 17046 | 17057 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85091281 |
| 16. | NW_001092331 | CGC | 4 | 17171 | 17182 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85091281 |
| 17. | NW_001092331 | GCT | 6 | 17374 | 17391 | 18 | 0.00% | 33.33% | 33.33% | 33.33% | 85091281 |
| 18. | NW_001092331 | GGC | 4 | 17395 | 17406 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85091281 |
| 19. | NW_001092331 | CTC | 4 | 17458 | 17468 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | 85091281 |
| 20. | NW_001092331 | CAC | 4 | 18174 | 18185 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85091281 |
| 21. | NW_001092331 | TGT | 4 | 18655 | 18666 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85091281 |
| 22. | NW_001092331 | CTG | 12 | 18918 | 18953 | 36 | 0.00% | 33.33% | 33.33% | 33.33% | 85091281 |
| 23. | NW_001092331 | GAA | 7 | 19278 | 19299 | 22 | 66.67% | 0.00% | 33.33% | 0.00% | 85091281 |
| 24. | NW_001092331 | TCA | 4 | 20626 | 20637 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 25. | NW_001092331 | GCA | 4 | 23726 | 23736 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 26. | NW_001092331 | AGA | 4 | 23795 | 23805 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 27. | NW_001092331 | CAC | 4 | 24288 | 24299 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85091285 |
| 28. | NW_001092331 | TCG | 4 | 24981 | 24991 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85091285 |
| 29. | NW_001092331 | TAC | 4 | 32500 | 32510 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 30. | NW_001092331 | GGA | 4 | 32612 | 32622 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 31. | NW_001092331 | CAC | 9 | 33203 | 33229 | 27 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 32. | NW_001092331 | TGG | 14 | 35987 | 36027 | 41 | 0.00% | 33.33% | 66.67% | 0.00% | 85091287 |
| 33. | NW_001092331 | TAA | 4 | 37106 | 37117 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 34. | NW_001092331 | GAT | 4 | 37556 | 37566 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 35. | NW_001092331 | TGT | 5 | 40145 | 40159 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85091289 |
| 36. | NW_001092331 | TGG | 6 | 40619 | 40636 | 18 | 0.00% | 33.33% | 66.67% | 0.00% | 85091289 |
| 37. | NW_001092331 | TGA | 17 | 40761 | 40812 | 52 | 33.33% | 33.33% | 33.33% | 0.00% | 85091289 |
| 38. | NW_001092331 | TTG | 4 | 40866 | 40877 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85091289 |
| 39. | NW_001092331 | ACA | 5 | 43300 | 43314 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 40. | NW_001092331 | CAC | 4 | 43488 | 43499 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85091291 |
| 41. | NW_001092331 | CGA | 7 | 43548 | 43568 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | 85091291 |
| 42. | NW_001092331 | TCC | 5 | 43663 | 43676 | 14 | 0.00% | 33.33% | 0.00% | 66.67% | 85091291 |
| 43. | NW_001092331 | TGA | 4 | 44238 | 44249 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85091291 |
| 44. | NW_001092331 | GGA | 4 | 44385 | 44395 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85091291 |
| 45. | NW_001092331 | CTT | 5 | 45583 | 45597 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | 85091293 |
| 46. | NW_001092331 | TTG | 4 | 45748 | 45758 | 11 | 0.00% | 66.67% | 33.33% | 0.00% | 85091293 |
| 47. | NW_001092331 | GGC | 4 | 45839 | 45850 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 48. | NW_001092331 | CCG | 4 | 46571 | 46581 | 11 | 0.00% | 0.00% | 33.33% | 66.67% | 85091295 |
| 49. | NW_001092331 | CGC | 4 | 46703 | 46714 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85091295 |
| 50. | NW_001092331 | CCA | 4 | 50060 | 50071 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 51. | NW_001092331 | AAC | 5 | 50214 | 50228 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | 85091297 |
| 52. | NW_001092331 | CCG | 4 | 50232 | 50243 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85091297 |
| 53. | NW_001092331 | GTG | 4 | 51724 | 51735 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85091297 |
| 54. | NW_001092331 | GGA | 4 | 51953 | 51963 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 55. | NW_001092331 | ATC | 4 | 56059 | 56070 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85091299 |
| 56. | NW_001092331 | CTC | 7 | 58358 | 58378 | 21 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 57. | NW_001092331 | CTT | 4 | 58503 | 58513 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 58. | NW_001092331 | CTT | 5 | 61422 | 61436 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 59. | NW_001092331 | CGA | 4 | 62171 | 62182 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85091303 |
| 60. | NW_001092331 | AGA | 9 | 62174 | 62200 | 27 | 66.67% | 0.00% | 33.33% | 0.00% | 85091303 |
| 61. | NW_001092331 | GGC | 4 | 62621 | 62632 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85091303 |
| 62. | NW_001092331 | GCG | 5 | 62705 | 62720 | 16 | 0.00% | 0.00% | 66.67% | 33.33% | 85091303 |
| 63. | NW_001092331 | CGT | 4 | 63151 | 63162 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85091303 |
| 64. | NW_001092331 | GGC | 5 | 63827 | 63840 | 14 | 0.00% | 0.00% | 66.67% | 33.33% | 85091303 |
| 65. | NW_001092331 | CCA | 4 | 66755 | 66765 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85091305 |
| 66. | NW_001092331 | CAC | 4 | 66876 | 66888 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | 85091305 |
| 67. | NW_001092331 | GTG | 5 | 68985 | 68998 | 14 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 68. | NW_001092331 | CTC | 5 | 70749 | 70763 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85091307 |
| 69. | NW_001092331 | TGG | 7 | 71576 | 71596 | 21 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 70. | NW_001092331 | GAT | 4 | 73133 | 73145 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 71. | NW_001092331 | CTG | 11 | 74640 | 74672 | 33 | 0.00% | 33.33% | 33.33% | 33.33% | 85091309 |
| 72. | NW_001092331 | GGA | 5 | 74928 | 74942 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85091309 |
| 73. | NW_001092331 | AGG | 8 | 74945 | 74968 | 24 | 33.33% | 0.00% | 66.67% | 0.00% | 85091309 |
| 74. | NW_001092331 | TGC | 5 | 75220 | 75234 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85091309 |
| 75. | NW_001092331 | CTG | 5 | 75316 | 75330 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85091309 |
| 76. | NW_001092331 | TGT | 5 | 75329 | 75342 | 14 | 0.00% | 66.67% | 33.33% | 0.00% | 85091309 |
| 77. | NW_001092331 | GGA | 4 | 76464 | 76475 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85091309 |
| 78. | NW_001092331 | GAG | 4 | 76654 | 76664 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | 85091309 |
| 79. | NW_001092331 | GTC | 4 | 80103 | 80114 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |