List of
Imperfect Hexa
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092039 | ACCTGA | 4 | 18393 | 18416 | 24 | 33.33% | 16.67% | 16.67% | 33.33% | Non-Coding |
| 2. | NW_001092039 | ACCATC | 3 | 21267 | 21284 | 18 | 33.33% | 16.67% | 0.00% | 50.00% | Non-Coding |
| 3. | NW_001092039 | GTTGGT | 4 | 31584 | 31606 | 23 | 0.00% | 50.00% | 50.00% | 0.00% | 85086575 |
| 4. | NW_001092039 | ATCGTG | 4 | 33059 | 33082 | 24 | 16.67% | 33.33% | 33.33% | 16.67% | 85086575 |
| 5. | NW_001092039 | TCAGCG | 3 | 49759 | 49776 | 18 | 16.67% | 16.67% | 33.33% | 33.33% | 85086591 |
| 6. | NW_001092039 | CGGGCG | 3 | 57564 | 57580 | 17 | 0.00% | 0.00% | 66.67% | 33.33% | 85086599 |
| 7. | NW_001092039 | GCTGTG | 3 | 61423 | 61440 | 18 | 0.00% | 33.33% | 50.00% | 16.67% | 85086603 |
| 8. | NW_001092039 | TTGCCG | 3 | 62385 | 62408 | 24 | 0.00% | 33.33% | 33.33% | 33.33% | 85086603 |
| 9. | NW_001092039 | TCCGGC | 3 | 77661 | 77678 | 18 | 0.00% | 16.67% | 33.33% | 50.00% | 85086616 |
| 10. | NW_001092039 | GTTGCC | 4 | 81753 | 81776 | 24 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 11. | NW_001092039 | GGAGCG | 4 | 90712 | 90735 | 24 | 16.67% | 0.00% | 66.67% | 16.67% | 85086634 |
| 12. | NW_001092039 | GTGCCG | 3 | 91051 | 91068 | 18 | 0.00% | 16.67% | 50.00% | 33.33% | 85086634 |
| 13. | NW_001092039 | CGGGTG | 3 | 101103 | 101120 | 18 | 0.00% | 16.67% | 66.67% | 16.67% | 85086646 |
| 14. | NW_001092039 | GGCTCA | 3 | 104215 | 104232 | 18 | 16.67% | 16.67% | 33.33% | 33.33% | 85086649 |
| 15. | NW_001092039 | AAGGGG | 3 | 104399 | 104416 | 18 | 33.33% | 0.00% | 66.67% | 0.00% | 85086649 |
| 16. | NW_001092039 | AACAGG | 3 | 110167 | 110184 | 18 | 50.00% | 0.00% | 33.33% | 16.67% | Non-Coding |
| 17. | NW_001092039 | TGTTTA | 3 | 138077 | 138095 | 19 | 16.67% | 66.67% | 16.67% | 0.00% | 85086698 |
| 18. | NW_001092039 | TTGTGG | 4 | 140287 | 140310 | 24 | 0.00% | 50.00% | 50.00% | 0.00% | 85086703 |
| 19. | NW_001092039 | ATCAGA | 3 | 150950 | 150967 | 18 | 50.00% | 16.67% | 16.67% | 16.67% | Non-Coding |
| 20. | NW_001092039 | TCCTCT | 3 | 151313 | 151330 | 18 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 21. | NW_001092039 | ACTCCT | 3 | 151406 | 151423 | 18 | 16.67% | 33.33% | 0.00% | 50.00% | Non-Coding |
| 22. | NW_001092039 | ATCCTT | 3 | 157953 | 157970 | 18 | 16.67% | 50.00% | 0.00% | 33.33% | Non-Coding |
| 23. | NW_001092039 | TGCTGT | 3 | 162411 | 162428 | 18 | 0.00% | 50.00% | 33.33% | 16.67% | 85086727 |
| 24. | NW_001092039 | AAAAAG | 3 | 165616 | 165633 | 18 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 25. | NW_001092039 | GTCGCA | 3 | 166010 | 166026 | 17 | 16.67% | 16.67% | 33.33% | 33.33% | Non-Coding |
| 26. | NW_001092039 | CTTTCT | 3 | 173686 | 173703 | 18 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 27. | NW_001092039 | GTACCC | 3 | 179147 | 179165 | 19 | 16.67% | 16.67% | 16.67% | 50.00% | Non-Coding |
| 28. | NW_001092039 | TGTATG | 7 | 179328 | 179369 | 42 | 16.67% | 50.00% | 33.33% | 0.00% | Non-Coding |
| 29. | NW_001092039 | CGGCAC | 6 | 183363 | 183398 | 36 | 16.67% | 0.00% | 33.33% | 50.00% | 85086744 |
| 30. | NW_001092039 | GCGACG | 3 | 209987 | 210004 | 18 | 16.67% | 0.00% | 50.00% | 33.33% | 85086761 |
| 31. | NW_001092039 | GCCTCG | 3 | 212571 | 212588 | 18 | 0.00% | 16.67% | 33.33% | 50.00% | 85086765 |
| 32. | NW_001092039 | CTCTCC | 4 | 214959 | 214982 | 24 | 0.00% | 33.33% | 0.00% | 66.67% | 85086768 |
| 33. | NW_001092039 | CTGTTC | 4 | 223540 | 223563 | 24 | 0.00% | 50.00% | 16.67% | 33.33% | 85086782 |
| 34. | NW_001092039 | AGGACA | 3 | 234135 | 234152 | 18 | 50.00% | 0.00% | 33.33% | 16.67% | Non-Coding |
| 35. | NW_001092039 | TCCATA | 3 | 235433 | 235450 | 18 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 36. | NW_001092039 | GGTTGA | 5 | 237094 | 237123 | 30 | 16.67% | 33.33% | 50.00% | 0.00% | 85086791 |
| 37. | NW_001092039 | GCCCCG | 3 | 240027 | 240044 | 18 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 38. | NW_001092039 | AACAGC | 4 | 244476 | 244504 | 29 | 50.00% | 0.00% | 16.67% | 33.33% | Non-Coding |
| 39. | NW_001092039 | CCCACC | 4 | 266902 | 266925 | 24 | 16.67% | 0.00% | 0.00% | 83.33% | 85086822 |
| 40. | NW_001092039 | CCATCC | 3 | 271748 | 271766 | 19 | 16.67% | 16.67% | 0.00% | 66.67% | 85086826 |
| 41. | NW_001092039 | CCTGCC | 3 | 274543 | 274560 | 18 | 0.00% | 16.67% | 16.67% | 66.67% | 85086831 |
| 42. | NW_001092039 | TCCCCT | 4 | 280536 | 280559 | 24 | 0.00% | 33.33% | 0.00% | 66.67% | 85086843 |
| 43. | NW_001092039 | CACATA | 3 | 287213 | 287230 | 18 | 50.00% | 16.67% | 0.00% | 33.33% | Non-Coding |
| 44. | NW_001092039 | AAAAGA | 3 | 295425 | 295442 | 18 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 45. | NW_001092039 | CACCAG | 3 | 301589 | 301606 | 18 | 33.33% | 0.00% | 16.67% | 50.00% | 85086870 |
| 46. | NW_001092039 | CAACAG | 3 | 301664 | 301681 | 18 | 50.00% | 0.00% | 16.67% | 33.33% | 85086870 |
| 47. | NW_001092039 | TGCTGT | 5 | 314109 | 314138 | 30 | 0.00% | 50.00% | 33.33% | 16.67% | 85086891 |
| 48. | NW_001092039 | TTTTCT | 3 | 316299 | 316316 | 18 | 0.00% | 83.33% | 0.00% | 16.67% | 85086895 |
| 49. | NW_001092039 | TGGTGT | 3 | 316744 | 316761 | 18 | 0.00% | 50.00% | 50.00% | 0.00% | 85086895 |
| 50. | NW_001092039 | AAGAGG | 7 | 316765 | 316806 | 42 | 50.00% | 0.00% | 50.00% | 0.00% | 85086895 |
| 51. | NW_001092039 | CTAAAA | 3 | 318745 | 318763 | 19 | 66.67% | 16.67% | 0.00% | 16.67% | Non-Coding |
| 52. | NW_001092039 | AGTCCA | 3 | 344410 | 344427 | 18 | 33.33% | 16.67% | 16.67% | 33.33% | 85086919 |
| 53. | NW_001092039 | ATCCAA | 3 | 344508 | 344525 | 18 | 50.00% | 16.67% | 0.00% | 33.33% | 85086919 |
| 54. | NW_001092039 | TTGGAT | 4 | 344727 | 344750 | 24 | 16.67% | 50.00% | 33.33% | 0.00% | 85086919 |
| 55. | NW_001092039 | GCTTCC | 3 | 360387 | 360404 | 18 | 0.00% | 33.33% | 16.67% | 50.00% | 85086940 |
| 56. | NW_001092039 | GAAAGA | 21 | 393661 | 393787 | 127 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 57. | NW_001092039 | CTGTTG | 4 | 394603 | 394625 | 23 | 0.00% | 50.00% | 33.33% | 16.67% | 85086970 |
| 58. | NW_001092039 | TCTTTT | 5 | 405826 | 405854 | 29 | 0.00% | 83.33% | 0.00% | 16.67% | Non-Coding |
| 59. | NW_001092039 | GTCATG | 4 | 407914 | 407937 | 24 | 16.67% | 33.33% | 33.33% | 16.67% | Non-Coding |
| 60. | NW_001092039 | TTCTTT | 3 | 409067 | 409084 | 18 | 0.00% | 83.33% | 0.00% | 16.67% | Non-Coding |
| 61. | NW_001092039 | AAAATA | 3 | 410156 | 410174 | 19 | 83.33% | 16.67% | 0.00% | 0.00% | Non-Coding |
| 62. | NW_001092039 | GCGACT | 3 | 412885 | 412902 | 18 | 16.67% | 16.67% | 33.33% | 33.33% | Non-Coding |
| 63. | NW_001092039 | TCCGAC | 4 | 422404 | 422427 | 24 | 16.67% | 16.67% | 16.67% | 50.00% | 85087006 |
| 64. | NW_001092039 | AGGAAG | 3 | 430738 | 430755 | 18 | 50.00% | 0.00% | 50.00% | 0.00% | 85087014 |
| 65. | NW_001092039 | CAATTT | 3 | 457327 | 457344 | 18 | 33.33% | 50.00% | 0.00% | 16.67% | 85087044 |
| 66. | NW_001092039 | CGGCAG | 3 | 466396 | 466413 | 18 | 16.67% | 0.00% | 50.00% | 33.33% | 85087052 |
| 67. | NW_001092039 | GGGGAC | 3 | 469144 | 469161 | 18 | 16.67% | 0.00% | 66.67% | 16.67% | 85087056 |
| 68. | NW_001092039 | CAATTC | 3 | 477081 | 477099 | 19 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 69. | NW_001092039 | CTAATC | 3 | 488675 | 488692 | 18 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 70. | NW_001092039 | TTAATA | 5 | 489963 | 489992 | 30 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 71. | NW_001092039 | ATAGTA | 3 | 489993 | 490010 | 18 | 50.00% | 33.33% | 16.67% | 0.00% | Non-Coding |
| 72. | NW_001092039 | CTTATA | 3 | 492186 | 492203 | 18 | 33.33% | 50.00% | 0.00% | 16.67% | Non-Coding |
| 73. | NW_001092039 | AGCTAT | 3 | 507580 | 507597 | 18 | 33.33% | 33.33% | 16.67% | 16.67% | Non-Coding |