List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092027 | TTA | 4 | 754 | 765 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092027 | AGA | 4 | 2260 | 2271 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 3. | NW_001092027 | TTA | 4 | 2964 | 2975 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 4. | NW_001092027 | ATA | 4 | 3321 | 3332 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 5. | NW_001092027 | AAT | 4 | 3835 | 3846 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 6. | NW_001092027 | AGA | 4 | 4998 | 5008 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85082820 |
| 7. | NW_001092027 | GTC | 4 | 10522 | 10533 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 8. | NW_001092027 | TTC | 4 | 14447 | 14457 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85082833 |
| 9. | NW_001092027 | CTC | 5 | 14464 | 14478 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85082833 |
| 10. | NW_001092027 | GGA | 4 | 14942 | 14953 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85082833 |
| 11. | NW_001092027 | CTG | 4 | 19417 | 19428 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85082837 |
| 12. | NW_001092027 | CAT | 7 | 20024 | 20043 | 20 | 33.33% | 33.33% | 0.00% | 33.33% | 85082837 |
| 13. | NW_001092027 | CAT | 5 | 20600 | 20614 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | 85082837 |
| 14. | NW_001092027 | GCC | 4 | 20857 | 20868 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85082837 |
| 15. | NW_001092027 | CGA | 4 | 24288 | 24299 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 16. | NW_001092027 | GGC | 4 | 26016 | 26027 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85082841 |
| 17. | NW_001092027 | GCT | 4 | 26631 | 26642 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85082841 |
| 18. | NW_001092027 | GTG | 4 | 26827 | 26838 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85082841 |
| 19. | NW_001092027 | GAG | 4 | 27540 | 27551 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85082841 |
| 20. | NW_001092027 | CAG | 4 | 29573 | 29584 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 21. | NW_001092027 | CCA | 11 | 29870 | 29901 | 32 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 22. | NW_001092027 | TGA | 4 | 31422 | 31434 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 23. | NW_001092027 | TCC | 4 | 32680 | 32690 | 11 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 24. | NW_001092027 | CTT | 7 | 32848 | 32868 | 21 | 0.00% | 66.67% | 0.00% | 33.33% | 85082848 |
| 25. | NW_001092027 | ATG | 4 | 33030 | 33041 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85082848 |
| 26. | NW_001092027 | TGT | 7 | 33034 | 33054 | 21 | 0.00% | 66.67% | 33.33% | 0.00% | 85082848 |
| 27. | NW_001092027 | GTG | 5 | 33086 | 33100 | 15 | 0.00% | 33.33% | 66.67% | 0.00% | 85082848 |
| 28. | NW_001092027 | GAG | 4 | 33167 | 33178 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85082848 |
| 29. | NW_001092027 | AAG | 4 | 33242 | 33253 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85082848 |
| 30. | NW_001092027 | TTC | 4 | 33446 | 33456 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 31. | NW_001092027 | CTT | 4 | 35276 | 35286 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 32. | NW_001092027 | TGT | 4 | 36062 | 36073 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85082852 |
| 33. | NW_001092027 | AGA | 4 | 37699 | 37710 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85082852 |
| 34. | NW_001092027 | TGA | 4 | 39111 | 39121 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85082852 |
| 35. | NW_001092027 | GAC | 4 | 39510 | 39521 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 36. | NW_001092027 | CAT | 4 | 41743 | 41753 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 37. | NW_001092027 | GCA | 4 | 42646 | 42657 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 38. | NW_001092027 | AGT | 4 | 43562 | 43574 | 13 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 39. | NW_001092027 | AGA | 4 | 43666 | 43677 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 40. | NW_001092027 | GCA | 4 | 44163 | 44174 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 41. | NW_001092027 | CGA | 4 | 45090 | 45100 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85082860 |
| 42. | NW_001092027 | GAG | 5 | 46224 | 46237 | 14 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 43. | NW_001092027 | TGA | 4 | 49087 | 49097 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 44. | NW_001092027 | TGT | 5 | 50979 | 50993 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | 85082864 |
| 45. | NW_001092027 | CAC | 7 | 51253 | 51273 | 21 | 33.33% | 0.00% | 0.00% | 66.67% | 85082864 |
| 46. | NW_001092027 | TGC | 4 | 52527 | 52538 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85082868 |
| 47. | NW_001092027 | AGG | 4 | 53891 | 53902 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85082868 |
| 48. | NW_001092027 | GAA | 20 | 55404 | 55464 | 61 | 66.67% | 0.00% | 33.33% | 0.00% | 85082872 |
| 49. | NW_001092027 | TAT | 5 | 57046 | 57060 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 50. | NW_001092027 | TAA | 5 | 57277 | 57291 | 15 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 51. | NW_001092027 | TAA | 7 | 57383 | 57403 | 21 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 52. | NW_001092027 | TAA | 4 | 57511 | 57524 | 14 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 53. | NW_001092027 | AGG | 5 | 57582 | 57596 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 54. | NW_001092027 | TAT | 4 | 57685 | 57695 | 11 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 55. | NW_001092027 | ATA | 4 | 57870 | 57881 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 56. | NW_001092027 | AGT | 4 | 58355 | 58365 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 57. | NW_001092027 | ATT | 4 | 58852 | 58863 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 58. | NW_001092027 | ATT | 4 | 58921 | 58932 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 59. | NW_001092027 | TAC | 4 | 58995 | 59006 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 60. | NW_001092027 | GAA | 4 | 59359 | 59370 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 61. | NW_001092027 | AAT | 4 | 59581 | 59592 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 62. | NW_001092027 | TAC | 5 | 59601 | 59615 | 15 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 63. | NW_001092027 | TAA | 4 | 61026 | 61036 | 11 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 64. | NW_001092027 | TAA | 5 | 61805 | 61819 | 15 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 65. | NW_001092027 | GTA | 4 | 62282 | 62293 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 66. | NW_001092027 | TGA | 4 | 62391 | 62402 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 67. | NW_001092027 | ATA | 4 | 62450 | 62461 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 68. | NW_001092027 | ATA | 4 | 62632 | 62643 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 69. | NW_001092027 | TAA | 4 | 63849 | 63861 | 13 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 70. | NW_001092027 | CTC | 5 | 64826 | 64840 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85082880 |
| 71. | NW_001092027 | CTT | 4 | 64851 | 64861 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85082880 |
| 72. | NW_001092027 | TGT | 4 | 65096 | 65107 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85082880 |
| 73. | NW_001092027 | ATC | 4 | 66320 | 66331 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85082880 |
| 74. | NW_001092027 | GTA | 4 | 67878 | 67889 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 75. | NW_001092027 | CAG | 4 | 72240 | 72253 | 14 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 76. | NW_001092027 | TAC | 4 | 73217 | 73227 | 11 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 77. | NW_001092027 | AGA | 4 | 74639 | 74650 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85082883 |
| 78. | NW_001092027 | AAG | 5 | 74874 | 74888 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85082883 |
| 79. | NW_001092027 | CAT | 4 | 75170 | 75181 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85082883 |
| 80. | NW_001092027 | GAG | 4 | 75516 | 75527 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85082883 |
| 81. | NW_001092027 | CTT | 4 | 75734 | 75745 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85082883 |
| 82. | NW_001092027 | ACA | 4 | 78932 | 78944 | 13 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 83. | NW_001092027 | TCA | 4 | 79047 | 79058 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 84. | NW_001092027 | TCC | 4 | 80785 | 80796 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85082887 |
| 85. | NW_001092027 | GCT | 4 | 80904 | 80914 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | 85082887 |
| 86. | NW_001092027 | ACG | 4 | 81351 | 81361 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85082887 |
| 87. | NW_001092027 | TCT | 4 | 84255 | 84267 | 13 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 88. | NW_001092027 | GAT | 6 | 85484 | 85502 | 19 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 89. | NW_001092027 | CTT | 8 | 86643 | 86666 | 24 | 0.00% | 66.67% | 0.00% | 33.33% | 85082895 |
| 90. | NW_001092027 | CTC | 4 | 87330 | 87341 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85082895 |
| 91. | NW_001092027 | AGA | 4 | 88184 | 88195 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85082895 |
| 92. | NW_001092027 | GGA | 4 | 93013 | 93024 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85082899 |
| 93. | NW_001092027 | GAC | 4 | 93250 | 93261 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85082899 |
| 94. | NW_001092027 | ACC | 4 | 93277 | 93287 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | 85082899 |
| 95. | NW_001092027 | ACC | 4 | 93378 | 93389 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85082899 |
| 96. | NW_001092027 | GAT | 5 | 93514 | 93528 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85082899 |
| 97. | NW_001092027 | GAC | 5 | 93526 | 93540 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85082899 |
| 98. | NW_001092027 | TAC | 4 | 93633 | 93644 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85082899 |
| 99. | NW_001092027 | TGC | 8 | 93654 | 93677 | 24 | 0.00% | 33.33% | 33.33% | 33.33% | 85082899 |
| 100. | NW_001092027 | AGC | 4 | 93802 | 93813 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85082899 |
| 101. | NW_001092027 | TGC | 9 | 95086 | 95113 | 28 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 102. | NW_001092027 | TGT | 9 | 96268 | 96294 | 27 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 103. | NW_001092027 | GAC | 4 | 97008 | 97020 | 13 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 104. | NW_001092027 | CTT | 4 | 98004 | 98015 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 105. | NW_001092027 | TTC | 4 | 98160 | 98170 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 106. | NW_001092027 | TCA | 4 | 100594 | 100606 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 107. | NW_001092027 | CAC | 4 | 102248 | 102259 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85082907 |
| 108. | NW_001092027 | ACA | 4 | 102263 | 102273 | 11 | 66.67% | 0.00% | 0.00% | 33.33% | 85082907 |
| 109. | NW_001092027 | CCT | 5 | 102460 | 102473 | 14 | 0.00% | 33.33% | 0.00% | 66.67% | 85082907 |
| 110. | NW_001092027 | TCT | 4 | 106976 | 106986 | 11 | 0.00% | 66.67% | 0.00% | 33.33% | 85082915 |
| 111. | NW_001092027 | TGT | 4 | 107008 | 107019 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85082915 |
| 112. | NW_001092027 | ACA | 11 | 109233 | 109266 | 34 | 66.67% | 0.00% | 0.00% | 33.33% | 85082920 |
| 113. | NW_001092027 | CAC | 5 | 110642 | 110655 | 14 | 33.33% | 0.00% | 0.00% | 66.67% | 85082924 |
| 114. | NW_001092027 | GAT | 4 | 111393 | 111404 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85082924 |
| 115. | NW_001092027 | TGG | 4 | 111534 | 111546 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | 85082924 |
| 116. | NW_001092027 | GAT | 4 | 118240 | 118250 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | 85082937 |
| 117. | NW_001092027 | GAG | 4 | 118983 | 118993 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 118. | NW_001092027 | CGG | 4 | 120205 | 120215 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 119. | NW_001092027 | GGA | 4 | 120630 | 120641 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85082941 |
| 120. | NW_001092027 | GAA | 4 | 121689 | 121700 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85082941 |
| 121. | NW_001092027 | GTG | 4 | 122504 | 122515 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85082941 |
| 122. | NW_001092027 | TCG | 19 | 122642 | 122698 | 57 | 0.00% | 33.33% | 33.33% | 33.33% | 85082941 |
| 123. | NW_001092027 | CAA | 4 | 123191 | 123202 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 124. | NW_001092027 | TGC | 4 | 123743 | 123754 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85082945 |
| 125. | NW_001092027 | CGT | 7 | 124873 | 124893 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | 85082949 |
| 126. | NW_001092027 | GAA | 4 | 126460 | 126471 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85082953 |
| 127. | NW_001092027 | GAG | 5 | 131799 | 131813 | 15 | 33.33% | 0.00% | 66.67% | 0.00% | 85082962 |
| 128. | NW_001092027 | GGC | 4 | 131877 | 131888 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85082962 |
| 129. | NW_001092027 | CGG | 4 | 131996 | 132007 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85082962 |
| 130. | NW_001092027 | CCG | 5 | 132162 | 132176 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | 85082962 |
| 131. | NW_001092027 | AGC | 4 | 133894 | 133905 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85082966 |
| 132. | NW_001092027 | TCC | 4 | 134689 | 134700 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85082966 |
| 133. | NW_001092027 | TGC | 4 | 134698 | 134709 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85082966 |