List of
Imperfect Tetra
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092020 | GGTA | 3 | 4319 | 4330 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 2. | NW_001092020 | AGGC | 11 | 4499 | 4541 | 43 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 3. | NW_001092020 | TTGC | 3 | 5835 | 5845 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85081553 |
| 4. | NW_001092020 | CTTT | 3 | 7097 | 7108 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 5. | NW_001092020 | CTGG | 3 | 8339 | 8350 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | 85081557 |
| 6. | NW_001092020 | TATG | 3 | 9608 | 9618 | 11 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 7. | NW_001092020 | CCTA | 3 | 10327 | 10338 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 8. | NW_001092020 | ACCT | 3 | 10380 | 10392 | 13 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 9. | NW_001092020 | CCTC | 3 | 10426 | 10437 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 10. | NW_001092020 | ACCT | 3 | 10448 | 10459 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 11. | NW_001092020 | CATA | 4 | 15970 | 15985 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 12. | NW_001092020 | TCTT | 3 | 16076 | 16087 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 13. | NW_001092020 | CTTT | 3 | 16196 | 16207 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 14. | NW_001092020 | GCTC | 3 | 22320 | 22331 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 85081573 |
| 15. | NW_001092020 | GCTT | 3 | 23358 | 23368 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | 85081573 |
| 16. | NW_001092020 | CACC | 3 | 26876 | 26887 | 12 | 25.00% | 0.00% | 0.00% | 75.00% | Non-Coding |
| 17. | NW_001092020 | GTCG | 3 | 29755 | 29767 | 13 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 18. | NW_001092020 | CTCA | 3 | 30173 | 30185 | 13 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 19. | NW_001092020 | CCAT | 3 | 30581 | 30591 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 20. | NW_001092020 | TTGC | 3 | 33544 | 33555 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | 85081586 |
| 21. | NW_001092020 | CTTG | 3 | 44902 | 44912 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 22. | NW_001092020 | GTAG | 3 | 46113 | 46125 | 13 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 23. | NW_001092020 | TCTG | 3 | 48808 | 48818 | 11 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 24. | NW_001092020 | ATGG | 6 | 49753 | 49781 | 29 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 25. | NW_001092020 | GCAT | 3 | 49995 | 50006 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 26. | NW_001092020 | CTCA | 3 | 50220 | 50231 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | 85081606 |
| 27. | NW_001092020 | TGGT | 4 | 52746 | 52761 | 16 | 0.00% | 50.00% | 50.00% | 0.00% | 85081606 |
| 28. | NW_001092020 | CCAG | 3 | 53937 | 53948 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 29. | NW_001092020 | TCCA | 3 | 54227 | 54238 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 30. | NW_001092020 | TCAT | 4 | 54544 | 54559 | 16 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 31. | NW_001092020 | CTCG | 3 | 55112 | 55122 | 11 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 32. | NW_001092020 | TACT | 3 | 63121 | 63132 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | 85081614 |
| 33. | NW_001092020 | TCAC | 3 | 63926 | 63937 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | 85081614 |
| 34. | NW_001092020 | ATTG | 3 | 65299 | 65309 | 11 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 35. | NW_001092020 | GTCA | 7 | 65750 | 65776 | 27 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 36. | NW_001092020 | CCTA | 4 | 65875 | 65890 | 16 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 37. | NW_001092020 | GAAG | 3 | 66879 | 66891 | 13 | 50.00% | 0.00% | 50.00% | 0.00% | 85081618 |
| 38. | NW_001092020 | GAAA | 3 | 69479 | 69491 | 13 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 39. | NW_001092020 | AACA | 3 | 71477 | 71488 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 40. | NW_001092020 | GTTG | 4 | 73573 | 73588 | 16 | 0.00% | 50.00% | 50.00% | 0.00% | 85081626 |
| 41. | NW_001092020 | GGGA | 3 | 73592 | 73603 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | 85081626 |
| 42. | NW_001092020 | TCTT | 3 | 73678 | 73689 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 85081626 |
| 43. | NW_001092020 | CCTA | 3 | 75446 | 75457 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 44. | NW_001092020 | AACC | 4 | 75958 | 75973 | 16 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 45. | NW_001092020 | ATGG | 3 | 76186 | 76196 | 11 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 46. | NW_001092020 | CAAG | 3 | 76731 | 76741 | 11 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 47. | NW_001092020 | TTTC | 3 | 76926 | 76938 | 13 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 48. | NW_001092020 | CAAT | 5 | 77122 | 77141 | 20 | 50.00% | 25.00% | 0.00% | 25.00% | 85081635 |
| 49. | NW_001092020 | ATCA | 6 | 77144 | 77167 | 24 | 50.00% | 25.00% | 0.00% | 25.00% | 85081635 |
| 50. | NW_001092020 | TTCT | 4 | 77168 | 77183 | 16 | 0.00% | 75.00% | 0.00% | 25.00% | 85081635 |
| 51. | NW_001092020 | CCAT | 3 | 77197 | 77207 | 11 | 25.00% | 25.00% | 0.00% | 50.00% | 85081635 |
| 52. | NW_001092020 | GGTT | 7 | 77664 | 77691 | 28 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 53. | NW_001092020 | ACCT | 3 | 80822 | 80833 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 54. | NW_001092020 | CTGG | 3 | 81347 | 81359 | 13 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 55. | NW_001092020 | GCGA | 3 | 81443 | 81454 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 56. | NW_001092020 | CAGT | 5 | 82064 | 82083 | 20 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 57. | NW_001092020 | GCCC | 3 | 83089 | 83101 | 13 | 0.00% | 0.00% | 25.00% | 75.00% | 85081643 |
| 58. | NW_001092020 | CGCC | 3 | 83238 | 83248 | 11 | 0.00% | 0.00% | 25.00% | 75.00% | 85081643 |
| 59. | NW_001092020 | CCGC | 3 | 83927 | 83938 | 12 | 0.00% | 0.00% | 25.00% | 75.00% | 85081643 |
| 60. | NW_001092020 | ATGA | 4 | 84338 | 84353 | 16 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 61. | NW_001092020 | CCAT | 5 | 85123 | 85142 | 20 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 62. | NW_001092020 | GGGA | 3 | 87863 | 87873 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | 85081647 |
| 63. | NW_001092020 | GCAT | 3 | 90946 | 90956 | 11 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 64. | NW_001092020 | GGTA | 4 | 94387 | 94402 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 65. | NW_001092020 | ATGT | 5 | 94825 | 94845 | 21 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 66. | NW_001092020 | AAAT | 3 | 95065 | 95075 | 11 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 67. | NW_001092020 | GCAA | 3 | 99317 | 99328 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 68. | NW_001092020 | TTTC | 3 | 100509 | 100519 | 11 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 69. | NW_001092020 | TTTA | 3 | 102921 | 102932 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 70. | NW_001092020 | TTAA | 3 | 102979 | 102989 | 11 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 71. | NW_001092020 | ATTT | 3 | 103651 | 103661 | 11 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 72. | NW_001092020 | CCCT | 3 | 103961 | 103971 | 11 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 73. | NW_001092020 | AGGG | 3 | 104550 | 104560 | 11 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 74. | NW_001092020 | TAAT | 3 | 105051 | 105062 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |