List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092016 | TAT | 5 | 364 | 378 | 15 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 2. | NW_001092016 | TAT | 4 | 976 | 987 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 3. | NW_001092016 | AGT | 4 | 1058 | 1069 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 4. | NW_001092016 | TAT | 4 | 1938 | 1949 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 5. | NW_001092016 | CAA | 4 | 2932 | 2943 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 6. | NW_001092016 | CTG | 4 | 3616 | 3627 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85080952 |
| 7. | NW_001092016 | TGC | 4 | 10358 | 10369 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85080952 |
| 8. | NW_001092016 | AAG | 4 | 10370 | 10380 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | 85080952 |
| 9. | NW_001092016 | CTC | 5 | 11567 | 11581 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85080952 |
| 10. | NW_001092016 | CCG | 5 | 14920 | 14934 | 15 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 11. | NW_001092016 | GTG | 4 | 15100 | 15112 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 12. | NW_001092016 | TGA | 4 | 17057 | 17068 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85080958 |
| 13. | NW_001092016 | CTG | 4 | 18374 | 18384 | 11 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 14. | NW_001092016 | GAT | 4 | 18635 | 18645 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 15. | NW_001092016 | TGG | 4 | 18726 | 18737 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 16. | NW_001092016 | GCG | 4 | 20858 | 20869 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | Non-Coding |
| 17. | NW_001092016 | CCG | 4 | 27442 | 27453 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85080972 |
| 18. | NW_001092016 | GAC | 5 | 27501 | 27515 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85080972 |
| 19. | NW_001092016 | GGC | 4 | 27510 | 27521 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85080972 |
| 20. | NW_001092016 | CGA | 4 | 27596 | 27607 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85080972 |
| 21. | NW_001092016 | GAC | 12 | 27954 | 27989 | 36 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 22. | NW_001092016 | GGA | 4 | 28590 | 28600 | 11 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 23. | NW_001092016 | CAA | 5 | 28858 | 28872 | 15 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 24. | NW_001092016 | CAC | 4 | 29178 | 29189 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 25. | NW_001092016 | CGC | 4 | 29768 | 29779 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 26. | NW_001092016 | AAG | 4 | 30494 | 30504 | 11 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 27. | NW_001092016 | TTG | 5 | 30651 | 30665 | 15 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 28. | NW_001092016 | TCA | 4 | 33408 | 33420 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | 85080981 |
| 29. | NW_001092016 | CCA | 4 | 39894 | 39905 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 30. | NW_001092016 | TAG | 4 | 41746 | 41756 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 31. | NW_001092016 | ACA | 4 | 42033 | 42044 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 32. | NW_001092016 | GAG | 4 | 42606 | 42617 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85080997 |
| 33. | NW_001092016 | CTG | 6 | 42795 | 42812 | 18 | 0.00% | 33.33% | 33.33% | 33.33% | 85080997 |
| 34. | NW_001092016 | CTG | 4 | 42856 | 42867 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85080997 |
| 35. | NW_001092016 | CTA | 4 | 42873 | 42884 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85080997 |
| 36. | NW_001092016 | GGT | 4 | 45604 | 45615 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85081001 |
| 37. | NW_001092016 | CAT | 10 | 45970 | 46000 | 31 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 38. | NW_001092016 | CAC | 4 | 46220 | 46231 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 39. | NW_001092016 | AGT | 4 | 46891 | 46901 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 40. | NW_001092016 | TCA | 4 | 47272 | 47285 | 14 | 33.33% | 33.33% | 0.00% | 33.33% | 85081005 |
| 41. | NW_001092016 | GTA | 4 | 47810 | 47820 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 42. | NW_001092016 | GCC | 4 | 49013 | 49024 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85081010 |
| 43. | NW_001092016 | CCT | 4 | 49111 | 49122 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85081010 |
| 44. | NW_001092016 | TGC | 5 | 49170 | 49184 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85081010 |
| 45. | NW_001092016 | TGT | 4 | 49452 | 49463 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85081010 |
| 46. | NW_001092016 | TGC | 5 | 49470 | 49484 | 15 | 0.00% | 33.33% | 33.33% | 33.33% | 85081010 |
| 47. | NW_001092016 | GTT | 14 | 49798 | 49839 | 42 | 0.00% | 66.67% | 33.33% | 0.00% | 85081010 |
| 48. | NW_001092016 | TGT | 4 | 49950 | 49961 | 12 | 0.00% | 66.67% | 33.33% | 0.00% | 85081010 |
| 49. | NW_001092016 | CTA | 4 | 50115 | 50126 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85081010 |
| 50. | NW_001092016 | TGG | 4 | 50155 | 50167 | 13 | 0.00% | 33.33% | 66.67% | 0.00% | 85081010 |
| 51. | NW_001092016 | ACA | 8 | 50553 | 50577 | 25 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 52. | NW_001092016 | ATC | 4 | 51104 | 51115 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 53. | NW_001092016 | ACT | 4 | 51196 | 51207 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85081014 |
| 54. | NW_001092016 | CGA | 4 | 51455 | 51466 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85081014 |
| 55. | NW_001092016 | GCC | 4 | 53385 | 53396 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85081014 |
| 56. | NW_001092016 | TGG | 24 | 55018 | 55086 | 69 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 57. | NW_001092016 | GCA | 4 | 56364 | 56375 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85081023 |
| 58. | NW_001092016 | GCG | 4 | 56384 | 56396 | 13 | 0.00% | 0.00% | 66.67% | 33.33% | 85081023 |
| 59. | NW_001092016 | TGA | 5 | 56529 | 56543 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 60. | NW_001092016 | ATC | 4 | 58618 | 58630 | 13 | 33.33% | 33.33% | 0.00% | 33.33% | 85081027 |
| 61. | NW_001092016 | ACA | 4 | 62925 | 62936 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 62. | NW_001092016 | AGG | 4 | 64044 | 64055 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85081035 |
| 63. | NW_001092016 | TGG | 4 | 67835 | 67846 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 64. | NW_001092016 | CGA | 4 | 69916 | 69927 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85081038 |
| 65. | NW_001092016 | TGG | 4 | 72667 | 72678 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 66. | NW_001092016 | CAT | 8 | 72833 | 72856 | 24 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 67. | NW_001092016 | ACA | 8 | 74567 | 74590 | 24 | 66.67% | 0.00% | 0.00% | 33.33% | 85081042 |
| 68. | NW_001092016 | ACC | 4 | 74620 | 74631 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85081042 |
| 69. | NW_001092016 | CAA | 16 | 74634 | 74680 | 47 | 66.67% | 0.00% | 0.00% | 33.33% | 85081042 |
| 70. | NW_001092016 | TCA | 7 | 74921 | 74941 | 21 | 33.33% | 33.33% | 0.00% | 33.33% | 85081042 |
| 71. | NW_001092016 | GCA | 7 | 74947 | 74967 | 21 | 33.33% | 0.00% | 33.33% | 33.33% | 85081042 |
| 72. | NW_001092016 | TTC | 4 | 75005 | 75016 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85081042 |
| 73. | NW_001092016 | GCT | 4 | 75104 | 75115 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85081042 |
| 74. | NW_001092016 | TGG | 7 | 75206 | 75226 | 21 | 0.00% | 33.33% | 66.67% | 0.00% | 85081042 |
| 75. | NW_001092016 | CTT | 4 | 76508 | 76519 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85081046 |
| 76. | NW_001092016 | CAA | 4 | 78605 | 78616 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | 85081046 |
| 77. | NW_001092016 | CTT | 4 | 83133 | 83144 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 78. | NW_001092016 | CTC | 4 | 84690 | 84701 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85081050 |
| 79. | NW_001092016 | AGA | 4 | 85253 | 85264 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 80. | NW_001092016 | GGA | 4 | 87008 | 87020 | 13 | 33.33% | 0.00% | 66.67% | 0.00% | 85081054 |
| 81. | NW_001092016 | TCC | 5 | 90755 | 90769 | 15 | 0.00% | 33.33% | 0.00% | 66.67% | 85081062 |
| 82. | NW_001092016 | CTG | 7 | 91808 | 91828 | 21 | 0.00% | 33.33% | 33.33% | 33.33% | 85081062 |
| 83. | NW_001092016 | CTC | 4 | 92337 | 92348 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 84. | NW_001092016 | CCG | 8 | 93044 | 93067 | 24 | 0.00% | 0.00% | 33.33% | 66.67% | 85081067 |
| 85. | NW_001092016 | GGT | 4 | 93417 | 93428 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85081067 |
| 86. | NW_001092016 | TAA | 4 | 95623 | 95635 | 13 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 87. | NW_001092016 | TAT | 4 | 95755 | 95766 | 12 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 88. | NW_001092016 | TAA | 4 | 95785 | 95796 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 89. | NW_001092016 | ATT | 4 | 95893 | 95905 | 13 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 90. | NW_001092016 | TAA | 4 | 97565 | 97576 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 91. | NW_001092016 | TAA | 4 | 97865 | 97876 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 92. | NW_001092016 | ACT | 4 | 97944 | 97955 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 93. | NW_001092016 | TAC | 4 | 98228 | 98239 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |