List of
Imperfect Tri
-nucleotide repeats in Neurospora crassa OR74A
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001092010 | TCA | 4 | 2897 | 2908 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 2. | NW_001092010 | CAA | 4 | 3891 | 3902 | 12 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 3. | NW_001092010 | GAT | 4 | 7160 | 7170 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 4. | NW_001092010 | TGG | 4 | 7241 | 7252 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 5. | NW_001092010 | ACA | 11 | 8546 | 8579 | 34 | 66.67% | 0.00% | 0.00% | 33.33% | Non-Coding |
| 6. | NW_001092010 | CCA | 4 | 10923 | 10934 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85080063 |
| 7. | NW_001092010 | AAT | 4 | 11699 | 11710 | 12 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 8. | NW_001092010 | CCT | 4 | 11945 | 11956 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 9. | NW_001092010 | TCC | 4 | 11965 | 11976 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | Non-Coding |
| 10. | NW_001092010 | CAC | 4 | 11985 | 11996 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 11. | NW_001092010 | CAG | 4 | 11997 | 12008 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 12. | NW_001092010 | ACC | 8 | 13363 | 13386 | 24 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 13. | NW_001092010 | AGA | 5 | 13610 | 13624 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | Non-Coding |
| 14. | NW_001092010 | AGC | 5 | 14686 | 14700 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | 85080068 |
| 15. | NW_001092010 | CCA | 4 | 18482 | 18492 | 11 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 16. | NW_001092010 | GAA | 4 | 18700 | 18711 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85080075 |
| 17. | NW_001092010 | AAG | 4 | 19049 | 19061 | 13 | 66.67% | 0.00% | 33.33% | 0.00% | 85080075 |
| 18. | NW_001092010 | CAC | 4 | 19129 | 19141 | 13 | 33.33% | 0.00% | 0.00% | 66.67% | 85080075 |
| 19. | NW_001092010 | GAC | 4 | 19594 | 19605 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85080075 |
| 20. | NW_001092010 | GAG | 8 | 21697 | 21720 | 24 | 33.33% | 0.00% | 66.67% | 0.00% | 85080079 |
| 21. | NW_001092010 | AGA | 4 | 21723 | 21734 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85080079 |
| 22. | NW_001092010 | ATC | 4 | 22485 | 22496 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85080079 |
| 23. | NW_001092010 | ACC | 11 | 22516 | 22548 | 33 | 33.33% | 0.00% | 0.00% | 66.67% | 85080079 |
| 24. | NW_001092010 | ACC | 4 | 22569 | 22580 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85080079 |
| 25. | NW_001092010 | CGC | 4 | 22657 | 22668 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85080079 |
| 26. | NW_001092010 | AAG | 5 | 22771 | 22785 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85080079 |
| 27. | NW_001092010 | AGA | 4 | 26098 | 26109 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85080083 |
| 28. | NW_001092010 | CAT | 4 | 28855 | 28866 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | 85080088 |
| 29. | NW_001092010 | TGA | 4 | 31112 | 31123 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85080088 |
| 30. | NW_001092010 | CAA | 5 | 32116 | 32131 | 16 | 66.67% | 0.00% | 0.00% | 33.33% | 85080092 |
| 31. | NW_001092010 | TGG | 10 | 32529 | 32558 | 30 | 0.00% | 33.33% | 66.67% | 0.00% | 85080092 |
| 32. | NW_001092010 | CTT | 6 | 33159 | 33179 | 21 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 33. | NW_001092010 | CGG | 4 | 33370 | 33380 | 11 | 0.00% | 0.00% | 66.67% | 33.33% | 85080096 |
| 34. | NW_001092010 | GAA | 4 | 33462 | 33473 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85080096 |
| 35. | NW_001092010 | CTG | 4 | 34597 | 34608 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | 85080096 |
| 36. | NW_001092010 | CAT | 6 | 35643 | 35660 | 18 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 37. | NW_001092010 | GTT | 7 | 41745 | 41764 | 20 | 0.00% | 66.67% | 33.33% | 0.00% | Non-Coding |
| 38. | NW_001092010 | GCC | 4 | 44366 | 44378 | 13 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 39. | NW_001092010 | GCA | 4 | 47097 | 47108 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85080117 |
| 40. | NW_001092010 | CCA | 4 | 47106 | 47117 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85080117 |
| 41. | NW_001092010 | TTC | 4 | 47591 | 47602 | 12 | 0.00% | 66.67% | 0.00% | 33.33% | 85080117 |
| 42. | NW_001092010 | TGT | 8 | 47649 | 47672 | 24 | 0.00% | 66.67% | 33.33% | 0.00% | 85080117 |
| 43. | NW_001092010 | GAT | 5 | 48063 | 48077 | 15 | 33.33% | 33.33% | 33.33% | 0.00% | 85080117 |
| 44. | NW_001092010 | GAA | 5 | 48075 | 48089 | 15 | 66.67% | 0.00% | 33.33% | 0.00% | 85080117 |
| 45. | NW_001092010 | GAC | 4 | 49833 | 49843 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | 85080121 |
| 46. | NW_001092010 | TCC | 4 | 50344 | 50355 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85080121 |
| 47. | NW_001092010 | AGA | 4 | 50534 | 50545 | 12 | 66.67% | 0.00% | 33.33% | 0.00% | 85080121 |
| 48. | NW_001092010 | AGC | 4 | 50543 | 50554 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85080121 |
| 49. | NW_001092010 | TGA | 4 | 54595 | 54606 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 50. | NW_001092010 | CCT | 4 | 54981 | 54992 | 12 | 0.00% | 33.33% | 0.00% | 66.67% | 85080134 |
| 51. | NW_001092010 | GCG | 4 | 55175 | 55186 | 12 | 0.00% | 0.00% | 66.67% | 33.33% | 85080134 |
| 52. | NW_001092010 | GAG | 4 | 55284 | 55295 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85080134 |
| 53. | NW_001092010 | CAG | 4 | 55293 | 55304 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85080134 |
| 54. | NW_001092010 | CCA | 4 | 57066 | 57077 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85080134 |
| 55. | NW_001092010 | TGG | 4 | 60969 | 60979 | 11 | 0.00% | 33.33% | 66.67% | 0.00% | Non-Coding |
| 56. | NW_001092010 | CCA | 4 | 64382 | 64393 | 12 | 33.33% | 0.00% | 0.00% | 66.67% | 85080145 |
| 57. | NW_001092010 | GGC | 5 | 64860 | 64874 | 15 | 0.00% | 0.00% | 66.67% | 33.33% | 85080145 |
| 58. | NW_001092010 | GAT | 4 | 68130 | 68141 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85080149 |
| 59. | NW_001092010 | TCT | 5 | 75318 | 75332 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 60. | NW_001092010 | CTT | 5 | 75334 | 75348 | 15 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 61. | NW_001092010 | GAC | 4 | 75554 | 75564 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 62. | NW_001092010 | TAT | 4 | 75839 | 75851 | 13 | 33.33% | 66.67% | 0.00% | 0.00% | Non-Coding |
| 63. | NW_001092010 | CCG | 4 | 76431 | 76442 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | 85080155 |
| 64. | NW_001092010 | GAT | 4 | 76660 | 76671 | 12 | 33.33% | 33.33% | 33.33% | 0.00% | 85080155 |
| 65. | NW_001092010 | GGA | 4 | 76779 | 76790 | 12 | 33.33% | 0.00% | 66.67% | 0.00% | 85080155 |
| 66. | NW_001092010 | GGT | 4 | 76923 | 76934 | 12 | 0.00% | 33.33% | 66.67% | 0.00% | 85080155 |
| 67. | NW_001092010 | GAG | 5 | 77144 | 77157 | 14 | 33.33% | 0.00% | 66.67% | 0.00% | 85080155 |
| 68. | NW_001092010 | ACT | 4 | 77705 | 77716 | 12 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 69. | NW_001092010 | CCT | 4 | 78781 | 78793 | 13 | 0.00% | 33.33% | 0.00% | 66.67% | 85080159 |
| 70. | NW_001092010 | CAG | 4 | 80883 | 80894 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85080162 |
| 71. | NW_001092010 | ACG | 4 | 83326 | 83337 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | 85080162 |
| 72. | NW_001092010 | GTA | 4 | 84258 | 84268 | 11 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 73. | NW_001092010 | CCG | 4 | 86894 | 86905 | 12 | 0.00% | 0.00% | 33.33% | 66.67% | Non-Coding |
| 74. | NW_001092010 | GAC | 5 | 87131 | 87145 | 15 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 75. | NW_001092010 | TCG | 4 | 87183 | 87194 | 12 | 0.00% | 33.33% | 33.33% | 33.33% | Non-Coding |
| 76. | NW_001092010 | ACG | 4 | 87910 | 87920 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 77. | NW_001092010 | GCA | 4 | 87932 | 87942 | 11 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 78. | NW_001092010 | CAC | 9 | 88047 | 88073 | 27 | 33.33% | 0.00% | 0.00% | 66.67% | Non-Coding |
| 79. | NW_001092010 | CAG | 4 | 88068 | 88079 | 12 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |
| 80. | NW_001092010 | AGC | 8 | 88090 | 88113 | 24 | 33.33% | 0.00% | 33.33% | 33.33% | Non-Coding |