List of
Imperfect Penta
-nucleotide repeats in Cryptococcus neoformans var. neoformans JEC21
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NC_006687 | AGAAG | 3 | 35692 | 35705 | 14 | 60.00% | 0.00% | 40.00% | 0.00% | 58267106 |
| 2. | NC_006687 | TTCGA | 3 | 55388 | 55403 | 16 | 20.00% | 40.00% | 20.00% | 20.00% | 58267126 |
| 3. | NC_006687 | GAAGG | 3 | 77555 | 77568 | 14 | 40.00% | 0.00% | 60.00% | 0.00% | 58267154 |
| 4. | NC_006687 | TGTTC | 3 | 78799 | 78812 | 14 | 0.00% | 60.00% | 20.00% | 20.00% | 58267884 |
| 5. | NC_006687 | GACGC | 3 | 82086 | 82100 | 15 | 20.00% | 0.00% | 40.00% | 40.00% | Non-Coding |
| 6. | NC_006687 | TTTGG | 3 | 91543 | 91558 | 16 | 0.00% | 60.00% | 40.00% | 0.00% | 58267170 |
| 7. | NC_006687 | TGCGT | 3 | 96406 | 96419 | 14 | 0.00% | 40.00% | 40.00% | 20.00% | Non-Coding |
| 8. | NC_006687 | CTTTC | 3 | 98825 | 98838 | 14 | 0.00% | 60.00% | 0.00% | 40.00% | Non-Coding |
| 9. | NC_006687 | CTCCT | 3 | 124117 | 124130 | 14 | 0.00% | 40.00% | 0.00% | 60.00% | 58267908 |
| 10. | NC_006687 | GGGAA | 3 | 125833 | 125847 | 15 | 40.00% | 0.00% | 60.00% | 0.00% | 58267908 |
| 11. | NC_006687 | ATCAA | 3 | 130600 | 130613 | 14 | 60.00% | 20.00% | 0.00% | 20.00% | 58267198 |
| 12. | NC_006687 | TCGCC | 3 | 148804 | 148818 | 15 | 0.00% | 20.00% | 20.00% | 60.00% | 58267220 |
| 13. | NC_006687 | AAACA | 3 | 153917 | 153931 | 15 | 80.00% | 0.00% | 0.00% | 20.00% | Non-Coding |
| 14. | NC_006687 | GGAGA | 3 | 198224 | 198237 | 14 | 40.00% | 0.00% | 60.00% | 0.00% | 58267282 |
| 15. | NC_006687 | AAAGA | 3 | 200989 | 201003 | 15 | 80.00% | 0.00% | 20.00% | 0.00% | 58267286 |
| 16. | NC_006687 | TAAAA | 3 | 202434 | 202447 | 14 | 80.00% | 20.00% | 0.00% | 0.00% | 58268014 |
| 17. | NC_006687 | AAACC | 3 | 202699 | 202713 | 15 | 60.00% | 0.00% | 0.00% | 40.00% | 58268014 |
| 18. | NC_006687 | ACAGC | 3 | 214380 | 214395 | 16 | 40.00% | 0.00% | 20.00% | 40.00% | 58268020 |
| 19. | NC_006687 | GATAC | 3 | 215650 | 215664 | 15 | 40.00% | 20.00% | 20.00% | 20.00% | Non-Coding |
| 20. | NC_006687 | GAAGG | 4 | 239077 | 239096 | 20 | 40.00% | 0.00% | 60.00% | 0.00% | 58267334 |
| 21. | NC_006687 | CAAAA | 3 | 277904 | 277917 | 14 | 80.00% | 0.00% | 0.00% | 20.00% | 58267370 |
| 22. | NC_006687 | GTTTC | 3 | 290481 | 290494 | 14 | 0.00% | 60.00% | 20.00% | 20.00% | Non-Coding |
| 23. | NC_006687 | GGAAA | 3 | 298852 | 298866 | 15 | 60.00% | 0.00% | 40.00% | 0.00% | 58267388 |
| 24. | NC_006687 | TTCTT | 3 | 322697 | 322712 | 16 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 25. | NC_006687 | GAAAA | 3 | 342435 | 342449 | 15 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 26. | NC_006687 | AGAGA | 3 | 361822 | 361836 | 15 | 60.00% | 0.00% | 40.00% | 0.00% | 58267120 |
| 27. | NC_006687 | GCGGT | 3 | 370402 | 370417 | 16 | 0.00% | 20.00% | 60.00% | 20.00% | 58267144 |
| 28. | NC_006687 | CGTCT | 3 | 399018 | 399032 | 15 | 0.00% | 40.00% | 20.00% | 40.00% | Non-Coding |
| 29. | NC_006687 | TTTTG | 3 | 412167 | 412182 | 16 | 0.00% | 80.00% | 20.00% | 0.00% | Non-Coding |
| 30. | NC_006687 | GCTTA | 3 | 422880 | 422893 | 14 | 20.00% | 40.00% | 20.00% | 20.00% | 58267222 |
| 31. | NC_006687 | CATTC | 3 | 435080 | 435099 | 20 | 20.00% | 40.00% | 0.00% | 40.00% | Non-Coding |
| 32. | NC_006687 | AGTTG | 3 | 469161 | 469174 | 14 | 20.00% | 40.00% | 40.00% | 0.00% | 58267264 |
| 33. | NC_006687 | CCCCT | 3 | 503987 | 504000 | 14 | 0.00% | 20.00% | 0.00% | 80.00% | Non-Coding |
| 34. | NC_006687 | ACGCA | 3 | 505694 | 505707 | 14 | 40.00% | 0.00% | 20.00% | 40.00% | 58267318 |
| 35. | NC_006687 | GGCCA | 3 | 518833 | 518846 | 14 | 20.00% | 0.00% | 40.00% | 40.00% | 58267344 |
| 36. | NC_006687 | GAAAT | 3 | 522217 | 522231 | 15 | 60.00% | 20.00% | 20.00% | 0.00% | Non-Coding |
| 37. | NC_006687 | GGCGG | 4 | 525930 | 525949 | 20 | 0.00% | 0.00% | 80.00% | 20.00% | 58267360 |
| 38. | NC_006687 | TGCGC | 3 | 550958 | 550973 | 16 | 0.00% | 20.00% | 40.00% | 40.00% | 58267416 |
| 39. | NC_006687 | TGAGC | 3 | 564058 | 564071 | 14 | 20.00% | 20.00% | 40.00% | 20.00% | 58267428 |
| 40. | NC_006687 | TTGAG | 3 | 565803 | 565818 | 16 | 20.00% | 40.00% | 40.00% | 0.00% | Non-Coding |
| 41. | NC_006687 | TCAAG | 3 | 582735 | 582748 | 14 | 40.00% | 20.00% | 20.00% | 20.00% | 58267450 |
| 42. | NC_006687 | CCTGC | 3 | 592042 | 592055 | 14 | 0.00% | 20.00% | 20.00% | 60.00% | Non-Coding |
| 43. | NC_006687 | CGCCC | 3 | 625979 | 625993 | 15 | 0.00% | 0.00% | 20.00% | 80.00% | Non-Coding |
| 44. | NC_006687 | AGTCC | 3 | 675204 | 675218 | 15 | 20.00% | 20.00% | 20.00% | 40.00% | 58267594 |
| 45. | NC_006687 | ATTGT | 3 | 676484 | 676498 | 15 | 20.00% | 60.00% | 20.00% | 0.00% | 58267594 |
| 46. | NC_006687 | CAGAA | 3 | 699231 | 699245 | 15 | 60.00% | 0.00% | 20.00% | 20.00% | 58267956 |
| 47. | NC_006687 | TTTTC | 3 | 735651 | 735664 | 14 | 0.00% | 80.00% | 0.00% | 20.00% | 58267662 |
| 48. | NC_006687 | ACCTC | 3 | 741011 | 741025 | 15 | 20.00% | 20.00% | 0.00% | 60.00% | 58267666 |
| 49. | NC_006687 | AACAC | 3 | 770735 | 770750 | 16 | 60.00% | 0.00% | 0.00% | 40.00% | Non-Coding |
| 50. | NC_006687 | ATAAA | 3 | 848848 | 848861 | 14 | 80.00% | 20.00% | 0.00% | 0.00% | Non-Coding |
| 51. | NC_006687 | GCTAC | 3 | 869185 | 869199 | 15 | 20.00% | 20.00% | 20.00% | 40.00% | Non-Coding |
| 52. | NC_006687 | AAAGC | 3 | 872397 | 872410 | 14 | 60.00% | 0.00% | 20.00% | 20.00% | 58267398 |
| 53. | NC_006687 | TGTCT | 3 | 894414 | 894427 | 14 | 0.00% | 60.00% | 20.00% | 20.00% | Non-Coding |
| 54. | NC_006687 | ACGCG | 3 | 948272 | 948286 | 15 | 20.00% | 0.00% | 40.00% | 40.00% | Non-Coding |
| 55. | NC_006687 | GGGAG | 3 | 964122 | 964135 | 14 | 20.00% | 0.00% | 80.00% | 0.00% | 58267498 |
| 56. | NC_006687 | GCGGG | 3 | 964939 | 964952 | 14 | 0.00% | 0.00% | 80.00% | 20.00% | 58267498 |
| 57. | NC_006687 | TTGCT | 3 | 969060 | 969074 | 15 | 0.00% | 60.00% | 20.00% | 20.00% | 58267502 |
| 58. | NC_006687 | ACGTG | 3 | 1024668 | 1024681 | 14 | 20.00% | 20.00% | 40.00% | 20.00% | 58267550 |
| 59. | NC_006687 | GAAAA | 3 | 1071714 | 1071728 | 15 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 60. | NC_006687 | GAAGA | 3 | 1114916 | 1114929 | 14 | 60.00% | 0.00% | 40.00% | 0.00% | Non-Coding |
| 61. | NC_006687 | AATAA | 4 | 1232458 | 1232478 | 21 | 80.00% | 20.00% | 0.00% | 0.00% | Non-Coding |
| 62. | NC_006687 | TGTAA | 3 | 1235912 | 1235926 | 15 | 40.00% | 40.00% | 20.00% | 0.00% | Non-Coding |
| 63. | NC_006687 | AAAAG | 3 | 1271158 | 1271171 | 14 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 64. | NC_006687 | TCTTT | 3 | 1279987 | 1280001 | 15 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 65. | NC_006687 | CTCGA | 3 | 1289887 | 1289900 | 14 | 20.00% | 20.00% | 20.00% | 40.00% | 58267994 |
| 66. | NC_006687 | TAGCA | 3 | 1307863 | 1307878 | 16 | 40.00% | 20.00% | 20.00% | 20.00% | Non-Coding |
| 67. | NC_006687 | GAAGA | 3 | 1312763 | 1312776 | 14 | 60.00% | 0.00% | 40.00% | 0.00% | Non-Coding |
| 68. | NC_006687 | TTCCT | 3 | 1358887 | 1358902 | 16 | 0.00% | 60.00% | 0.00% | 40.00% | 58268046 |
| 69. | NC_006687 | ACCGG | 3 | 1371574 | 1371588 | 15 | 20.00% | 0.00% | 40.00% | 40.00% | Non-Coding |
| 70. | NC_006687 | AGGGA | 4 | 1384163 | 1384182 | 20 | 40.00% | 0.00% | 60.00% | 0.00% | 58267724 |
| 71. | NC_006687 | GGGGA | 3 | 1388083 | 1388097 | 15 | 20.00% | 0.00% | 80.00% | 0.00% | Non-Coding |
| 72. | NC_006687 | CGTTT | 4 | 1393708 | 1393727 | 20 | 0.00% | 60.00% | 20.00% | 20.00% | Non-Coding |
| 73. | NC_006687 | TGCAA | 3 | 1410876 | 1410891 | 16 | 40.00% | 20.00% | 20.00% | 20.00% | Non-Coding |
| 74. | NC_006687 | ATGCA | 4 | 1421180 | 1421199 | 20 | 40.00% | 20.00% | 20.00% | 20.00% | Non-Coding |
| 75. | NC_006687 | TCCTC | 3 | 1503098 | 1503111 | 14 | 0.00% | 40.00% | 0.00% | 60.00% | Non-Coding |
| 76. | NC_006687 | TCCTC | 3 | 1503494 | 1503507 | 14 | 0.00% | 40.00% | 0.00% | 60.00% | Non-Coding |