List of
Perfect Tetra
-nucleotide repeats in Cryptococcus neoformans var. neoformans JEC21
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NC_006685 | AAAC | 3 | 10675 | 10686 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 2. | NC_006685 | CCTG | 3 | 57788 | 57799 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 3. | NC_006685 | GAAA | 3 | 63920 | 63931 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 58264472 |
| 4. | NC_006685 | TGCA | 3 | 82028 | 82039 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 5. | NC_006685 | TCAT | 3 | 104386 | 104397 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 6. | NC_006685 | ACAT | 3 | 132371 | 132382 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 7. | NC_006685 | ATGG | 3 | 149850 | 149861 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 8. | NC_006685 | ATGT | 3 | 164033 | 164044 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | 58264382 |
| 9. | NC_006685 | CCTT | 3 | 166053 | 166064 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 10. | NC_006685 | TTTC | 3 | 188377 | 188388 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 58264400 |
| 11. | NC_006685 | ACAA | 3 | 219887 | 219898 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | 58264444 |
| 12. | NC_006685 | CATC | 3 | 249973 | 249984 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 13. | NC_006685 | ATAG | 3 | 253197 | 253208 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 14. | NC_006685 | TAAA | 3 | 257102 | 257113 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 15. | NC_006685 | AGGA | 3 | 281584 | 281595 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 16. | NC_006685 | CTCC | 3 | 313715 | 313726 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | Non-Coding |
| 17. | NC_006685 | GAAG | 3 | 324716 | 324727 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 18. | NC_006685 | GATG | 3 | 369388 | 369399 | 12 | 25.00% | 25.00% | 50.00% | 0.00% | 58265612 |
| 19. | NC_006685 | GGTG | 3 | 388657 | 388668 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | Non-Coding |
| 20. | NC_006685 | TTCC | 3 | 403232 | 403243 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 21. | NC_006685 | CATT | 3 | 471793 | 471804 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 22. | NC_006685 | CGCA | 3 | 482423 | 482434 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | Non-Coding |
| 23. | NC_006685 | CTTC | 3 | 498797 | 498808 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 58264766 |
| 24. | NC_006685 | TCCG | 3 | 528816 | 528827 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 25. | NC_006685 | TCAG | 3 | 530575 | 530586 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 26. | NC_006685 | CCTC | 3 | 535764 | 535775 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 58264576 |
| 27. | NC_006685 | GAAG | 3 | 538268 | 538279 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 28. | NC_006685 | ATCT | 3 | 551160 | 551171 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | 58264598 |
| 29. | NC_006685 | TCAT | 3 | 560636 | 560647 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 30. | NC_006685 | ACAA | 3 | 573875 | 573886 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 31. | NC_006685 | AGGA | 3 | 655447 | 655458 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 32. | NC_006685 | TGTC | 3 | 726736 | 726747 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 33. | NC_006685 | GAAT | 3 | 726764 | 726775 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 34. | NC_006685 | TGAT | 3 | 751293 | 751304 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 35. | NC_006685 | TATT | 3 | 791898 | 791909 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 36. | NC_006685 | TGAT | 3 | 792513 | 792524 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 37. | NC_006685 | AAAG | 3 | 800559 | 800570 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 58264836 |
| 38. | NC_006685 | TGGT | 3 | 808592 | 808603 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | Non-Coding |
| 39. | NC_006685 | TATG | 3 | 895711 | 895722 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 40. | NC_006685 | TTTA | 3 | 899087 | 899098 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 41. | NC_006685 | CAGA | 3 | 913949 | 913960 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 42. | NC_006685 | TATG | 3 | 945552 | 945563 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 43. | NC_006685 | TCCT | 3 | 962947 | 962958 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 44. | NC_006685 | TAAA | 3 | 972860 | 972871 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | 58264896 |
| 45. | NC_006685 | TCTT | 3 | 981858 | 981869 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 46. | NC_006685 | GAAA | 3 | 1001504 | 1001515 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 47. | NC_006685 | AATT | 3 | 1016051 | 1016062 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | 58265676 |
| 48. | NC_006685 | GTTG | 3 | 1017788 | 1017799 | 12 | 0.00% | 50.00% | 50.00% | 0.00% | 58265676 |
| 49. | NC_006685 | TGCA | 3 | 1071172 | 1071183 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 50. | NC_006685 | ATGA | 3 | 1084363 | 1084374 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 51. | NC_006685 | GGGT | 3 | 1093746 | 1093757 | 12 | 0.00% | 25.00% | 75.00% | 0.00% | 58265040 |
| 52. | NC_006685 | CAAA | 3 | 1137977 | 1137988 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | 58265074 |
| 53. | NC_006685 | CCAT | 3 | 1152837 | 1152848 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 54. | NC_006685 | AAAC | 3 | 1174134 | 1174145 | 12 | 75.00% | 0.00% | 0.00% | 25.00% | Non-Coding |
| 55. | NC_006685 | ATTG | 3 | 1177455 | 1177466 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | 58264898 |
| 56. | NC_006685 | TCAT | 3 | 1228951 | 1228962 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 57. | NC_006685 | TCGG | 3 | 1240389 | 1240400 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 58. | NC_006685 | ACTG | 3 | 1296701 | 1296712 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | 58265046 |
| 59. | NC_006685 | CTTC | 4 | 1301932 | 1301947 | 16 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 60. | NC_006685 | AATG | 3 | 1328633 | 1328644 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | 58265718 |
| 61. | NC_006685 | TCCG | 3 | 1382983 | 1382994 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 62. | NC_006685 | TCCA | 3 | 1403274 | 1403285 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 63. | NC_006685 | TAAA | 3 | 1445975 | 1445986 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 64. | NC_006685 | TGAT | 3 | 1452649 | 1452660 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | Non-Coding |
| 65. | NC_006685 | TTAA | 3 | 1455032 | 1455043 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 66. | NC_006685 | GAAA | 3 | 1502985 | 1502996 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 58265262 |
| 67. | NC_006685 | AAGC | 3 | 1513094 | 1513105 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 58265278 |
| 68. | NC_006685 | CTTT | 6 | 1527609 | 1527632 | 24 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 69. | NC_006685 | TCAG | 3 | 1538471 | 1538482 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 70. | NC_006685 | GCCC | 3 | 1538844 | 1538855 | 12 | 0.00% | 0.00% | 25.00% | 75.00% | Non-Coding |
| 71. | NC_006685 | AGAA | 3 | 1550373 | 1550384 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 58265416 |
| 72. | NC_006685 | GAAT | 3 | 1573262 | 1573273 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 73. | NC_006685 | GCAT | 3 | 1583094 | 1583105 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 74. | NC_006685 | TTAC | 3 | 1585436 | 1585447 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 75. | NC_006685 | TCGT | 3 | 1590084 | 1590095 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 76. | NC_006685 | TTCT | 3 | 1613908 | 1613919 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 58265168 |
| 77. | NC_006685 | GCAA | 3 | 1621590 | 1621601 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 58265176 |
| 78. | NC_006685 | ATTC | 4 | 1624758 | 1624773 | 16 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 79. | NC_006685 | AGGA | 4 | 1632772 | 1632787 | 16 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 80. | NC_006685 | CTTC | 3 | 1664522 | 1664533 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 81. | NC_006685 | CCTT | 3 | 1667306 | 1667317 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 58265226 |
| 82. | NC_006685 | CTTT | 3 | 1669256 | 1669267 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 58265226 |
| 83. | NC_006685 | GACC | 3 | 1681970 | 1681981 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | 58265254 |
| 84. | NC_006685 | TCAA | 3 | 1698409 | 1698420 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 85. | NC_006685 | GCTT | 3 | 1709099 | 1709110 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 86. | NC_006685 | CCGG | 3 | 1742624 | 1742635 | 12 | 0.00% | 0.00% | 50.00% | 50.00% | 58265312 |
| 87. | NC_006685 | TGCT | 3 | 1767912 | 1767923 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 88. | NC_006685 | GGGC | 3 | 1803568 | 1803579 | 12 | 0.00% | 0.00% | 75.00% | 25.00% | 58265442 |
| 89. | NC_006685 | TCCT | 3 | 1893916 | 1893927 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 58265496 |
| 90. | NC_006685 | TTCC | 3 | 1920417 | 1920428 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 91. | NC_006685 | GTAC | 3 | 1936052 | 1936063 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 92. | NC_006685 | GAAA | 3 | 1938153 | 1938164 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 58265792 |
| 93. | NC_006685 | TTTC | 3 | 1939655 | 1939666 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 94. | NC_006685 | TCTT | 3 | 1943744 | 1943755 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | 58265584 |
| 95. | NC_006685 | GCGA | 3 | 2002036 | 2002047 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 96. | NC_006685 | TTTC | 3 | 2002128 | 2002139 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 97. | NC_006685 | GAAG | 3 | 2007289 | 2007300 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 98. | NC_006685 | AGAA | 3 | 2023677 | 2023688 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | 58265340 |
| 99. | NC_006685 | TTCC | 3 | 2048943 | 2048954 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 100. | NC_006685 | CTTC | 3 | 2054523 | 2054534 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 58265396 |
| 101. | NC_006685 | ATCC | 3 | 2061088 | 2061099 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 102. | NC_006685 | TCCC | 3 | 2073769 | 2073780 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 58265354 |
| 103. | NC_006685 | TCCC | 3 | 2085958 | 2085969 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 58265360 |