List of
Perfect Tetra
-nucleotide repeats in Cryptococcus neoformans var. neoformans JEC21
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NC_006680 | CGGT | 3 | 8238 | 8249 | 12 | 0.00% | 25.00% | 50.00% | 25.00% | Non-Coding |
| 2. | NC_006680 | AGCG | 3 | 39672 | 39683 | 12 | 25.00% | 0.00% | 50.00% | 25.00% | 58260742 |
| 3. | NC_006680 | TAAA | 3 | 40121 | 40132 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 4. | NC_006680 | ATTT | 3 | 60653 | 60664 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | 58260362 |
| 5. | NC_006680 | GGGA | 3 | 62764 | 62775 | 12 | 25.00% | 0.00% | 75.00% | 0.00% | Non-Coding |
| 6. | NC_006680 | ATAA | 3 | 97393 | 97404 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 7. | NC_006680 | TATC | 3 | 99310 | 99321 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 8. | NC_006680 | CATG | 3 | 99471 | 99482 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 9. | NC_006680 | CATA | 3 | 172203 | 172214 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 10. | NC_006680 | CAGA | 37 | 174695 | 174842 | 148 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 11. | NC_006680 | ACCG | 3 | 199640 | 199651 | 12 | 25.00% | 0.00% | 25.00% | 50.00% | 58260428 |
| 12. | NC_006680 | AGAA | 3 | 216868 | 216879 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 13. | NC_006680 | TCGT | 3 | 227887 | 227898 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | Non-Coding |
| 14. | NC_006680 | TTGA | 3 | 252646 | 252657 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | 58260464 |
| 15. | NC_006680 | ACTC | 3 | 272594 | 272605 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 16. | NC_006680 | CTCC | 3 | 290371 | 290382 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 58260490 |
| 17. | NC_006680 | ATAA | 4 | 301448 | 301463 | 16 | 75.00% | 25.00% | 0.00% | 0.00% | 58260748 |
| 18. | NC_006680 | ACCT | 3 | 313408 | 313419 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | 58260760 |
| 19. | NC_006680 | TAAT | 3 | 358550 | 358561 | 12 | 50.00% | 50.00% | 0.00% | 0.00% | Non-Coding |
| 20. | NC_006680 | ACTA | 3 | 365063 | 365074 | 12 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 21. | NC_006680 | CTTC | 3 | 388235 | 388246 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 22. | NC_006680 | CTTC | 5 | 388414 | 388433 | 20 | 0.00% | 50.00% | 0.00% | 50.00% | 58260800 |
| 23. | NC_006680 | CTTC | 3 | 395024 | 395035 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 24. | NC_006680 | AGGA | 3 | 400640 | 400651 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | 58260808 |
| 25. | NC_006680 | CAGA | 3 | 444718 | 444729 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 58260660 |
| 26. | NC_006680 | GAAC | 3 | 477656 | 477667 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 27. | NC_006680 | TCCT | 7 | 486744 | 486771 | 28 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 28. | NC_006680 | CTTC | 3 | 487158 | 487169 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | 58260862 |
| 29. | NC_006680 | CTCG | 3 | 496084 | 496095 | 12 | 0.00% | 25.00% | 25.00% | 50.00% | 58260866 |
| 30. | NC_006680 | GACG | 4 | 503131 | 503146 | 16 | 25.00% | 0.00% | 50.00% | 25.00% | Non-Coding |
| 31. | NC_006680 | ATAA | 3 | 525009 | 525020 | 12 | 75.00% | 25.00% | 0.00% | 0.00% | Non-Coding |
| 32. | NC_006680 | CATA | 4 | 527548 | 527563 | 16 | 50.00% | 25.00% | 0.00% | 25.00% | Non-Coding |
| 33. | NC_006680 | CAAG | 3 | 551777 | 551788 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | 58260512 |
| 34. | NC_006680 | TTAT | 3 | 590145 | 590156 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 35. | NC_006680 | AGGA | 3 | 620150 | 620161 | 12 | 50.00% | 0.00% | 50.00% | 0.00% | 58260544 |
| 36. | NC_006680 | TGCT | 3 | 638798 | 638809 | 12 | 0.00% | 50.00% | 25.00% | 25.00% | 58260560 |
| 37. | NC_006680 | TTCT | 3 | 695726 | 695737 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |
| 38. | NC_006680 | TTAT | 3 | 729737 | 729748 | 12 | 25.00% | 75.00% | 0.00% | 0.00% | Non-Coding |
| 39. | NC_006680 | CTTC | 4 | 749595 | 749610 | 16 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 40. | NC_006680 | CTTC | 3 | 761525 | 761536 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 41. | NC_006680 | AACG | 3 | 764443 | 764454 | 12 | 50.00% | 0.00% | 25.00% | 25.00% | Non-Coding |
| 42. | NC_006680 | CGTA | 3 | 774076 | 774087 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 43. | NC_006680 | TTCA | 3 | 844334 | 844345 | 12 | 25.00% | 50.00% | 0.00% | 25.00% | Non-Coding |
| 44. | NC_006680 | TAGA | 3 | 848058 | 848069 | 12 | 50.00% | 25.00% | 25.00% | 0.00% | Non-Coding |
| 45. | NC_006680 | TTCC | 3 | 889787 | 889798 | 12 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 46. | NC_006680 | ATCC | 3 | 925262 | 925273 | 12 | 25.00% | 25.00% | 0.00% | 50.00% | Non-Coding |
| 47. | NC_006680 | CTCC | 3 | 926274 | 926285 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 58260990 |
| 48. | NC_006680 | CAGT | 3 | 929118 | 929129 | 12 | 25.00% | 25.00% | 25.00% | 25.00% | Non-Coding |
| 49. | NC_006680 | AAGA | 3 | 931945 | 931956 | 12 | 75.00% | 0.00% | 25.00% | 0.00% | Non-Coding |
| 50. | NC_006680 | CTCG | 4 | 941720 | 941735 | 16 | 0.00% | 25.00% | 25.00% | 50.00% | Non-Coding |
| 51. | NC_006680 | GGAT | 4 | 980101 | 980116 | 16 | 25.00% | 25.00% | 50.00% | 0.00% | Non-Coding |
| 52. | NC_006680 | GATT | 3 | 981436 | 981447 | 12 | 25.00% | 50.00% | 25.00% | 0.00% | 58261014 |
| 53. | NC_006680 | CTCC | 3 | 986391 | 986402 | 12 | 0.00% | 25.00% | 0.00% | 75.00% | 58261018 |
| 54. | NC_006680 | TCTT | 3 | 999918 | 999929 | 12 | 0.00% | 75.00% | 0.00% | 25.00% | Non-Coding |