MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Yersinia pestis CO92 chromosome

Total Repeats: 19685

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S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
19501	NC_003143	GCAA	2	8	4608153	4608160	50 %	0 %	25 %	25 %	Non-Coding
19502	NC_003143	CAC	2	6	4608220	4608225	33.33 %	0 %	0 %	66.67 %	Non-Coding
19503	NC_003143	C	6	6	4608316	4608321	0 %	0 %	0 %	100 %	Non-Coding
19504	NC_003143	CAT	2	6	4608333	4608338	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19505	NC_003143	GCT	2	6	4608411	4608416	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
19506	NC_003143	T	7	7	4608434	4608440	0 %	100 %	0 %	0 %	Non-Coding
19507	NC_003143	T	6	6	4608503	4608508	0 %	100 %	0 %	0 %	Non-Coding
19508	NC_003143	AC	3	6	4608531	4608536	50 %	0 %	0 %	50 %	Non-Coding
19509	NC_003143	AAT	2	6	4608572	4608577	66.67 %	33.33 %	0 %	0 %	Non-Coding
19510	NC_003143	AGC	2	6	4608591	4608596	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19511	NC_003143	GC	3	6	4608599	4608604	0 %	0 %	50 %	50 %	Non-Coding
19512	NC_003143	AT	3	6	4608626	4608631	50 %	50 %	0 %	0 %	Non-Coding
19513	NC_003143	AAAAT	2	10	4608634	4608643	80 %	20 %	0 %	0 %	Non-Coding
19514	NC_003143	TGG	2	6	4610606	4610611	0 %	33.33 %	66.67 %	0 %	Non-Coding
19515	NC_003143	TGG	2	6	4610614	4610619	0 %	33.33 %	66.67 %	0 %	Non-Coding
19516	NC_003143	CAG	2	6	4611302	4611307	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19517	NC_003143	TG	3	6	4611329	4611334	0 %	50 %	50 %	0 %	Non-Coding
19518	NC_003143	TCA	2	6	4612227	4612232	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19519	NC_003143	CTCG	2	8	4612277	4612284	0 %	25 %	25 %	50 %	Non-Coding
19520	NC_003143	TTC	2	6	4612312	4612317	0 %	66.67 %	0 %	33.33 %	Non-Coding
19521	NC_003143	GCT	2	6	4612323	4612328	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
19522	NC_003143	CAA	2	6	4612347	4612352	66.67 %	0 %	0 %	33.33 %	Non-Coding
19523	NC_003143	TCAAAA	2	12	4612358	4612369	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19524	NC_003143	GAT	2	6	4612388	4612393	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
19525	NC_003143	CCT	2	6	4612406	4612411	0 %	33.33 %	0 %	66.67 %	Non-Coding
19526	NC_003143	GAC	2	6	4612422	4612427	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19527	NC_003143	ATAA	2	8	4612498	4612505	75 %	25 %	0 %	0 %	Non-Coding
19528	NC_003143	A	6	6	4612504	4612509	100 %	0 %	0 %	0 %	Non-Coding
19529	NC_003143	CA	3	6	4613377	4613382	50 %	0 %	0 %	50 %	Non-Coding
19530	NC_003143	TCA	2	6	4613443	4613448	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19531	NC_003143	TAACAA	2	12	4613451	4613462	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19532	NC_003143	A	8	8	4613472	4613479	100 %	0 %	0 %	0 %	Non-Coding
19533	NC_003143	T	6	6	4613508	4613513	0 %	100 %	0 %	0 %	Non-Coding
19534	NC_003143	TCG	2	6	4617120	4617125	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
19535	NC_003143	TGCG	2	8	4617135	4617142	0 %	25 %	50 %	25 %	Non-Coding
19536	NC_003143	GC	3	6	4617147	4617152	0 %	0 %	50 %	50 %	Non-Coding
19537	NC_003143	GCAA	2	8	4617212	4617219	50 %	0 %	25 %	25 %	Non-Coding
19538	NC_003143	AGAA	2	8	4619760	4619767	75 %	0 %	25 %	0 %	Non-Coding
19539	NC_003143	AC	3	6	4619797	4619802	50 %	0 %	0 %	50 %	Non-Coding
19540	NC_003143	T	6	6	4619843	4619848	0 %	100 %	0 %	0 %	Non-Coding
19541	NC_003143	TCCCCT	2	12	4620084	4620095	0 %	33.33 %	0 %	66.67 %	Non-Coding
19542	NC_003143	AATAGC	2	12	4620205	4620216	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
19543	NC_003143	CAG	2	6	4620228	4620233	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19544	NC_003143	GCAG	2	8	4620243	4620250	25 %	0 %	50 %	25 %	Non-Coding
19545	NC_003143	ATT	2	6	4620323	4620328	33.33 %	66.67 %	0 %	0 %	Non-Coding
19546	NC_003143	CTT	2	6	4620338	4620343	0 %	66.67 %	0 %	33.33 %	Non-Coding
19547	NC_003143	AGC	2	6	4620382	4620387	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19548	NC_003143	ATT	2	6	4620411	4620416	33.33 %	66.67 %	0 %	0 %	Non-Coding
19549	NC_003143	GGT	2	6	4621128	4621133	0 %	33.33 %	66.67 %	0 %	Non-Coding
19550	NC_003143	GCC	2	6	4621145	4621150	0 %	0 %	33.33 %	66.67 %	Non-Coding
19551	NC_003143	CGA	2	6	4621157	4621162	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19552	NC_003143	ATA	2	6	4622917	4622922	66.67 %	33.33 %	0 %	0 %	Non-Coding
19553	NC_003143	AAT	2	6	4622938	4622943	66.67 %	33.33 %	0 %	0 %	Non-Coding
19554	NC_003143	AG	3	6	4622950	4622955	50 %	0 %	50 %	0 %	Non-Coding
19555	NC_003143	AAT	2	6	4624426	4624431	66.67 %	33.33 %	0 %	0 %	Non-Coding
19556	NC_003143	CTG	2	6	4625737	4625742	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
19557	NC_003143	GCA	2	6	4625755	4625760	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19558	NC_003143	ATC	2	6	4625766	4625771	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19559	NC_003143	ATT	2	6	4625826	4625831	33.33 %	66.67 %	0 %	0 %	Non-Coding
19560	NC_003143	GCAA	2	8	4625856	4625863	50 %	0 %	25 %	25 %	Non-Coding
19561	NC_003143	ATT	2	6	4625938	4625943	33.33 %	66.67 %	0 %	0 %	Non-Coding
19562	NC_003143	AACA	2	8	4625944	4625951	75 %	0 %	0 %	25 %	Non-Coding
19563	NC_003143	TAA	2	6	4626012	4626017	66.67 %	33.33 %	0 %	0 %	Non-Coding
19564	NC_003143	AGT	2	6	4626028	4626033	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
19565	NC_003143	ACCATA	2	12	4626085	4626096	50 %	16.67 %	0 %	33.33 %	Non-Coding
19566	NC_003143	ATTA	2	8	4626098	4626105	50 %	50 %	0 %	0 %	Non-Coding
19567	NC_003143	ATT	3	9	4626136	4626144	33.33 %	66.67 %	0 %	0 %	Non-Coding
19568	NC_003143	AAC	2	6	4626145	4626150	66.67 %	0 %	0 %	33.33 %	Non-Coding
19569	NC_003143	ATT	2	6	4626154	4626159	33.33 %	66.67 %	0 %	0 %	Non-Coding
19570	NC_003143	AT	3	6	4626167	4626172	50 %	50 %	0 %	0 %	Non-Coding
19571	NC_003143	ATTT	2	8	4627156	4627163	25 %	75 %	0 %	0 %	Non-Coding
19572	NC_003143	T	6	6	4627161	4627166	0 %	100 %	0 %	0 %	Non-Coding
19573	NC_003143	AT	3	6	4627194	4627199	50 %	50 %	0 %	0 %	Non-Coding
19574	NC_003143	A	6	6	4627220	4627225	100 %	0 %	0 %	0 %	Non-Coding
19575	NC_003143	GAT	2	6	4627300	4627305	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
19576	NC_003143	TAT	2	6	4627337	4627342	33.33 %	66.67 %	0 %	0 %	Non-Coding
19577	NC_003143	AGCAT	2	10	4627369	4627378	40 %	20 %	20 %	20 %	Non-Coding
19578	NC_003143	TAT	2	6	4627383	4627388	33.33 %	66.67 %	0 %	0 %	Non-Coding
19579	NC_003143	ACCAC	2	10	4627429	4627438	40 %	0 %	0 %	60 %	Non-Coding
19580	NC_003143	TAAA	2	8	4627471	4627478	75 %	25 %	0 %	0 %	Non-Coding
19581	NC_003143	ATCT	2	8	4627538	4627545	25 %	50 %	0 %	25 %	Non-Coding
19582	NC_003143	CAA	2	6	4627547	4627552	66.67 %	0 %	0 %	33.33 %	Non-Coding
19583	NC_003143	ATT	2	6	4627585	4627590	33.33 %	66.67 %	0 %	0 %	Non-Coding
19584	NC_003143	TTA	2	6	4627608	4627613	33.33 %	66.67 %	0 %	0 %	Non-Coding
19585	NC_003143	T	6	6	4627652	4627657	0 %	100 %	0 %	0 %	Non-Coding
19586	NC_003143	T	6	6	4629098	4629103	0 %	100 %	0 %	0 %	Non-Coding
19587	NC_003143	T	6	6	4629109	4629114	0 %	100 %	0 %	0 %	Non-Coding
19588	NC_003143	TCA	2	6	4629205	4629210	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19589	NC_003143	AAG	3	9	4629228	4629236	66.67 %	0 %	33.33 %	0 %	Non-Coding
19590	NC_003143	CTG	2	6	4629245	4629250	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
19591	NC_003143	TC	3	6	4629373	4629378	0 %	50 %	0 %	50 %	Non-Coding
19592	NC_003143	TTA	2	6	4629418	4629423	33.33 %	66.67 %	0 %	0 %	Non-Coding
19593	NC_003143	TAA	2	6	4629433	4629438	66.67 %	33.33 %	0 %	0 %	Non-Coding
19594	NC_003143	TTTA	2	8	4629446	4629453	25 %	75 %	0 %	0 %	Non-Coding
19595	NC_003143	T	6	6	4629490	4629495	0 %	100 %	0 %	0 %	Non-Coding
19596	NC_003143	GCCT	2	8	4630197	4630204	0 %	25 %	25 %	50 %	Non-Coding
19597	NC_003143	TATATC	2	12	4631715	4631726	33.33 %	50 %	0 %	16.67 %	Non-Coding
19598	NC_003143	ATA	2	6	4632813	4632818	66.67 %	33.33 %	0 %	0 %	Non-Coding
19599	NC_003143	AT	3	6	4632943	4632948	50 %	50 %	0 %	0 %	Non-Coding
19600	NC_003143	A	6	6	4633659	4633664	100 %	0 %	0 %	0 %	Non-Coding
19601	NC_003143	ATT	2	6	4633673	4633678	33.33 %	66.67 %	0 %	0 %	Non-Coding
19602	NC_003143	AATA	2	8	4633682	4633689	75 %	25 %	0 %	0 %	Non-Coding
19603	NC_003143	A	6	6	4633701	4633706	100 %	0 %	0 %	0 %	Non-Coding
19604	NC_003143	TAA	2	6	4633753	4633758	66.67 %	33.33 %	0 %	0 %	Non-Coding
19605	NC_003143	AAAT	2	8	4633759	4633766	75 %	25 %	0 %	0 %	Non-Coding
19606	NC_003143	TAAAA	2	10	4633770	4633779	80 %	20 %	0 %	0 %	Non-Coding
19607	NC_003143	A	6	6	4633776	4633781	100 %	0 %	0 %	0 %	Non-Coding
19608	NC_003143	AG	3	6	4633827	4633832	50 %	0 %	50 %	0 %	Non-Coding
19609	NC_003143	AT	3	6	4633836	4633841	50 %	50 %	0 %	0 %	Non-Coding
19610	NC_003143	AAT	2	6	4633842	4633847	66.67 %	33.33 %	0 %	0 %	Non-Coding
19611	NC_003143	TTA	2	6	4633868	4633873	33.33 %	66.67 %	0 %	0 %	Non-Coding
19612	NC_003143	A	7	7	4633890	4633896	100 %	0 %	0 %	0 %	Non-Coding
19613	NC_003143	CGTA	2	8	4634663	4634670	25 %	25 %	25 %	25 %	Non-Coding
19614	NC_003143	AATG	2	8	4634697	4634704	50 %	25 %	25 %	0 %	Non-Coding
19615	NC_003143	TAA	2	6	4634730	4634735	66.67 %	33.33 %	0 %	0 %	Non-Coding
19616	NC_003143	TC	3	6	4635525	4635530	0 %	50 %	0 %	50 %	Non-Coding
19617	NC_003143	CCG	2	6	4635543	4635548	0 %	0 %	33.33 %	66.67 %	Non-Coding
19618	NC_003143	T	6	6	4635583	4635588	0 %	100 %	0 %	0 %	Non-Coding
19619	NC_003143	CGC	2	6	4637485	4637490	0 %	0 %	33.33 %	66.67 %	Non-Coding
19620	NC_003143	CA	3	6	4637509	4637514	50 %	0 %	0 %	50 %	Non-Coding
19621	NC_003143	TGC	2	6	4637595	4637600	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
19622	NC_003143	TAT	2	6	4637627	4637632	33.33 %	66.67 %	0 %	0 %	Non-Coding
19623	NC_003143	TTG	2	6	4637658	4637663	0 %	66.67 %	33.33 %	0 %	Non-Coding
19624	NC_003143	CCT	2	6	4638717	4638722	0 %	33.33 %	0 %	66.67 %	Non-Coding
19625	NC_003143	GAAT	2	8	4638780	4638787	50 %	25 %	25 %	0 %	Non-Coding
19626	NC_003143	G	6	6	4638817	4638822	0 %	0 %	100 %	0 %	Non-Coding
19627	NC_003143	AAC	2	6	4638832	4638837	66.67 %	0 %	0 %	33.33 %	Non-Coding
19628	NC_003143	TCA	2	6	4638873	4638878	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19629	NC_003143	AGG	2	6	4638894	4638899	33.33 %	0 %	66.67 %	0 %	Non-Coding
19630	NC_003143	ATT	2	6	4638936	4638941	33.33 %	66.67 %	0 %	0 %	Non-Coding
19631	NC_003143	TTAT	2	8	4638978	4638985	25 %	75 %	0 %	0 %	Non-Coding
19632	NC_003143	TTA	2	6	4639001	4639006	33.33 %	66.67 %	0 %	0 %	Non-Coding
19633	NC_003143	T	6	6	4639015	4639020	0 %	100 %	0 %	0 %	Non-Coding
19634	NC_003143	A	6	6	4639035	4639040	100 %	0 %	0 %	0 %	Non-Coding
19635	NC_003143	A	7	7	4639068	4639074	100 %	0 %	0 %	0 %	Non-Coding
19636	NC_003143	TAA	2	6	4639096	4639101	66.67 %	33.33 %	0 %	0 %	Non-Coding
19637	NC_003143	ATT	2	6	4639105	4639110	33.33 %	66.67 %	0 %	0 %	Non-Coding
19638	NC_003143	A	6	6	4639124	4639129	100 %	0 %	0 %	0 %	Non-Coding
19639	NC_003143	TTA	2	6	4641050	4641055	33.33 %	66.67 %	0 %	0 %	Non-Coding
19640	NC_003143	TGAT	2	8	4641079	4641086	25 %	50 %	25 %	0 %	Non-Coding
19641	NC_003143	ATT	2	6	4641125	4641130	33.33 %	66.67 %	0 %	0 %	Non-Coding
19642	NC_003143	AAG	2	6	4641186	4641191	66.67 %	0 %	33.33 %	0 %	Non-Coding
19643	NC_003143	TAA	2	6	4641217	4641222	66.67 %	33.33 %	0 %	0 %	Non-Coding
19644	NC_003143	TAC	2	6	4642653	4642658	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19645	NC_003143	A	6	6	4642726	4642731	100 %	0 %	0 %	0 %	Non-Coding
19646	NC_003143	A	6	6	4642737	4642742	100 %	0 %	0 %	0 %	Non-Coding
19647	NC_003143	T	6	6	4642762	4642767	0 %	100 %	0 %	0 %	Non-Coding
19648	NC_003143	T	7	7	4642772	4642778	0 %	100 %	0 %	0 %	Non-Coding
19649	NC_003143	TAA	2	6	4642805	4642810	66.67 %	33.33 %	0 %	0 %	Non-Coding
19650	NC_003143	GAAA	2	8	4642845	4642852	75 %	0 %	25 %	0 %	Non-Coding
19651	NC_003143	CAT	2	6	4642900	4642905	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19652	NC_003143	AT	3	6	4642904	4642909	50 %	50 %	0 %	0 %	Non-Coding
19653	NC_003143	AAC	2	6	4642939	4642944	66.67 %	0 %	0 %	33.33 %	Non-Coding
19654	NC_003143	GGT	2	6	4643046	4643051	0 %	33.33 %	66.67 %	0 %	Non-Coding
19655	NC_003143	A	6	6	4643061	4643066	100 %	0 %	0 %	0 %	Non-Coding
19656	NC_003143	CAGT	2	8	4643070	4643077	25 %	25 %	25 %	25 %	Non-Coding
19657	NC_003143	TAA	2	6	4643106	4643111	66.67 %	33.33 %	0 %	0 %	Non-Coding
19658	NC_003143	TATC	2	8	4643159	4643166	25 %	50 %	0 %	25 %	Non-Coding
19659	NC_003143	AGAT	2	8	4643188	4643195	50 %	25 %	25 %	0 %	Non-Coding
19660	NC_003143	CGA	2	6	4645116	4645121	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19661	NC_003143	TAA	2	6	4645187	4645192	66.67 %	33.33 %	0 %	0 %	Non-Coding
19662	NC_003143	CTCC	2	8	4648219	4648226	0 %	25 %	0 %	75 %	Non-Coding
19663	NC_003143	AGT	2	6	4649030	4649035	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
19664	NC_003143	TTG	2	6	4649887	4649892	0 %	66.67 %	33.33 %	0 %	Non-Coding
19665	NC_003143	TC	3	6	4650305	4650310	0 %	50 %	0 %	50 %	Non-Coding
19666	NC_003143	TGAG	2	8	4650331	4650338	25 %	25 %	50 %	0 %	Non-Coding
19667	NC_003143	AGC	2	6	4650369	4650374	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19668	NC_003143	ATT	2	6	4650441	4650446	33.33 %	66.67 %	0 %	0 %	Non-Coding
19669	NC_003143	AAT	2	6	4650523	4650528	66.67 %	33.33 %	0 %	0 %	Non-Coding
19670	NC_003143	ATAA	2	8	4650555	4650562	75 %	25 %	0 %	0 %	Non-Coding
19671	NC_003143	AAC	2	6	4650665	4650670	66.67 %	0 %	0 %	33.33 %	Non-Coding
19672	NC_003143	ATA	2	6	4650708	4650713	66.67 %	33.33 %	0 %	0 %	Non-Coding
19673	NC_003143	CCAA	2	8	4650751	4650758	50 %	0 %	0 %	50 %	Non-Coding
19674	NC_003143	ATT	2	6	4650776	4650781	33.33 %	66.67 %	0 %	0 %	Non-Coding
19675	NC_003143	ACT	2	6	4650784	4650789	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19676	NC_003143	T	7	7	4650819	4650825	0 %	100 %	0 %	0 %	Non-Coding
19677	NC_003143	A	8	8	4650828	4650835	100 %	0 %	0 %	0 %	Non-Coding
19678	NC_003143	AAT	2	6	4650843	4650848	66.67 %	33.33 %	0 %	0 %	Non-Coding
19679	NC_003143	ACA	2	6	4650857	4650862	66.67 %	0 %	0 %	33.33 %	Non-Coding
19680	NC_003143	ACT	2	6	4650921	4650926	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19681	NC_003143	AAT	2	6	4650927	4650932	66.67 %	33.33 %	0 %	0 %	Non-Coding
19682	NC_003143	TTG	2	6	4650933	4650938	0 %	66.67 %	33.33 %	0 %	Non-Coding
19683	NC_003143	T	7	7	4650941	4650947	0 %	100 %	0 %	0 %	Non-Coding
19684	NC_003143	TGGGG	2	10	4653659	4653668	0 %	20 %	80 %	0 %	Non-Coding
19685	NC_003143	TTAA	2	8	4653716	4653723	50 %	50 %	0 %	0 %	Non-Coding

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©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.