MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Thermus thermophilus SG0.5JP17-16 chromosome

Total Repeats: 2659

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S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
2501	NC_017272	GCAAG	2	10	1717367	1717376	40 %	0 %	40 %	20 %	Non-Coding
2502	NC_017272	AGC	2	6	1717436	1717441	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
2503	NC_017272	TCG	2	6	1717450	1717455	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
2504	NC_017272	CCT	2	6	1721814	1721819	0 %	33.33 %	0 %	66.67 %	Non-Coding
2505	NC_017272	GCGGG	2	10	1723645	1723654	0 %	0 %	80 %	20 %	Non-Coding
2506	NC_017272	AAGG	2	8	1731630	1731637	50 %	0 %	50 %	0 %	Non-Coding
2507	NC_017272	GCC	2	6	1731641	1731646	0 %	0 %	33.33 %	66.67 %	Non-Coding
2508	NC_017272	TTC	2	6	1731665	1731670	0 %	66.67 %	0 %	33.33 %	Non-Coding
2509	NC_017272	TGGC	2	8	1731695	1731702	0 %	25 %	50 %	25 %	Non-Coding
2510	NC_017272	ATT	2	6	1739166	1739171	33.33 %	66.67 %	0 %	0 %	Non-Coding
2511	NC_017272	GAG	2	6	1739190	1739195	33.33 %	0 %	66.67 %	0 %	Non-Coding
2512	NC_017272	G	6	6	1749105	1749110	0 %	0 %	100 %	0 %	Non-Coding
2513	NC_017272	C	6	6	1750979	1750984	0 %	0 %	0 %	100 %	Non-Coding
2514	NC_017272	GGC	2	6	1752401	1752406	0 %	0 %	66.67 %	33.33 %	Non-Coding
2515	NC_017272	C	7	7	1752430	1752436	0 %	0 %	0 %	100 %	Non-Coding
2516	NC_017272	T	6	6	1753809	1753814	0 %	100 %	0 %	0 %	Non-Coding
2517	NC_017272	AAG	2	6	1753835	1753840	66.67 %	0 %	33.33 %	0 %	Non-Coding
2518	NC_017272	TTG	2	6	1756636	1756641	0 %	66.67 %	33.33 %	0 %	Non-Coding
2519	NC_017272	GAG	2	6	1756668	1756673	33.33 %	0 %	66.67 %	0 %	Non-Coding
2520	NC_017272	T	6	6	1758873	1758878	0 %	100 %	0 %	0 %	Non-Coding
2521	NC_017272	GGA	2	6	1758881	1758886	33.33 %	0 %	66.67 %	0 %	Non-Coding
2522	NC_017272	CCA	2	6	1763501	1763506	33.33 %	0 %	0 %	66.67 %	Non-Coding
2523	NC_017272	GGA	2	6	1764042	1764047	33.33 %	0 %	66.67 %	0 %	Non-Coding
2524	NC_017272	C	6	6	1764079	1764084	0 %	0 %	0 %	100 %	Non-Coding
2525	NC_017272	CTC	2	6	1764100	1764105	0 %	33.33 %	0 %	66.67 %	Non-Coding
2526	NC_017272	CCG	2	6	1764141	1764146	0 %	0 %	33.33 %	66.67 %	Non-Coding
2527	NC_017272	AGG	2	6	1764713	1764718	33.33 %	0 %	66.67 %	0 %	Non-Coding
2528	NC_017272	TGG	2	6	1764757	1764762	0 %	33.33 %	66.67 %	0 %	Non-Coding
2529	NC_017272	GC	3	6	1764766	1764771	0 %	0 %	50 %	50 %	Non-Coding
2530	NC_017272	CGG	2	6	1764781	1764786	0 %	0 %	66.67 %	33.33 %	Non-Coding
2531	NC_017272	CTCC	2	8	1764838	1764845	0 %	25 %	0 %	75 %	Non-Coding
2532	NC_017272	G	7	7	1764868	1764874	0 %	0 %	100 %	0 %	Non-Coding
2533	NC_017272	TCC	2	6	1764898	1764903	0 %	33.33 %	0 %	66.67 %	Non-Coding
2534	NC_017272	CCG	2	6	1765018	1765023	0 %	0 %	33.33 %	66.67 %	Non-Coding
2535	NC_017272	G	6	6	1766741	1766746	0 %	0 %	100 %	0 %	Non-Coding
2536	NC_017272	CCG	2	6	1767873	1767878	0 %	0 %	33.33 %	66.67 %	Non-Coding
2537	NC_017272	TCC	2	6	1767895	1767900	0 %	33.33 %	0 %	66.67 %	Non-Coding
2538	NC_017272	GCC	2	6	1767907	1767912	0 %	0 %	33.33 %	66.67 %	Non-Coding
2539	NC_017272	TCC	2	6	1767956	1767961	0 %	33.33 %	0 %	66.67 %	Non-Coding
2540	NC_017272	GCCCTG	2	12	1774599	1774610	0 %	16.67 %	33.33 %	50 %	Non-Coding
2541	NC_017272	G	6	6	1774660	1774665	0 %	0 %	100 %	0 %	Non-Coding
2542	NC_017272	CCA	2	6	1774706	1774711	33.33 %	0 %	0 %	66.67 %	Non-Coding
2543	NC_017272	C	7	7	1774729	1774735	0 %	0 %	0 %	100 %	Non-Coding
2544	NC_017272	GCC	2	6	1774763	1774768	0 %	0 %	33.33 %	66.67 %	Non-Coding
2545	NC_017272	C	7	7	1774790	1774796	0 %	0 %	0 %	100 %	Non-Coding
2546	NC_017272	G	6	6	1774855	1774860	0 %	0 %	100 %	0 %	Non-Coding
2547	NC_017272	GGCG	2	8	1774920	1774927	0 %	0 %	75 %	25 %	Non-Coding
2548	NC_017272	TCC	2	6	1775025	1775030	0 %	33.33 %	0 %	66.67 %	Non-Coding
2549	NC_017272	GGC	2	6	1775032	1775037	0 %	0 %	66.67 %	33.33 %	Non-Coding
2550	NC_017272	GAG	2	6	1775068	1775073	33.33 %	0 %	66.67 %	0 %	Non-Coding
2551	NC_017272	GAG	2	6	1775081	1775086	33.33 %	0 %	66.67 %	0 %	Non-Coding
2552	NC_017272	GCC	3	9	1776794	1776802	0 %	0 %	33.33 %	66.67 %	Non-Coding
2553	NC_017272	CAC	2	6	1776805	1776810	33.33 %	0 %	0 %	66.67 %	Non-Coding
2554	NC_017272	CGC	2	6	1776811	1776816	0 %	0 %	33.33 %	66.67 %	Non-Coding
2555	NC_017272	GCC	2	6	1776860	1776865	0 %	0 %	33.33 %	66.67 %	Non-Coding
2556	NC_017272	CCT	2	6	1776910	1776915	0 %	33.33 %	0 %	66.67 %	Non-Coding
2557	NC_017272	CCG	2	6	1776950	1776955	0 %	0 %	33.33 %	66.67 %	Non-Coding
2558	NC_017272	CG	3	6	1776978	1776983	0 %	0 %	50 %	50 %	Non-Coding
2559	NC_017272	CG	3	6	1777014	1777019	0 %	0 %	50 %	50 %	Non-Coding
2560	NC_017272	CCCT	2	8	1777046	1777053	0 %	25 %	0 %	75 %	Non-Coding
2561	NC_017272	GCCCCG	2	12	1777146	1777157	0 %	0 %	33.33 %	66.67 %	Non-Coding
2562	NC_017272	TAG	2	6	1777234	1777239	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
2563	NC_017272	CGGG	2	8	1781207	1781214	0 %	0 %	75 %	25 %	Non-Coding
2564	NC_017272	C	6	6	1781854	1781859	0 %	0 %	0 %	100 %	Non-Coding
2565	NC_017272	ACC	2	6	1783867	1783872	33.33 %	0 %	0 %	66.67 %	Non-Coding
2566	NC_017272	TGG	2	6	1783874	1783879	0 %	33.33 %	66.67 %	0 %	Non-Coding
2567	NC_017272	GAG	2	6	1785564	1785569	33.33 %	0 %	66.67 %	0 %	Non-Coding
2568	NC_017272	GGT	2	6	1789011	1789016	0 %	33.33 %	66.67 %	0 %	Non-Coding
2569	NC_017272	G	6	6	1789034	1789039	0 %	0 %	100 %	0 %	Non-Coding
2570	NC_017272	GCCC	2	8	1789058	1789065	0 %	0 %	25 %	75 %	Non-Coding
2571	NC_017272	GGAG	2	8	1789071	1789078	25 %	0 %	75 %	0 %	Non-Coding
2572	NC_017272	AG	3	6	1789077	1789082	50 %	0 %	50 %	0 %	Non-Coding
2573	NC_017272	AGG	2	6	1789151	1789156	33.33 %	0 %	66.67 %	0 %	Non-Coding
2574	NC_017272	GCC	2	6	1789163	1789168	0 %	0 %	33.33 %	66.67 %	Non-Coding
2575	NC_017272	TGG	2	6	1789190	1789195	0 %	33.33 %	66.67 %	0 %	Non-Coding
2576	NC_017272	ACG	2	6	1789328	1789333	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
2577	NC_017272	C	7	7	1789386	1789392	0 %	0 %	0 %	100 %	Non-Coding
2578	NC_017272	TGA	2	6	1789421	1789426	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
2579	NC_017272	GAT	2	6	1789431	1789436	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
2580	NC_017272	CGC	2	6	1789455	1789460	0 %	0 %	33.33 %	66.67 %	Non-Coding
2581	NC_017272	GGGAGC	2	12	1789466	1789477	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
2582	NC_017272	TCC	2	6	1789556	1789561	0 %	33.33 %	0 %	66.67 %	Non-Coding
2583	NC_017272	C	6	6	1789573	1789578	0 %	0 %	0 %	100 %	Non-Coding
2584	NC_017272	ACGCCC	2	12	1789592	1789603	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
2585	NC_017272	GGA	2	6	1789632	1789637	33.33 %	0 %	66.67 %	0 %	Non-Coding
2586	NC_017272	GGCT	2	8	1789639	1789646	0 %	25 %	50 %	25 %	Non-Coding
2587	NC_017272	ACG	2	6	1789664	1789669	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
2588	NC_017272	GGT	2	6	1789692	1789697	0 %	33.33 %	66.67 %	0 %	Non-Coding
2589	NC_017272	GAG	2	6	1789756	1789761	33.33 %	0 %	66.67 %	0 %	Non-Coding
2590	NC_017272	GTG	2	6	1789762	1789767	0 %	33.33 %	66.67 %	0 %	Non-Coding
2591	NC_017272	CTGG	2	8	1789809	1789816	0 %	25 %	50 %	25 %	Non-Coding
2592	NC_017272	AGG	2	6	1789826	1789831	33.33 %	0 %	66.67 %	0 %	Non-Coding
2593	NC_017272	CGC	2	6	1789842	1789847	0 %	0 %	33.33 %	66.67 %	Non-Coding
2594	NC_017272	AGG	2	6	1789865	1789870	33.33 %	0 %	66.67 %	0 %	Non-Coding
2595	NC_017272	CCT	2	6	1789926	1789931	0 %	33.33 %	0 %	66.67 %	Non-Coding
2596	NC_017272	CTC	2	6	1790008	1790013	0 %	33.33 %	0 %	66.67 %	Non-Coding
2597	NC_017272	TCC	2	6	1790033	1790038	0 %	33.33 %	0 %	66.67 %	Non-Coding
2598	NC_017272	GCG	2	6	1790118	1790123	0 %	0 %	66.67 %	33.33 %	Non-Coding
2599	NC_017272	GCT	2	6	1790144	1790149	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
2600	NC_017272	CGC	2	6	1790183	1790188	0 %	0 %	33.33 %	66.67 %	Non-Coding
2601	NC_017272	GTA	2	6	1790207	1790212	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
2602	NC_017272	CTC	2	6	1795980	1795985	0 %	33.33 %	0 %	66.67 %	Non-Coding
2603	NC_017272	AAGG	2	8	1795995	1796002	50 %	0 %	50 %	0 %	Non-Coding
2604	NC_017272	G	8	8	1796029	1796036	0 %	0 %	100 %	0 %	Non-Coding
2605	NC_017272	CCT	2	6	1796048	1796053	0 %	33.33 %	0 %	66.67 %	Non-Coding
2606	NC_017272	C	6	6	1799080	1799085	0 %	0 %	0 %	100 %	Non-Coding
2607	NC_017272	AGG	2	6	1799086	1799091	33.33 %	0 %	66.67 %	0 %	Non-Coding
2608	NC_017272	GCC	2	6	1799220	1799225	0 %	0 %	33.33 %	66.67 %	Non-Coding
2609	NC_017272	GCCC	2	8	1799234	1799241	0 %	0 %	25 %	75 %	Non-Coding
2610	NC_017272	CGCC	2	8	1799242	1799249	0 %	0 %	25 %	75 %	Non-Coding
2611	NC_017272	CCG	2	6	1799324	1799329	0 %	0 %	33.33 %	66.67 %	Non-Coding
2612	NC_017272	GAA	2	6	1799331	1799336	66.67 %	0 %	33.33 %	0 %	Non-Coding
2613	NC_017272	CCG	2	6	1801215	1801220	0 %	0 %	33.33 %	66.67 %	Non-Coding
2614	NC_017272	GGT	2	6	1808186	1808191	0 %	33.33 %	66.67 %	0 %	Non-Coding
2615	NC_017272	GCC	2	6	1810126	1810131	0 %	0 %	33.33 %	66.67 %	Non-Coding
2616	NC_017272	GTG	2	6	1810159	1810164	0 %	33.33 %	66.67 %	0 %	Non-Coding
2617	NC_017272	CCT	2	6	1812398	1812403	0 %	33.33 %	0 %	66.67 %	Non-Coding
2618	NC_017272	AAG	2	6	1814015	1814020	66.67 %	0 %	33.33 %	0 %	Non-Coding
2619	NC_017272	C	6	6	1814040	1814045	0 %	0 %	0 %	100 %	Non-Coding
2620	NC_017272	GGC	2	6	1814046	1814051	0 %	0 %	66.67 %	33.33 %	Non-Coding
2621	NC_017272	T	6	6	1814056	1814061	0 %	100 %	0 %	0 %	Non-Coding
2622	NC_017272	CG	3	6	1814062	1814067	0 %	0 %	50 %	50 %	Non-Coding
2623	NC_017272	CGC	2	6	1814100	1814105	0 %	0 %	33.33 %	66.67 %	Non-Coding
2624	NC_017272	GGGCG	2	10	1814927	1814936	0 %	0 %	80 %	20 %	Non-Coding
2625	NC_017272	A	6	6	1816086	1816091	100 %	0 %	0 %	0 %	Non-Coding
2626	NC_017272	CTC	2	6	1818878	1818883	0 %	33.33 %	0 %	66.67 %	Non-Coding
2627	NC_017272	G	6	6	1818941	1818946	0 %	0 %	100 %	0 %	Non-Coding
2628	NC_017272	A	6	6	1818966	1818971	100 %	0 %	0 %	0 %	Non-Coding
2629	NC_017272	A	6	6	1818987	1818992	100 %	0 %	0 %	0 %	Non-Coding
2630	NC_017272	CGGCT	2	10	1819094	1819103	0 %	20 %	40 %	40 %	Non-Coding
2631	NC_017272	CGC	2	6	1819136	1819141	0 %	0 %	33.33 %	66.67 %	Non-Coding
2632	NC_017272	CGG	2	6	1819220	1819225	0 %	0 %	66.67 %	33.33 %	Non-Coding
2633	NC_017272	GAC	2	6	1819252	1819257	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
2634	NC_017272	CCT	2	6	1819328	1819333	0 %	33.33 %	0 %	66.67 %	Non-Coding
2635	NC_017272	AAT	2	6	1823516	1823521	66.67 %	33.33 %	0 %	0 %	Non-Coding
2636	NC_017272	GGA	2	6	1824443	1824448	33.33 %	0 %	66.67 %	0 %	Non-Coding
2637	NC_017272	CTG	2	6	1824463	1824468	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
2638	NC_017272	GTG	2	6	1824891	1824896	0 %	33.33 %	66.67 %	0 %	Non-Coding
2639	NC_017272	CGG	2	6	1828159	1828164	0 %	0 %	66.67 %	33.33 %	Non-Coding
2640	NC_017272	CCTC	2	8	1831352	1831359	0 %	25 %	0 %	75 %	Non-Coding
2641	NC_017272	CAC	2	6	1831388	1831393	33.33 %	0 %	0 %	66.67 %	Non-Coding
2642	NC_017272	CTA	2	6	1833406	1833411	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
2643	NC_017272	CTC	2	6	1833414	1833419	0 %	33.33 %	0 %	66.67 %	Non-Coding
2644	NC_017272	TA	3	6	1835645	1835650	50 %	50 %	0 %	0 %	Non-Coding
2645	NC_017272	A	6	6	1835671	1835676	100 %	0 %	0 %	0 %	Non-Coding
2646	NC_017272	CGC	2	6	1835787	1835792	0 %	0 %	33.33 %	66.67 %	Non-Coding
2647	NC_017272	C	6	6	1839205	1839210	0 %	0 %	0 %	100 %	Non-Coding
2648	NC_017272	AAGG	2	8	1839216	1839223	50 %	0 %	50 %	0 %	Non-Coding
2649	NC_017272	CCCG	2	8	1840637	1840644	0 %	0 %	25 %	75 %	Non-Coding
2650	NC_017272	GGC	2	6	1840655	1840660	0 %	0 %	66.67 %	33.33 %	Non-Coding
2651	NC_017272	GCC	2	6	1845190	1845195	0 %	0 %	33.33 %	66.67 %	Non-Coding
2652	NC_017272	GGGTA	2	10	1845203	1845212	20 %	20 %	60 %	0 %	Non-Coding
2653	NC_017272	G	6	6	1845221	1845226	0 %	0 %	100 %	0 %	Non-Coding
2654	NC_017272	CCT	2	6	1849291	1849296	0 %	33.33 %	0 %	66.67 %	Non-Coding
2655	NC_017272	C	6	6	1855571	1855576	0 %	0 %	0 %	100 %	Non-Coding
2656	NC_017272	CCCGG	2	10	1855602	1855611	0 %	0 %	40 %	60 %	Non-Coding
2657	NC_017272	CTC	2	6	1856818	1856823	0 %	33.33 %	0 %	66.67 %	Non-Coding
2658	NC_017272	CCT	2	6	1856826	1856831	0 %	33.33 %	0 %	66.67 %	Non-Coding
2659	NC_017272	CGCCCC	2	12	1856850	1856861	0 %	0 %	16.67 %	83.33 %	Non-Coding

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©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.