MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Thermus thermophilus HB8 plasmid pTT8

Total Repeats: 74

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_006463	G	6	6	10	15	0 %	0 %	100 %	0 %	Non-Coding
2	NC_006463	AGG	2	6	17	22	33.33 %	0 %	66.67 %	0 %	Non-Coding
3	NC_006463	CAC	2	6	35	40	33.33 %	0 %	0 %	66.67 %	Non-Coding
4	NC_006463	CCGG	2	8	43	50	0 %	0 %	50 %	50 %	Non-Coding
5	NC_006463	TGG	2	6	1322	1327	0 %	33.33 %	66.67 %	0 %	Non-Coding
6	NC_006463	AG	3	6	1401	1406	50 %	0 %	50 %	0 %	Non-Coding
7	NC_006463	CTT	2	6	1439	1444	0 %	66.67 %	0 %	33.33 %	Non-Coding
8	NC_006463	GA	3	6	1499	1504	50 %	0 %	50 %	0 %	Non-Coding
9	NC_006463	CGCA	2	8	1535	1542	25 %	0 %	25 %	50 %	Non-Coding
10	NC_006463	G	6	6	1616	1621	0 %	0 %	100 %	0 %	Non-Coding
11	NC_006463	G	6	6	1627	1632	0 %	0 %	100 %	0 %	Non-Coding
12	NC_006463	C	6	6	1649	1654	0 %	0 %	0 %	100 %	Non-Coding
13	NC_006463	C	6	6	1656	1661	0 %	0 %	0 %	100 %	Non-Coding
14	NC_006463	GC	3	6	1823	1828	0 %	0 %	50 %	50 %	Non-Coding
15	NC_006463	TTC	2	6	1829	1834	0 %	66.67 %	0 %	33.33 %	Non-Coding
16	NC_006463	A	6	6	1839	1844	100 %	0 %	0 %	0 %	Non-Coding
17	NC_006463	TTC	2	6	1846	1851	0 %	66.67 %	0 %	33.33 %	Non-Coding
18	NC_006463	TCCC	2	8	2152	2159	0 %	25 %	0 %	75 %	Non-Coding
19	NC_006463	GTG	2	6	3468	3473	0 %	33.33 %	66.67 %	0 %	Non-Coding
20	NC_006463	TCC	2	6	4274	4279	0 %	33.33 %	0 %	66.67 %	Non-Coding
21	NC_006463	GCCCT	2	10	4327	4336	0 %	20 %	20 %	60 %	Non-Coding
22	NC_006463	GGGC	2	8	4377	4384	0 %	0 %	75 %	25 %	Non-Coding
23	NC_006463	GGGC	2	8	4402	4409	0 %	0 %	75 %	25 %	Non-Coding
24	NC_006463	GCCCG	2	10	4430	4439	0 %	0 %	40 %	60 %	Non-Coding
25	NC_006463	G	6	6	4447	4452	0 %	0 %	100 %	0 %	Non-Coding
26	NC_006463	C	6	6	4498	4503	0 %	0 %	0 %	100 %	Non-Coding
27	NC_006463	GGCA	2	8	4585	4592	25 %	0 %	50 %	25 %	Non-Coding
28	NC_006463	CGC	2	6	4684	4689	0 %	0 %	33.33 %	66.67 %	Non-Coding
29	NC_006463	TCC	2	6	4757	4762	0 %	33.33 %	0 %	66.67 %	Non-Coding
30	NC_006463	CG	3	6	4768	4773	0 %	0 %	50 %	50 %	Non-Coding
31	NC_006463	GGA	2	6	4803	4808	33.33 %	0 %	66.67 %	0 %	Non-Coding
32	NC_006463	TGGC	2	8	4868	4875	0 %	25 %	50 %	25 %	Non-Coding
33	NC_006463	GGCC	2	8	4881	4888	0 %	0 %	50 %	50 %	Non-Coding
34	NC_006463	CCG	2	6	4890	4895	0 %	0 %	33.33 %	66.67 %	Non-Coding
35	NC_006463	GCC	2	6	4913	4918	0 %	0 %	33.33 %	66.67 %	Non-Coding
36	NC_006463	CGCC	2	8	4920	4927	0 %	0 %	25 %	75 %	Non-Coding
37	NC_006463	GGA	2	6	4968	4973	33.33 %	0 %	66.67 %	0 %	Non-Coding
38	NC_006463	AGT	2	6	4982	4987	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
39	NC_006463	TAC	2	6	5010	5015	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
40	NC_006463	CGC	2	6	5129	5134	0 %	0 %	33.33 %	66.67 %	Non-Coding
41	NC_006463	CCG	2	6	5143	5148	0 %	0 %	33.33 %	66.67 %	Non-Coding
42	NC_006463	GAC	2	6	5155	5160	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
43	NC_006463	CG	3	6	5176	5181	0 %	0 %	50 %	50 %	Non-Coding
44	NC_006463	GCC	2	6	5317	5322	0 %	0 %	33.33 %	66.67 %	Non-Coding
45	NC_006463	C	6	6	5401	5406	0 %	0 %	0 %	100 %	Non-Coding
46	NC_006463	G	6	6	5434	5439	0 %	0 %	100 %	0 %	Non-Coding
47	NC_006463	GGCGT	2	10	5449	5458	0 %	20 %	60 %	20 %	Non-Coding
48	NC_006463	TCCGCT	2	12	5534	5545	0 %	33.33 %	16.67 %	50 %	Non-Coding
49	NC_006463	C	7	7	5547	5553	0 %	0 %	0 %	100 %	Non-Coding
50	NC_006463	CCTC	2	8	5564	5571	0 %	25 %	0 %	75 %	Non-Coding
51	NC_006463	GGC	2	6	5572	5577	0 %	0 %	66.67 %	33.33 %	Non-Coding
52	NC_006463	CGAC	2	8	5614	5621	25 %	0 %	25 %	50 %	Non-Coding
53	NC_006463	CGC	2	6	5633	5638	0 %	0 %	33.33 %	66.67 %	Non-Coding
54	NC_006463	CACC	2	8	5690	5697	25 %	0 %	0 %	75 %	Non-Coding
55	NC_006463	GGC	2	6	5698	5703	0 %	0 %	66.67 %	33.33 %	Non-Coding
56	NC_006463	TCC	2	6	5796	5801	0 %	33.33 %	0 %	66.67 %	Non-Coding
57	NC_006463	ACGC	2	8	5900	5907	25 %	0 %	25 %	50 %	Non-Coding
58	NC_006463	CCG	3	9	5941	5949	0 %	0 %	33.33 %	66.67 %	Non-Coding
59	NC_006463	AGGGG	2	10	5997	6006	20 %	0 %	80 %	0 %	Non-Coding
60	NC_006463	G	7	7	6003	6009	0 %	0 %	100 %	0 %	Non-Coding
61	NC_006463	A	8	8	6017	6024	100 %	0 %	0 %	0 %	Non-Coding
62	NC_006463	GCC	3	9	6027	6035	0 %	0 %	33.33 %	66.67 %	Non-Coding
63	NC_006463	C	6	6	6034	6039	0 %	0 %	0 %	100 %	Non-Coding
64	NC_006463	GCC	2	6	6043	6048	0 %	0 %	33.33 %	66.67 %	Non-Coding
65	NC_006463	C	6	6	6047	6052	0 %	0 %	0 %	100 %	Non-Coding
66	NC_006463	C	7	7	6132	6138	0 %	0 %	0 %	100 %	Non-Coding
67	NC_006463	GTAGG	2	10	8174	8183	20 %	20 %	60 %	0 %	Non-Coding
68	NC_006463	GGCCC	2	10	8189	8198	0 %	0 %	40 %	60 %	Non-Coding
69	NC_006463	G	6	6	8697	8702	0 %	0 %	100 %	0 %	Non-Coding
70	NC_006463	G	6	6	9250	9255	0 %	0 %	100 %	0 %	Non-Coding
71	NC_006463	ATGA	2	8	9257	9264	50 %	25 %	25 %	0 %	Non-Coding
72	NC_006463	CCG	2	6	9286	9291	0 %	0 %	33.33 %	66.67 %	Non-Coding
73	NC_006463	CTC	2	6	9298	9303	0 %	33.33 %	0 %	66.67 %	Non-Coding
74	NC_006463	AGG	2	6	9307	9312	33.33 %	0 %	66.67 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.