MICAS: Microsatellite Analysis Server 3.0

All Repeats of Thermus thermophilus SG0.5JP17-16 chromosome

Total Repeats: 49593

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S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
49501	NC_017272	GCCC	2	8	1860165	1860172	0 %	0 %	25 %	75 %	384432126
49502	NC_017272	CCT	2	6	1860176	1860181	0 %	33.33 %	0 %	66.67 %	384432126
49503	NC_017272	GAG	2	6	1860192	1860197	33.33 %	0 %	66.67 %	0 %	384432126
49504	NC_017272	GTA	2	6	1860219	1860224	33.33 %	33.33 %	33.33 %	0 %	384432126
49505	NC_017272	ACC	3	9	1860241	1860249	33.33 %	0 %	0 %	66.67 %	384432126
49506	NC_017272	CCG	2	6	1860254	1860259	0 %	0 %	33.33 %	66.67 %	384432126
49507	NC_017272	TGAGGG	2	12	1860272	1860283	16.67 %	16.67 %	66.67 %	0 %	384432126
49508	NC_017272	G	6	6	1860281	1860286	0 %	0 %	100 %	0 %	384432126
49509	NC_017272	AGG	2	6	1860307	1860312	33.33 %	0 %	66.67 %	0 %	384432126
49510	NC_017272	CCA	2	6	1860386	1860391	33.33 %	0 %	0 %	66.67 %	384432126
49511	NC_017272	AGG	2	6	1860409	1860414	33.33 %	0 %	66.67 %	0 %	384432126
49512	NC_017272	GGA	2	6	1860461	1860466	33.33 %	0 %	66.67 %	0 %	384432126
49513	NC_017272	GGT	2	6	1860467	1860472	0 %	33.33 %	66.67 %	0 %	384432126
49514	NC_017272	C	6	6	1860476	1860481	0 %	0 %	0 %	100 %	384432126
49515	NC_017272	CCGC	2	8	1860485	1860492	0 %	0 %	25 %	75 %	384432126
49516	NC_017272	TGG	2	6	1860506	1860511	0 %	33.33 %	66.67 %	0 %	384432126
49517	NC_017272	GTCCAG	2	12	1860525	1860536	16.67 %	16.67 %	33.33 %	33.33 %	384432126
49518	NC_017272	AGG	2	6	1860538	1860543	33.33 %	0 %	66.67 %	0 %	384432126
49519	NC_017272	GTG	2	6	1860589	1860594	0 %	33.33 %	66.67 %	0 %	384432126
49520	NC_017272	GGC	2	6	1860710	1860715	0 %	0 %	66.67 %	33.33 %	384432127
49521	NC_017272	GC	3	6	1860737	1860742	0 %	0 %	50 %	50 %	384432127
49522	NC_017272	AG	3	6	1860749	1860754	50 %	0 %	50 %	0 %	384432127
49523	NC_017272	GCC	2	6	1860784	1860789	0 %	0 %	33.33 %	66.67 %	384432127
49524	NC_017272	G	6	6	1860809	1860814	0 %	0 %	100 %	0 %	384432127
49525	NC_017272	G	6	6	1860817	1860822	0 %	0 %	100 %	0 %	384432127
49526	NC_017272	CTC	2	6	1860827	1860832	0 %	33.33 %	0 %	66.67 %	384432127
49527	NC_017272	CCG	2	6	1860859	1860864	0 %	0 %	33.33 %	66.67 %	384432127
49528	NC_017272	G	6	6	1860913	1860918	0 %	0 %	100 %	0 %	384432127
49529	NC_017272	GGGCCC	2	12	1860997	1861008	0 %	0 %	50 %	50 %	384432127
49530	NC_017272	CTT	2	6	1861052	1861057	0 %	66.67 %	0 %	33.33 %	384432127
49531	NC_017272	GAG	2	6	1861181	1861186	33.33 %	0 %	66.67 %	0 %	384432127
49532	NC_017272	ACC	3	9	1861212	1861220	33.33 %	0 %	0 %	66.67 %	384432127
49533	NC_017272	TCC	2	6	1861221	1861226	0 %	33.33 %	0 %	66.67 %	384432127
49534	NC_017272	CGC	2	6	1861228	1861233	0 %	0 %	33.33 %	66.67 %	384432127
49535	NC_017272	CCT	2	6	1861264	1861269	0 %	33.33 %	0 %	66.67 %	384432127
49536	NC_017272	GGA	2	6	1861270	1861275	33.33 %	0 %	66.67 %	0 %	384432127
49537	NC_017272	C	6	6	1861335	1861340	0 %	0 %	0 %	100 %	384432127
49538	NC_017272	GGCCC	2	10	1861352	1861361	0 %	0 %	40 %	60 %	384432127
49539	NC_017272	CGC	2	6	1861409	1861414	0 %	0 %	33.33 %	66.67 %	384432128
49540	NC_017272	GCC	2	6	1861466	1861471	0 %	0 %	33.33 %	66.67 %	384432128
49541	NC_017272	CCG	2	6	1861509	1861514	0 %	0 %	33.33 %	66.67 %	384432128
49542	NC_017272	TCT	2	6	1861587	1861592	0 %	66.67 %	0 %	33.33 %	384432128
49543	NC_017272	CCT	2	6	1861656	1861661	0 %	33.33 %	0 %	66.67 %	384432128
49544	NC_017272	CGGG	2	8	1861677	1861684	0 %	0 %	75 %	25 %	384432128
49545	NC_017272	G	6	6	1861682	1861687	0 %	0 %	100 %	0 %	384432128
49546	NC_017272	GCC	2	6	1861722	1861727	0 %	0 %	33.33 %	66.67 %	384432128
49547	NC_017272	CTC	2	6	1861783	1861788	0 %	33.33 %	0 %	66.67 %	384432128
49548	NC_017272	TCC	2	6	1861826	1861831	0 %	33.33 %	0 %	66.67 %	384432128
49549	NC_017272	TCG	2	6	1861874	1861879	0 %	33.33 %	33.33 %	33.33 %	384432128
49550	NC_017272	AGG	2	6	1861898	1861903	33.33 %	0 %	66.67 %	0 %	384432128
49551	NC_017272	TCA	2	6	1861923	1861928	33.33 %	33.33 %	0 %	33.33 %	384432128
49552	NC_017272	GTC	2	6	1861963	1861968	0 %	33.33 %	33.33 %	33.33 %	384432128
49553	NC_017272	GCG	2	6	1862036	1862041	0 %	0 %	66.67 %	33.33 %	384432128
49554	NC_017272	GCC	3	9	1862066	1862074	0 %	0 %	33.33 %	66.67 %	384432128
49555	NC_017272	AGG	2	6	1862126	1862131	33.33 %	0 %	66.67 %	0 %	384432128
49556	NC_017272	GGCGTA	2	12	1862185	1862196	16.67 %	16.67 %	50 %	16.67 %	384432128
49557	NC_017272	CCGC	2	8	1862208	1862215	0 %	0 %	25 %	75 %	384432128
49558	NC_017272	GGGA	2	8	1862225	1862232	25 %	0 %	75 %	0 %	384432128
49559	NC_017272	TCC	2	6	1862243	1862248	0 %	33.33 %	0 %	66.67 %	384432128
49560	NC_017272	GGGA	2	8	1862257	1862264	25 %	0 %	75 %	0 %	384432128
49561	NC_017272	GAG	2	6	1862270	1862275	33.33 %	0 %	66.67 %	0 %	384432128
49562	NC_017272	GGT	2	6	1862296	1862301	0 %	33.33 %	66.67 %	0 %	384432128
49563	NC_017272	AGG	2	6	1862327	1862332	33.33 %	0 %	66.67 %	0 %	384432128
49564	NC_017272	CAC	2	6	1862356	1862361	33.33 %	0 %	0 %	66.67 %	384432128
49565	NC_017272	G	6	6	1862421	1862426	0 %	0 %	100 %	0 %	384432128
49566	NC_017272	GTG	2	6	1862468	1862473	0 %	33.33 %	66.67 %	0 %	384432128
49567	NC_017272	GGC	2	6	1862497	1862502	0 %	0 %	66.67 %	33.33 %	384432128
49568	NC_017272	GGC	2	6	1862534	1862539	0 %	0 %	66.67 %	33.33 %	384432128
49569	NC_017272	G	7	7	1862545	1862551	0 %	0 %	100 %	0 %	384432128
49570	NC_017272	ACC	2	6	1862552	1862557	33.33 %	0 %	0 %	66.67 %	384432128
49571	NC_017272	CCGA	2	8	1862563	1862570	25 %	0 %	25 %	50 %	384432128
49572	NC_017272	CG	3	6	1862584	1862589	0 %	0 %	50 %	50 %	384432128
49573	NC_017272	CGG	2	6	1862688	1862693	0 %	0 %	66.67 %	33.33 %	384432128
49574	NC_017272	CTTC	2	8	1862701	1862708	0 %	50 %	0 %	50 %	384432128
49575	NC_017272	ACC	2	6	1862717	1862722	33.33 %	0 %	0 %	66.67 %	384432128
49576	NC_017272	C	7	7	1862737	1862743	0 %	0 %	0 %	100 %	384432128
49577	NC_017272	CCA	3	9	1862745	1862753	33.33 %	0 %	0 %	66.67 %	384432128
49578	NC_017272	GCCC	2	8	1862771	1862778	0 %	0 %	25 %	75 %	384432128
49579	NC_017272	C	7	7	1862806	1862812	0 %	0 %	0 %	100 %	384432128
49580	NC_017272	GCC	2	6	1862825	1862830	0 %	0 %	33.33 %	66.67 %	384432128
49581	NC_017272	GCA	2	6	1862841	1862846	33.33 %	0 %	33.33 %	33.33 %	384432128
49582	NC_017272	CCA	2	6	1862862	1862867	33.33 %	0 %	0 %	66.67 %	384432128
49583	NC_017272	GGC	3	9	1862968	1862976	0 %	0 %	66.67 %	33.33 %	384432128
49584	NC_017272	CCG	2	6	1862979	1862984	0 %	0 %	33.33 %	66.67 %	384432128
49585	NC_017272	GCCC	2	8	1862997	1863004	0 %	0 %	25 %	75 %	384432128
49586	NC_017272	CCA	2	6	1863009	1863014	33.33 %	0 %	0 %	66.67 %	384432128
49587	NC_017272	C	7	7	1863043	1863049	0 %	0 %	0 %	100 %	384432128
49588	NC_017272	CGG	2	6	1863051	1863056	0 %	0 %	66.67 %	33.33 %	384432128
49589	NC_017272	CAT	2	6	1863067	1863072	33.33 %	33.33 %	0 %	33.33 %	384432128
49590	NC_017272	GCC	3	9	1863125	1863133	0 %	0 %	33.33 %	66.67 %	384432128
49591	NC_017272	GCC	2	6	1863137	1863142	0 %	0 %	33.33 %	66.67 %	384432128
49592	NC_017272	CAC	4	12	1863166	1863177	33.33 %	0 %	0 %	66.67 %	384432128
49593	NC_017272	CCATC	2	10	1863189	1863198	20 %	20 %	0 %	60 %	384432128

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©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.