MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 chromosome

Total Repeats: 16585

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S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
16501	NC_006511	CTGAT	2	10	4556236	4556245	20 %	40 %	20 %	20 %	Non-Coding
16502	NC_006511	ATT	2	6	4556248	4556253	33.33 %	66.67 %	0 %	0 %	Non-Coding
16503	NC_006511	TCG	2	6	4557593	4557598	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
16504	NC_006511	AC	3	6	4557641	4557646	50 %	0 %	0 %	50 %	Non-Coding
16505	NC_006511	GCC	2	6	4557671	4557676	0 %	0 %	33.33 %	66.67 %	Non-Coding
16506	NC_006511	AAC	2	6	4557687	4557692	66.67 %	0 %	0 %	33.33 %	Non-Coding
16507	NC_006511	TGTGC	2	10	4558436	4558445	0 %	40 %	40 %	20 %	Non-Coding
16508	NC_006511	GCC	2	6	4558523	4558528	0 %	0 %	33.33 %	66.67 %	Non-Coding
16509	NC_006511	GCC	2	6	4559196	4559201	0 %	0 %	33.33 %	66.67 %	Non-Coding
16510	NC_006511	TTA	2	6	4560249	4560254	33.33 %	66.67 %	0 %	0 %	Non-Coding
16511	NC_006511	CTG	2	6	4560917	4560922	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
16512	NC_006511	AGCGCC	2	12	4562033	4562044	16.67 %	0 %	33.33 %	50 %	Non-Coding
16513	NC_006511	TGTA	2	8	4563466	4563473	25 %	50 %	25 %	0 %	Non-Coding
16514	NC_006511	TGT	2	6	4563478	4563483	0 %	66.67 %	33.33 %	0 %	Non-Coding
16515	NC_006511	TGT	2	6	4563544	4563549	0 %	66.67 %	33.33 %	0 %	Non-Coding
16516	NC_006511	AAGCG	2	10	4563559	4563568	40 %	0 %	40 %	20 %	Non-Coding
16517	NC_006511	AAGCGC	2	12	4564931	4564942	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
16518	NC_006511	CAGC	2	8	4566708	4566715	25 %	0 %	25 %	50 %	Non-Coding
16519	NC_006511	A	6	6	4566738	4566743	100 %	0 %	0 %	0 %	Non-Coding
16520	NC_006511	ATG	2	6	4566801	4566806	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
16521	NC_006511	TCG	2	6	4566868	4566873	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
16522	NC_006511	GTTAT	2	10	4568784	4568793	20 %	60 %	20 %	0 %	Non-Coding
16523	NC_006511	CGG	2	6	4568820	4568825	0 %	0 %	66.67 %	33.33 %	Non-Coding
16524	NC_006511	CGC	2	6	4569203	4569208	0 %	0 %	33.33 %	66.67 %	Non-Coding
16525	NC_006511	ACA	2	6	4569242	4569247	66.67 %	0 %	0 %	33.33 %	Non-Coding
16526	NC_006511	A	8	8	4569815	4569822	100 %	0 %	0 %	0 %	Non-Coding
16527	NC_006511	CAA	2	6	4571356	4571361	66.67 %	0 %	0 %	33.33 %	Non-Coding
16528	NC_006511	ATA	2	6	4571387	4571392	66.67 %	33.33 %	0 %	0 %	Non-Coding
16529	NC_006511	T	6	6	4571396	4571401	0 %	100 %	0 %	0 %	Non-Coding
16530	NC_006511	T	8	8	4571421	4571428	0 %	100 %	0 %	0 %	Non-Coding
16531	NC_006511	T	7	7	4571441	4571447	0 %	100 %	0 %	0 %	Non-Coding
16532	NC_006511	ATT	2	6	4571465	4571470	33.33 %	66.67 %	0 %	0 %	Non-Coding
16533	NC_006511	ATTTT	2	10	4571492	4571501	20 %	80 %	0 %	0 %	Non-Coding
16534	NC_006511	TAA	2	6	4571510	4571515	66.67 %	33.33 %	0 %	0 %	Non-Coding
16535	NC_006511	CTG	2	6	4574180	4574185	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
16536	NC_006511	GC	4	8	4575565	4575572	0 %	0 %	50 %	50 %	Non-Coding
16537	NC_006511	CCA	2	6	4577305	4577310	33.33 %	0 %	0 %	66.67 %	Non-Coding
16538	NC_006511	AAAGT	2	10	4579873	4579882	60 %	20 %	20 %	0 %	Non-Coding
16539	NC_006511	CCTG	2	8	4580621	4580628	0 %	25 %	25 %	50 %	Non-Coding
16540	NC_006511	TGC	2	6	4581203	4581208	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
16541	NC_006511	TA	3	6	4581240	4581245	50 %	50 %	0 %	0 %	Non-Coding
16542	NC_006511	ATATT	2	10	4581248	4581257	40 %	60 %	0 %	0 %	Non-Coding
16543	NC_006511	CTT	2	6	4581272	4581277	0 %	66.67 %	0 %	33.33 %	Non-Coding
16544	NC_006511	TCTGT	2	10	4581278	4581287	0 %	60 %	20 %	20 %	Non-Coding
16545	NC_006511	GGC	2	6	4581297	4581302	0 %	0 %	66.67 %	33.33 %	Non-Coding
16546	NC_006511	TAA	2	6	4581389	4581394	66.67 %	33.33 %	0 %	0 %	Non-Coding
16547	NC_006511	AAG	2	6	4581405	4581410	66.67 %	0 %	33.33 %	0 %	Non-Coding
16548	NC_006511	TGA	2	6	4581417	4581422	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
16549	NC_006511	T	6	6	4581446	4581451	0 %	100 %	0 %	0 %	Non-Coding
16550	NC_006511	ATA	2	6	4581453	4581458	66.67 %	33.33 %	0 %	0 %	Non-Coding
16551	NC_006511	TTA	2	6	4581460	4581465	33.33 %	66.67 %	0 %	0 %	Non-Coding
16552	NC_006511	GGA	2	6	4581472	4581477	33.33 %	0 %	66.67 %	0 %	Non-Coding
16553	NC_006511	TTTA	2	8	4581478	4581485	25 %	75 %	0 %	0 %	Non-Coding
16554	NC_006511	ACG	2	6	4581515	4581520	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
16555	NC_006511	ATT	2	6	4582211	4582216	33.33 %	66.67 %	0 %	0 %	Non-Coding
16556	NC_006511	CAA	2	6	4582301	4582306	66.67 %	0 %	0 %	33.33 %	Non-Coding
16557	NC_006511	TGA	2	6	4582383	4582388	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
16558	NC_006511	AGCGA	2	10	4582460	4582469	40 %	0 %	40 %	20 %	Non-Coding
16559	NC_006511	GGA	2	6	4582484	4582489	33.33 %	0 %	66.67 %	0 %	Non-Coding
16560	NC_006511	GA	3	6	4582497	4582502	50 %	0 %	50 %	0 %	Non-Coding
16561	NC_006511	GGCG	2	8	4582518	4582525	0 %	0 %	75 %	25 %	Non-Coding
16562	NC_006511	CGC	2	6	4582545	4582550	0 %	0 %	33.33 %	66.67 %	Non-Coding
16563	NC_006511	CTC	2	6	4582560	4582565	0 %	33.33 %	0 %	66.67 %	Non-Coding
16564	NC_006511	CGG	2	6	4582567	4582572	0 %	0 %	66.67 %	33.33 %	Non-Coding
16565	NC_006511	GAT	2	6	4582621	4582626	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
16566	NC_006511	TCA	2	6	4582663	4582668	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
16567	NC_006511	ATT	2	6	4582718	4582723	33.33 %	66.67 %	0 %	0 %	Non-Coding
16568	NC_006511	AGC	2	6	4582829	4582834	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
16569	NC_006511	TGA	2	6	4582844	4582849	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
16570	NC_006511	AGC	2	6	4582876	4582881	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
16571	NC_006511	T	6	6	4582892	4582897	0 %	100 %	0 %	0 %	Non-Coding
16572	NC_006511	T	6	6	4582936	4582941	0 %	100 %	0 %	0 %	Non-Coding
16573	NC_006511	AGG	2	6	4583069	4583074	33.33 %	0 %	66.67 %	0 %	Non-Coding
16574	NC_006511	CCTG	2	8	4583938	4583945	0 %	25 %	25 %	50 %	Non-Coding
16575	NC_006511	TAA	2	6	4584143	4584148	66.67 %	33.33 %	0 %	0 %	Non-Coding
16576	NC_006511	AT	3	6	4584166	4584171	50 %	50 %	0 %	0 %	Non-Coding
16577	NC_006511	TGA	2	6	4584200	4584205	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
16578	NC_006511	ATC	2	6	4584207	4584212	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
16579	NC_006511	TCA	2	6	4584231	4584236	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
16580	NC_006511	TAA	2	6	4584274	4584279	66.67 %	33.33 %	0 %	0 %	Non-Coding
16581	NC_006511	TGA	2	6	4584283	4584288	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
16582	NC_006511	TAAAT	2	10	4584311	4584320	60 %	40 %	0 %	0 %	Non-Coding
16583	NC_006511	TAAA	2	8	4584326	4584333	75 %	25 %	0 %	0 %	Non-Coding
16584	NC_006511	CAG	2	6	4584334	4584339	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
16585	NC_006511	ATA	2	6	4585224	4585229	66.67 %	33.33 %	0 %	0 %	Non-Coding

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©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.