MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B

Total Repeats: 208

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_004632	CGA	2	6	33	38	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
2	NC_004632	CGG	2	6	80	85	0 %	0 %	66.67 %	33.33 %	Non-Coding
3	NC_004632	AC	3	6	138	143	50 %	0 %	0 %	50 %	Non-Coding
4	NC_004632	TTC	2	6	241	246	0 %	66.67 %	0 %	33.33 %	Non-Coding
5	NC_004632	C	7	7	279	285	0 %	0 %	0 %	100 %	Non-Coding
6	NC_004632	T	6	6	1755	1760	0 %	100 %	0 %	0 %	Non-Coding
7	NC_004632	AAT	2	6	3078	3083	66.67 %	33.33 %	0 %	0 %	Non-Coding
8	NC_004632	CT	3	6	3189	3194	0 %	50 %	0 %	50 %	Non-Coding
9	NC_004632	T	6	6	3208	3213	0 %	100 %	0 %	0 %	Non-Coding
10	NC_004632	TCAT	2	8	3234	3241	25 %	50 %	0 %	25 %	Non-Coding
11	NC_004632	GAA	2	6	3802	3807	66.67 %	0 %	33.33 %	0 %	Non-Coding
12	NC_004632	GAG	2	6	3834	3839	33.33 %	0 %	66.67 %	0 %	Non-Coding
13	NC_004632	AGC	3	9	3910	3918	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
14	NC_004632	ATG	2	6	3937	3942	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
15	NC_004632	CAT	2	6	3955	3960	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
16	NC_004632	CTG	2	6	3983	3988	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
17	NC_004632	CAA	2	6	4050	4055	66.67 %	0 %	0 %	33.33 %	Non-Coding
18	NC_004632	AAC	2	6	4067	4072	66.67 %	0 %	0 %	33.33 %	Non-Coding
19	NC_004632	GATT	2	8	4121	4128	25 %	50 %	25 %	0 %	Non-Coding
20	NC_004632	CAAC	2	8	4205	4212	50 %	0 %	0 %	50 %	Non-Coding
21	NC_004632	GAT	2	6	4238	4243	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
22	NC_004632	T	6	6	4303	4308	0 %	100 %	0 %	0 %	Non-Coding
23	NC_004632	TAAG	2	8	6180	6187	50 %	25 %	25 %	0 %	Non-Coding
24	NC_004632	TGC	2	6	6210	6215	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
25	NC_004632	TGA	2	6	6267	6272	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
26	NC_004632	ACC	2	6	6283	6288	33.33 %	0 %	0 %	66.67 %	Non-Coding
27	NC_004632	GCC	2	6	6297	6302	0 %	0 %	33.33 %	66.67 %	Non-Coding
28	NC_004632	GCAAGC	2	12	6342	6353	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
29	NC_004632	CGC	2	6	6359	6364	0 %	0 %	33.33 %	66.67 %	Non-Coding
30	NC_004632	CAA	2	6	6374	6379	66.67 %	0 %	0 %	33.33 %	Non-Coding
31	NC_004632	CG	3	6	6475	6480	0 %	0 %	50 %	50 %	Non-Coding
32	NC_004632	TCA	2	6	6598	6603	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
33	NC_004632	CGT	2	6	6607	6612	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
34	NC_004632	TTCC	2	8	6683	6690	0 %	50 %	0 %	50 %	Non-Coding
35	NC_004632	GCA	2	6	6748	6753	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
36	NC_004632	GA	3	6	6771	6776	50 %	0 %	50 %	0 %	Non-Coding
37	NC_004632	CTA	2	6	6826	6831	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
38	NC_004632	ATT	2	6	6840	6845	33.33 %	66.67 %	0 %	0 %	Non-Coding
39	NC_004632	TAGGTG	2	12	6891	6902	16.67 %	33.33 %	50 %	0 %	Non-Coding
40	NC_004632	CGG	2	6	6946	6951	0 %	0 %	66.67 %	33.33 %	Non-Coding
41	NC_004632	AGGTG	2	10	6984	6993	20 %	20 %	60 %	0 %	Non-Coding
42	NC_004632	CGG	2	6	7017	7022	0 %	0 %	66.67 %	33.33 %	Non-Coding
43	NC_004632	G	7	7	7120	7126	0 %	0 %	100 %	0 %	Non-Coding
44	NC_004632	TGGT	2	8	7127	7134	0 %	50 %	50 %	0 %	Non-Coding
45	NC_004632	ACG	2	6	7414	7419	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
46	NC_004632	CTAC	2	8	7423	7430	25 %	25 %	0 %	50 %	Non-Coding
47	NC_004632	TGGG	2	8	7457	7464	0 %	25 %	75 %	0 %	Non-Coding
48	NC_004632	ACC	2	6	7467	7472	33.33 %	0 %	0 %	66.67 %	Non-Coding
49	NC_004632	AGT	2	6	7491	7496	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
50	NC_004632	TCG	3	9	7507	7515	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
51	NC_004632	CCA	2	6	7531	7536	33.33 %	0 %	0 %	66.67 %	Non-Coding
52	NC_004632	TCC	2	6	8062	8067	0 %	33.33 %	0 %	66.67 %	Non-Coding
53	NC_004632	AAT	2	6	8364	8369	66.67 %	33.33 %	0 %	0 %	Non-Coding
54	NC_004632	CTG	2	6	8401	8406	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
55	NC_004632	CAT	2	6	9456	9461	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
56	NC_004632	CTG	2	6	11007	11012	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
57	NC_004632	GAC	2	6	11032	11037	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
58	NC_004632	CGA	2	6	11049	11054	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
59	NC_004632	CA	3	6	11218	11223	50 %	0 %	0 %	50 %	Non-Coding
60	NC_004632	TGC	2	6	11267	11272	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
61	NC_004632	TGC	2	6	11381	11386	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
62	NC_004632	GCA	2	6	11489	11494	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
63	NC_004632	ATG	2	6	11554	11559	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
64	NC_004632	GT	3	6	11593	11598	0 %	50 %	50 %	0 %	Non-Coding
65	NC_004632	CCA	2	6	11687	11692	33.33 %	0 %	0 %	66.67 %	Non-Coding
66	NC_004632	TGC	2	6	11777	11782	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
67	NC_004632	GCCA	2	8	11795	11802	25 %	0 %	25 %	50 %	Non-Coding
68	NC_004632	CGAT	2	8	11849	11856	25 %	25 %	25 %	25 %	Non-Coding
69	NC_004632	GA	3	6	11883	11888	50 %	0 %	50 %	0 %	Non-Coding
70	NC_004632	GTCT	2	8	12108	12115	0 %	50 %	25 %	25 %	Non-Coding
71	NC_004632	GCG	2	6	12147	12152	0 %	0 %	66.67 %	33.33 %	Non-Coding
72	NC_004632	AGCTTC	2	12	12358	12369	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
73	NC_004632	TCG	2	6	12489	12494	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
74	NC_004632	CGC	2	6	12534	12539	0 %	0 %	33.33 %	66.67 %	Non-Coding
75	NC_004632	CGC	2	6	13656	13661	0 %	0 %	33.33 %	66.67 %	Non-Coding
76	NC_004632	CGA	2	6	13677	13682	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
77	NC_004632	ATG	2	6	13711	13716	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
78	NC_004632	GCG	2	6	13734	13739	0 %	0 %	66.67 %	33.33 %	Non-Coding
79	NC_004632	T	7	7	13753	13759	0 %	100 %	0 %	0 %	Non-Coding
80	NC_004632	TAG	2	6	13776	13781	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
81	NC_004632	CCT	2	6	13907	13912	0 %	33.33 %	0 %	66.67 %	Non-Coding
82	NC_004632	GAAT	2	8	13989	13996	50 %	25 %	25 %	0 %	Non-Coding
83	NC_004632	ATG	2	6	14141	14146	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
84	NC_004632	T	6	6	14202	14207	0 %	100 %	0 %	0 %	Non-Coding
85	NC_004632	CTT	2	6	14251	14256	0 %	66.67 %	0 %	33.33 %	Non-Coding
86	NC_004632	TCCC	2	8	14278	14285	0 %	25 %	0 %	75 %	Non-Coding
87	NC_004632	AT	3	6	14309	14314	50 %	50 %	0 %	0 %	Non-Coding
88	NC_004632	GGACA	2	10	14343	14352	40 %	0 %	40 %	20 %	Non-Coding
89	NC_004632	GCC	2	6	14372	14377	0 %	0 %	33.33 %	66.67 %	Non-Coding
90	NC_004632	GAAT	2	8	14481	14488	50 %	25 %	25 %	0 %	Non-Coding
91	NC_004632	A	6	6	14511	14516	100 %	0 %	0 %	0 %	Non-Coding
92	NC_004632	A	7	7	14529	14535	100 %	0 %	0 %	0 %	Non-Coding
93	NC_004632	AGG	2	6	14552	14557	33.33 %	0 %	66.67 %	0 %	Non-Coding
94	NC_004632	AAATC	2	10	14590	14599	60 %	20 %	0 %	20 %	Non-Coding
95	NC_004632	CAT	2	6	14617	14622	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
96	NC_004632	GC	3	6	14632	14637	0 %	0 %	50 %	50 %	Non-Coding
97	NC_004632	CT	3	6	14649	14654	0 %	50 %	0 %	50 %	Non-Coding
98	NC_004632	CTC	2	6	15482	15487	0 %	33.33 %	0 %	66.67 %	Non-Coding
99	NC_004632	CCAT	2	8	15490	15497	25 %	25 %	0 %	50 %	Non-Coding
100	NC_004632	CGC	2	6	15521	15526	0 %	0 %	33.33 %	66.67 %	Non-Coding
101	NC_004632	CGA	2	6	15620	15625	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
102	NC_004632	ATTG	2	8	15685	15692	25 %	50 %	25 %	0 %	Non-Coding
103	NC_004632	GAA	2	6	15970	15975	66.67 %	0 %	33.33 %	0 %	Non-Coding
104	NC_004632	GATC	2	8	15978	15985	25 %	25 %	25 %	25 %	Non-Coding
105	NC_004632	GAT	2	6	15996	16001	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
106	NC_004632	CGG	2	6	16010	16015	0 %	0 %	66.67 %	33.33 %	Non-Coding
107	NC_004632	GAA	2	6	16061	16066	66.67 %	0 %	33.33 %	0 %	Non-Coding
108	NC_004632	AGTCG	2	10	16091	16100	20 %	20 %	40 %	20 %	Non-Coding
109	NC_004632	GAT	2	6	16911	16916	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
110	NC_004632	A	6	6	17117	17122	100 %	0 %	0 %	0 %	Non-Coding
111	NC_004632	AAT	2	6	17251	17256	66.67 %	33.33 %	0 %	0 %	Non-Coding
112	NC_004632	CTG	2	6	17263	17268	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
113	NC_004632	GAT	2	6	17306	17311	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
114	NC_004632	CGC	2	6	17360	17365	0 %	0 %	33.33 %	66.67 %	Non-Coding
115	NC_004632	TGC	2	6	17481	17486	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
116	NC_004632	TGGTT	2	10	17507	17516	0 %	60 %	40 %	0 %	Non-Coding
117	NC_004632	GGA	2	6	17533	17538	33.33 %	0 %	66.67 %	0 %	Non-Coding
118	NC_004632	TCA	2	6	17670	17675	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
119	NC_004632	TGC	2	6	17703	17708	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
120	NC_004632	GGT	2	6	17719	17724	0 %	33.33 %	66.67 %	0 %	Non-Coding
121	NC_004632	CGA	2	6	17730	17735	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
122	NC_004632	TCAT	2	8	17736	17743	25 %	50 %	0 %	25 %	Non-Coding
123	NC_004632	GAA	2	6	17800	17805	66.67 %	0 %	33.33 %	0 %	Non-Coding
124	NC_004632	TTC	2	6	17819	17824	0 %	66.67 %	0 %	33.33 %	Non-Coding
125	NC_004632	TGG	2	6	17877	17882	0 %	33.33 %	66.67 %	0 %	Non-Coding
126	NC_004632	GCG	2	6	17888	17893	0 %	0 %	66.67 %	33.33 %	Non-Coding
127	NC_004632	GAT	2	6	18007	18012	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
128	NC_004632	GCCC	2	8	18026	18033	0 %	0 %	25 %	75 %	Non-Coding
129	NC_004632	GGCT	2	8	18183	18190	0 %	25 %	50 %	25 %	Non-Coding
130	NC_004632	GCT	2	6	18253	18258	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
131	NC_004632	T	7	7	18371	18377	0 %	100 %	0 %	0 %	Non-Coding
132	NC_004632	CCTT	2	8	18423	18430	0 %	50 %	0 %	50 %	Non-Coding
133	NC_004632	ACC	2	6	19295	19300	33.33 %	0 %	0 %	66.67 %	Non-Coding
134	NC_004632	GTT	2	6	19338	19343	0 %	66.67 %	33.33 %	0 %	Non-Coding
135	NC_004632	GTG	2	6	19371	19376	0 %	33.33 %	66.67 %	0 %	Non-Coding
136	NC_004632	ACG	2	6	19393	19398	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
137	NC_004632	T	7	7	19459	19465	0 %	100 %	0 %	0 %	Non-Coding
138	NC_004632	AGC	2	6	20517	20522	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
139	NC_004632	TTAG	2	8	20588	20595	25 %	50 %	25 %	0 %	Non-Coding
140	NC_004632	G	6	6	20611	20616	0 %	0 %	100 %	0 %	Non-Coding
141	NC_004632	AGC	2	6	20721	20726	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
142	NC_004632	GTC	2	6	20745	20750	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
143	NC_004632	T	6	6	20816	20821	0 %	100 %	0 %	0 %	Non-Coding
144	NC_004632	CTT	2	6	20831	20836	0 %	66.67 %	0 %	33.33 %	Non-Coding
145	NC_004632	T	6	6	20844	20849	0 %	100 %	0 %	0 %	Non-Coding
146	NC_004632	CGT	2	6	20884	20889	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
147	NC_004632	GCG	3	9	20892	20900	0 %	0 %	66.67 %	33.33 %	Non-Coding
148	NC_004632	TGAC	2	8	20937	20944	25 %	25 %	25 %	25 %	Non-Coding
149	NC_004632	GC	3	6	20995	21000	0 %	0 %	50 %	50 %	Non-Coding
150	NC_004632	CAG	2	6	21016	21021	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
151	NC_004632	GGCT	2	8	21041	21048	0 %	25 %	50 %	25 %	Non-Coding
152	NC_004632	TA	3	6	21797	21802	50 %	50 %	0 %	0 %	Non-Coding
153	NC_004632	TATGCA	2	12	21876	21887	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
154	NC_004632	ATC	2	6	22107	22112	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
155	NC_004632	GCA	2	6	22163	22168	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
156	NC_004632	GAT	2	6	22759	22764	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
157	NC_004632	CA	3	6	22792	22797	50 %	0 %	0 %	50 %	Non-Coding
158	NC_004632	TAAAA	2	10	23747	23756	80 %	20 %	0 %	0 %	Non-Coding
159	NC_004632	CTT	2	6	24455	24460	0 %	66.67 %	0 %	33.33 %	Non-Coding
160	NC_004632	GTCTG	2	10	24464	24473	0 %	40 %	40 %	20 %	Non-Coding
161	NC_004632	TCGCT	2	10	25236	25245	0 %	40 %	20 %	40 %	Non-Coding
162	NC_004632	AAGCA	2	10	25365	25374	60 %	0 %	20 %	20 %	Non-Coding
163	NC_004632	TGA	2	6	25380	25385	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
164	NC_004632	GCT	2	6	25423	25428	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
165	NC_004632	A	6	6	25772	25777	100 %	0 %	0 %	0 %	Non-Coding
166	NC_004632	A	6	6	26902	26907	100 %	0 %	0 %	0 %	Non-Coding
167	NC_004632	T	6	6	26925	26930	0 %	100 %	0 %	0 %	Non-Coding
168	NC_004632	ACC	2	6	27940	27945	33.33 %	0 %	0 %	66.67 %	Non-Coding
169	NC_004632	ACGG	2	8	28031	28038	25 %	0 %	50 %	25 %	Non-Coding
170	NC_004632	AGTT	2	8	28106	28113	25 %	50 %	25 %	0 %	Non-Coding
171	NC_004632	GCC	2	6	30431	30436	0 %	0 %	33.33 %	66.67 %	Non-Coding
172	NC_004632	TCG	2	6	30788	30793	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
173	NC_004632	GTC	2	6	30799	30804	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
174	NC_004632	AG	3	6	30817	30822	50 %	0 %	50 %	0 %	Non-Coding
175	NC_004632	CAG	2	6	30842	30847	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
176	NC_004632	GCC	2	6	32846	32851	0 %	0 %	33.33 %	66.67 %	Non-Coding
177	NC_004632	G	6	6	32863	32868	0 %	0 %	100 %	0 %	Non-Coding
178	NC_004632	TCG	2	6	32922	32927	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
179	NC_004632	TGC	2	6	33060	33065	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
180	NC_004632	TCC	2	6	33148	33153	0 %	33.33 %	0 %	66.67 %	Non-Coding
181	NC_004632	ACG	2	6	33329	33334	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
182	NC_004632	GCAT	2	8	33377	33384	25 %	25 %	25 %	25 %	Non-Coding
183	NC_004632	TCA	2	6	33456	33461	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
184	NC_004632	TGT	2	6	33462	33467	0 %	66.67 %	33.33 %	0 %	Non-Coding
185	NC_004632	GAAAA	2	10	36736	36745	80 %	0 %	20 %	0 %	Non-Coding
186	NC_004632	ATTTAC	2	12	36765	36776	33.33 %	50 %	0 %	16.67 %	Non-Coding
187	NC_004632	TTTG	2	8	36784	36791	0 %	75 %	25 %	0 %	Non-Coding
188	NC_004632	CTG	2	6	36821	36826	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
189	NC_004632	CAC	2	6	36871	36876	33.33 %	0 %	0 %	66.67 %	Non-Coding
190	NC_004632	GAG	2	6	37774	37779	33.33 %	0 %	66.67 %	0 %	Non-Coding
191	NC_004632	AGGGA	2	10	42303	42312	40 %	0 %	60 %	0 %	Non-Coding
192	NC_004632	GCA	2	6	42574	42579	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
193	NC_004632	GA	3	6	42914	42919	50 %	0 %	50 %	0 %	Non-Coding
194	NC_004632	TCA	2	6	47980	47985	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
195	NC_004632	TGC	2	6	47993	47998	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
196	NC_004632	CCT	2	6	48729	48734	0 %	33.33 %	0 %	66.67 %	Non-Coding
197	NC_004632	TTA	2	6	52468	52473	33.33 %	66.67 %	0 %	0 %	Non-Coding
198	NC_004632	CCT	2	6	52893	52898	0 %	33.33 %	0 %	66.67 %	Non-Coding
199	NC_004632	CCTCC	2	10	52923	52932	0 %	20 %	0 %	80 %	Non-Coding
200	NC_004632	GGT	2	6	53262	53267	0 %	33.33 %	66.67 %	0 %	Non-Coding
201	NC_004632	CA	3	6	53273	53278	50 %	0 %	0 %	50 %	Non-Coding
202	NC_004632	CTGG	2	8	53306	53313	0 %	25 %	50 %	25 %	Non-Coding
203	NC_004632	TCC	2	6	53390	53395	0 %	33.33 %	0 %	66.67 %	Non-Coding
204	NC_004632	CGG	2	6	53449	53454	0 %	0 %	66.67 %	33.33 %	Non-Coding
205	NC_004632	TCC	2	6	53514	53519	0 %	33.33 %	0 %	66.67 %	Non-Coding
206	NC_004632	A	6	6	63503	63508	100 %	0 %	0 %	0 %	Non-Coding
207	NC_004632	CTTTA	2	10	63521	63530	20 %	60 %	0 %	20 %	Non-Coding
208	NC_004632	TTG	2	6	67426	67431	0 %	66.67 %	33.33 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.