MICAS: Microsatellite Analysis Server 3.0
An Online Repository of All Prokaryotic Microsatellites
Home
About MICAS
Browse
Search
Compare
Extract SSRs
Team
Admin Login
MICAS Advanced Search
Browse Genome By Alphabetical Order:
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
R
S
T
U
V
W
X
Y
Z
Select A Genome:
Echinicola vietnamensis DSM 17526 chromosome (Bacteria)
Edwardsiella ictaluri 93-146 chromosome (Bacteria)
Edwardsiella tarda C07-087 (Bacteria)
Edwardsiella tarda EIB202 chromosome (Bacteria)
Edwardsiella tarda EIB202 plasmid pEIB202 (Bacteria)
Edwardsiella tarda FL6-60 chromosome (Bacteria)
Edwardsiella tarda FL6-60 plasmid pFL6-60 (Bacteria)
Eggerthella lenta DSM 2243 chromosome (Bacteria)
Eggerthella sp. YY7918 (Bacteria)
Ehrlichia canis str. Jake chromosome (Bacteria)
Ehrlichia chaffeensis str. Arkansas (Bacteria)
Ehrlichia ruminantium str. Gardel (Bacteria)
Ehrlichia ruminantium str. Welgevonden (Bacteria)
Ehrlichia ruminantium str. Welgevonden chromosome (Bacteria)
Elusimicrobium minutum Pei191 chromosome (Bacteria)
Emticicia oligotrophica DSM 17448 chromosome (Bacteria)
Emticicia oligotrophica DSM 17448 plasmid pEMTOL01 (Bacteria)
Emticicia oligotrophica DSM 17448 plasmid pEMTOL02 (Bacteria)
Emticicia oligotrophica DSM 17448 plasmid pEMTOL03 (Bacteria)
Emticicia oligotrophica DSM 17448 plasmid pEMTOL04 (Bacteria)
Emticicia oligotrophica DSM 17448 plasmid pEMTOL05 (Bacteria)
Enterobacter aerogenes EA1509E (Bacteria)
Enterobacter aerogenes EA1509E plasmid pEA1509_A (Bacteria)
Enterobacter aerogenes EA1509E plasmid pEA1509_B (Bacteria)
Enterobacter aerogenes KCTC 2190 chromosome (Bacteria)
Enterobacter asburiae LF7a chromosome (Bacteria)
Enterobacter asburiae LF7a plasmid pENTAS01 (Bacteria)
Enterobacter asburiae LF7a plasmid pENTAS02 (Bacteria)
Enterobacter cloacae EcWSU1 chromosome (Bacteria)
Enterobacter cloacae EcWSU1 plasmid pEcWSU1_A (Bacteria)
Enterobacter cloacae SCF1 chromosome (Bacteria)
Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome (Bacteria)
Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A (Bacteria)
Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_B (Bacteria)
Enterobacter cloacae subsp. cloacae ENHKU01 chromosome (Bacteria)
Enterobacter cloacae subsp. cloacae NCTC 9394 draft genome (Bacteria)
Enterobacter cloacae subsp. dissolvens SDM chromosome (Bacteria)
Enterobacter sp. 638 (Bacteria)
Enterobacter sp. 638 plasmid pENTE01 (Bacteria)
Enterobacter sp. R4-368 (Bacteria)
Enterobacter sp. R4-368 plasmid pENT01 (Bacteria)
Enterobacteriaceae bacterium strain FGI 57 (Bacteria)
Enterococcus casseliflavus EC20 (Bacteria)
Enterococcus faecalis D32 chromosome (Bacteria)
Enterococcus faecalis D32 plasmid EFD32pA (Bacteria)
Enterococcus faecalis D32 plasmid EFD32pB (Bacteria)
Enterococcus faecalis OG1RF chromosome (Bacteria)
Enterococcus faecalis str. Symbioflor 1 (Bacteria)
Enterococcus faecalis V583 chromosome (Bacteria)
Enterococcus faecalis V583 plasmid pTEF1 (Bacteria)
Enterococcus faecalis V583 plasmid pTEF2 (Bacteria)
Enterococcus faecalis V583 plasmid pTEF3 (Bacteria)
Enterococcus faecium Aus0004 chromosome (Bacteria)
Enterococcus faecium Aus0004 plasmid AUS0004_p1 (Bacteria)
Enterococcus faecium Aus0004 plasmid AUS0004_p2 (Bacteria)
Enterococcus faecium Aus0004 plasmid AUS0004_p3 (Bacteria)
Enterococcus faecium Aus0085 (Bacteria)
Enterococcus faecium Aus0085 plasmid p1 (Bacteria)
Enterococcus faecium Aus0085 plasmid p2 (Bacteria)
Enterococcus faecium Aus0085 plasmid p3 (Bacteria)
Enterococcus faecium Aus0085 plasmid p4 (Bacteria)
Enterococcus faecium Aus0085 plasmid p5 (Bacteria)
Enterococcus faecium Aus0085 plasmid p6 (Bacteria)
Enterococcus faecium DO chromosome (Bacteria)
Enterococcus faecium DO plasmid 1 (Bacteria)
Enterococcus faecium DO plasmid 2 (Bacteria)
Enterococcus faecium DO plasmid 3 (Bacteria)
Enterococcus faecium NRRL B-2354 (Bacteria)
Enterococcus faecium NRRL B-2354 plasmid pNB2354_1 (Bacteria)
Enterococcus hirae ATCC 9790 chromosome (Bacteria)
Enterococcus hirae ATCC 9790 plasmid pTG9790 (Bacteria)
Enterococcus sp. 7L76 draft genome (Bacteria)
Erwinia amylovora ATCC 49946 chromosome (Bacteria)
Erwinia amylovora ATCC 49946 plasmid 1 (Bacteria)
Erwinia amylovora ATCC 49946 plasmid 2 (Bacteria)
Erwinia amylovora CFBP1430 chromosome (Bacteria)
Erwinia amylovora CFBP1430 plasmid pEA29 (Bacteria)
Erwinia billingiae Eb661 chromosome (Bacteria)
Erwinia billingiae Eb661 plasmid pEB102 (Bacteria)
Erwinia billingiae Eb661 plasmid pEB170 (Bacteria)
Erwinia pyrifoliae DSM 12163 (Bacteria)
Erwinia pyrifoliae DSM 12163 plasmid pEP2.6 (Bacteria)
Erwinia pyrifoliae DSM 12163 plasmid pEP3 (Bacteria)
Erwinia pyrifoliae DSM 12163 plasmid pEP36 (Bacteria)
Erwinia pyrifoliae DSM 12163 plasmid pEp5 (Bacteria)
Erwinia pyrifoliae Ep1/96 chromosome (Bacteria)
Erwinia pyrifoliae Ep1/96 plasmid pEP03 (Bacteria)
Erwinia pyrifoliae Ep1/96 plasmid pEP05 (Bacteria)
Erwinia pyrifoliae Ep1/96 plasmid pEP2.6 (Bacteria)
Erwinia pyrifoliae Ep1/96 plasmid pEP36 (Bacteria)
Erwinia sp. Ejp617 chromosome (Bacteria)
Erwinia sp. Ejp617 plasmid pJE01 (Bacteria)
Erwinia sp. Ejp617 plasmid pJE02 (Bacteria)
Erwinia sp. Ejp617 plasmid pJE03 (Bacteria)
Erwinia sp. Ejp617 plasmid pJE04 (Bacteria)
Erwinia sp. Ejp617 plasmid pJE05 (Bacteria)
Erwinia tasmaniensis Et1/99 chromosome (Bacteria)
Erwinia tasmaniensis Et1/99 plasmid pET09 (Bacteria)
Erwinia tasmaniensis Et1/99 plasmid pET35 (Bacteria)
Erwinia tasmaniensis Et1/99 plasmid pET45 (Bacteria)
Erwinia tasmaniensis Et1/99 plasmid pET46 (Bacteria)
Erwinia tasmaniensis Et1/99 plasmid pET49 (Bacteria)
Erysipelothrix rhusiopathiae str. Fujisawa chromosome (Bacteria)
Erysipelothrix rhusiopathiae SY1027 (Bacteria)
Erythrobacter litoralis HTCC2594 chromosome (Bacteria)
Escherichia blattae DSM 4481 chromosome (Bacteria)
Escherichia coli 042 (Bacteria)
Escherichia coli 042 plasmid pAA (Bacteria)
Escherichia coli 536 (Bacteria)
Escherichia coli 55989 chromosome (Bacteria)
Escherichia coli ABU 83972 chromosome (Bacteria)
Escherichia coli ABU 83972 plasmid pABU (Bacteria)
Escherichia coli APEC O1 chromosome (Bacteria)
Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM (Bacteria)
Escherichia coli APEC O1 plasmid pAPEC-O1-R (Bacteria)
Escherichia coli APEC O78 (Bacteria)
Escherichia coli ATCC 8739 chromosome (Bacteria)
Escherichia coli B str. REL606 chromosome (Bacteria)
Escherichia coli BL21(DE3) chromosome (Bacteria)
Escherichia coli BW2952 chromosome (Bacteria)
Escherichia coli CFT073 chromosome (Bacteria)
Escherichia coli DH1 (Bacteria)
Escherichia coli DH1 chromosome (Bacteria)
Escherichia coli E24377A chromosome (Bacteria)
Escherichia coli E24377A plasmid pETEC_35 (Bacteria)
Escherichia coli E24377A plasmid pETEC_5 (Bacteria)
Escherichia coli E24377A plasmid pETEC_6 (Bacteria)
Escherichia coli E24377A plasmid pETEC_73 (Bacteria)
Escherichia coli E24377A plasmid pETEC_74 (Bacteria)
Escherichia coli E24377A plasmid pETEC_80 (Bacteria)
Escherichia coli ED1a chromosome (Bacteria)
Escherichia coli ETEC H10407 (Bacteria)
Escherichia coli ETEC H10407 plasmid p52 (Bacteria)
Escherichia coli ETEC H10407 plasmid p58 (Bacteria)
Escherichia coli ETEC H10407 plasmid p666 (Bacteria)
Escherichia coli ETEC H10407 plasmid p948 (Bacteria)
Escherichia coli HS (Bacteria)
Escherichia coli IAI1 chromosome (Bacteria)
Escherichia coli IAI39 chromosome (Bacteria)
Escherichia coli IHE3034 chromosome (Bacteria)
Escherichia coli JJ1886 (Bacteria)
Escherichia coli JJ1886 plasmid pJJ1886_1 (Bacteria)
Escherichia coli JJ1886 plasmid pJJ1886_2 (Bacteria)
Escherichia coli JJ1886 plasmid pJJ1886_3 (Bacteria)
Escherichia coli JJ1886 plasmid pJJ1886_4 (Bacteria)
Escherichia coli JJ1886 plasmid pJJ1886_5 (Bacteria)
Escherichia coli KO11FL chromosome (Bacteria)
Escherichia coli KO11FL chromosome (Bacteria)
Escherichia coli KO11FL plasmid pEKO1101 (Bacteria)
Escherichia coli KO11FL plasmid pEKO1102 (Bacteria)
Escherichia coli KO11FL plasmid pRK2 (Bacteria)
Escherichia coli LF82 (Bacteria)
Escherichia coli LY180 (Bacteria)
Escherichia coli NA114 chromosome (Bacteria)
Escherichia coli O103:H2 str. 12009 (Bacteria)
Escherichia coli O103:H2 str. 12009 plasmid pO103 (Bacteria)
Escherichia coli O104:H4 str. 2009EL-2050 chromosome (Bacteria)
Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50 (Bacteria)
Escherichia coli O104:H4 str. 2009EL-2050 plasmid pAA-09EL50 (Bacteria)
Escherichia coli O104:H4 str. 2009EL-2050 plasmid pG-09EL50 (Bacteria)
Escherichia coli O104:H4 str. 2009EL-2071 chromosome (Bacteria)
Escherichia coli O104:H4 str. 2009EL-2071 plasmid pAA-09EL71 (Bacteria)
Escherichia coli O104:H4 str. 2009EL-2071 plasmid pG-09EL71 (Bacteria)
Escherichia coli O104:H4 str. 2011C-3493 chromosome (Bacteria)
Escherichia coli O104:H4 str. 2011C-3493 plasmid pAA-EA11 (Bacteria)
Escherichia coli O104:H4 str. 2011C-3493 plasmid pESBL-EA11 (Bacteria)
Escherichia coli O104:H4 str. 2011C-3493 plasmid pG-EA11 (Bacteria)
Escherichia coli O111:H- str. 11128 (Bacteria)
Escherichia coli O111:H- str. 11128 plasmid pO111_1 (Bacteria)
Escherichia coli O111:H- str. 11128 plasmid pO111_2 (Bacteria)
Escherichia coli O111:H- str. 11128 plasmid pO111_3 (Bacteria)
Escherichia coli O111:H- str. 11128 plasmid pO111_4 (Bacteria)
Escherichia coli O111:H- str. 11128 plasmid pO111_5 (Bacteria)
Escherichia coli O127:H6 str. E2348/69 chromosome (Bacteria)
Escherichia coli O127:H6 str. E2348/69 plasmid pE2348-2 (Bacteria)
Escherichia coli O127:H6 str. E2348/69 plasmid pMAR2 (Bacteria)
Escherichia coli O157:H7 EDL933 plasmid pO157 (Bacteria)
Escherichia coli O157:H7 str. EC4115 chromosome (Bacteria)
Escherichia coli O157:H7 str. EC4115 plasmid pEC4115 (Bacteria)
Escherichia coli O157:H7 str. EC4115 plasmid pO157 (Bacteria)
Escherichia coli O157:H7 str. EDL933 chromosome (Bacteria)
Escherichia coli O157:H7 str. Sakai chromosome (Bacteria)
Escherichia coli O157:H7 str. Sakai plasmid pO157 (Bacteria)
Escherichia coli O157:H7 str. Sakai plasmid pOSAK1 (Bacteria)
Escherichia coli O157:H7 str. TW14359 chromosome (Bacteria)
Escherichia coli O157:H7 str. TW14359 plasmid pO157 (Bacteria)
Escherichia coli O26:H11 str. 11368 chromosome (Bacteria)
Escherichia coli O26:H11 str. 11368 plasmid pO26_1 (Bacteria)
Escherichia coli O26:H11 str. 11368 plasmid pO26_2 (Bacteria)
Escherichia coli O26:H11 str. 11368 plasmid pO26_3 (Bacteria)
Escherichia coli O26:H11 str. 11368 plasmid pO26_4 (Bacteria)
Escherichia coli O55:H7 str. CB9615 chromosome (Bacteria)
Escherichia coli O55:H7 str. CB9615 plasmid pO55 (Bacteria)
Escherichia coli O55:H7 str. RM12579 chromosome (Bacteria)
Escherichia coli O55:H7 str. RM12579 plasmid p12579_1 (Bacteria)
Escherichia coli O55:H7 str. RM12579 plasmid p12579_2 (Bacteria)
Escherichia coli O55:H7 str. RM12579 plasmid p12579_3 (Bacteria)
Escherichia coli O55:H7 str. RM12579 plasmid p12579_4 (Bacteria)
Escherichia coli O55:H7 str. RM12579 plasmid p12579_5 (Bacteria)
Escherichia coli O7:K1 str. CE10 chromosome (Bacteria)
Escherichia coli O7:K1 str. CE10 plasmid pCE10A (Bacteria)
Escherichia coli O7:K1 str. CE10 plasmid pCE10B (Bacteria)
Escherichia coli O7:K1 str. CE10 plasmid pCE10C (Bacteria)
Escherichia coli O7:K1 str. CE10 plasmid pCE10D (Bacteria)
Escherichia coli O83:H1 str. NRG 857C chromosome (Bacteria)
Escherichia coli O83:H1 str. NRG 857C plasmid pO83_CORR (Bacteria)
Escherichia coli P12b chromosome (Bacteria)
Escherichia coli PMV-1 main chromosome (Bacteria)
Escherichia coli PMV-1 pHUSEC411like plasmid (Bacteria)
Escherichia coli S88 chromosome (Bacteria)
Escherichia coli S88 plasmid pECOS88 (Bacteria)
Escherichia coli SE11 chromosome (Bacteria)
Escherichia coli SE11 plasmid pSE11-1 (Bacteria)
Escherichia coli SE11 plasmid pSE11-2 (Bacteria)
Escherichia coli SE11 plasmid pSE11-3 (Bacteria)
Escherichia coli SE11 plasmid pSE11-4 (Bacteria)
Escherichia coli SE11 plasmid pSE11-5 (Bacteria)
Escherichia coli SE11 plasmid pSE11-6 (Bacteria)
Escherichia coli SE15 (Bacteria)
Escherichia coli SE15 plasmid pECSF1 (Bacteria)
Escherichia coli SMS-3-5 chromosome (Bacteria)
Escherichia coli SMS-3-5 plasmid pSMS35_130 (Bacteria)
Escherichia coli SMS-3-5 plasmid pSMS35_3 (Bacteria)
Escherichia coli SMS-3-5 plasmid pSMS35_4 (Bacteria)
Escherichia coli SMS-3-5 plasmid pSMS35_8 (Bacteria)
Escherichia coli str. K-12 substr. DH10B chromosome (Bacteria)
Escherichia coli str. K-12 substr. MDS42 DNA (Bacteria)
Escherichia coli str. K-12 substr. MG1655 (Bacteria)
Escherichia coli str. K-12 substr. W3110 (Bacteria)
Escherichia coli UM146 chromosome (Bacteria)
Escherichia coli UM146 plasmid pUM146 (Bacteria)
Escherichia coli UMN026 chromosome (Bacteria)
Escherichia coli UMN026 plasmid p1ESCUM (Bacteria)
Escherichia coli UMN026 plasmid p2ESCUM (Bacteria)
Escherichia coli UMNK88 chromosome (Bacteria)
Escherichia coli UMNK88 plasmid pUMNK88 (Bacteria)
Escherichia coli UMNK88 plasmid pUMNK88_91 (Bacteria)
Escherichia coli UMNK88 plasmid pUMNK88_Ent (Bacteria)
Escherichia coli UMNK88 plasmid pUMNK88_Hly (Bacteria)
Escherichia coli UMNK88 plasmid pUMNK88_K88 (Bacteria)
Escherichia coli UTI89 chromosome (Bacteria)
Escherichia coli UTI89 plasmid pUTI89 (Bacteria)
Escherichia coli W chromosome (Bacteria)
Escherichia coli W chromosome (Bacteria)
Escherichia coli W plasmid pRK1 (Bacteria)
Escherichia coli W plasmid pRK1 (Bacteria)
Escherichia coli W plasmid pRK2 (Bacteria)
Escherichia coli W plasmid pRK2 (Bacteria)
Escherichia coli Xuzhou21 chromosome (Bacteria)
Escherichia coli Xuzhou21 plasmid pO157 (Bacteria)
Escherichia coli Xuzhou21 plasmid pO157_Sal (Bacteria)
Escherichia fergusonii ATCC 35469 chromosome (Bacteria)
Escherichia fergusonii ATCC 35469 plasmid pEFER (Bacteria)
Ethanoligenens harbinense YUAN-3 chromosome (Bacteria)
Eubacterium cylindroides T2-87 draft genome (Bacteria)
Eubacterium eligens ATCC 27750 chromosome (Bacteria)
Eubacterium eligens ATCC 27750 plasmid unnamed (Bacteria)
Eubacterium eligens ATCC 27750 plasmid unnamed (Bacteria)
Eubacterium limosum KIST612 chromosome (Bacteria)
Eubacterium rectale ATCC 33656 (Bacteria)
Eubacterium rectale DSM 17629 draft genome (Bacteria)
Eubacterium rectale M104/1 draft genome (Bacteria)
Eubacterium siraeum 70/3 draft genome (Bacteria)
Eubacterium siraeum V10Sc8a draft genome (Bacteria)
Exiguobacterium antarcticum B7 chromosome (Bacteria)
Exiguobacterium sibiricum 255-15 chromosome (Bacteria)
Exiguobacterium sibiricum 255-15 plasmid pEXIG01 (Bacteria)
Exiguobacterium sibiricum 255-15 plasmid pEXIG02 (Bacteria)
Exiguobacterium sp. AT1b chromosome (Bacteria)
Exiguobacterium sp. MH3 (Bacteria)
Filter / Search Options:
Repeat Size:
All
Mono
Di
Tri
Tetra
Penta
Hexa
Repeat Pattern :
Minimum Repeat Number :
Mono:
Di:
Tri:
Tetra:
Penta:
Hexa:
Get Repeats in :
Both coding and non-coding regions
Only in coding regions
Only in non-coding regions
Output Options:
Sort Results By:
Start-End Co-ordinates
Motif (Alphabetical Order)
Repeat Unit Size
Tract Length (Ascending Order)
Tract Length (Descending Order)
Export Output File in:
HTML Format
Excel Format
CSV Format (Comma Separated Value)
Text Format (Tab Delimeted)