ChloroMitoSSRDB 2.0 - Database of Microsatellites from Chloroplast & Mitochondrial Genomes

All Imperfect Repeat Motifs of Chloroplast Genomes

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G	A	C	T	AG	TC	GC	CA	CG	CT	TA	GT	AT	GA
TG	AGA	TAA	AAC	GGA	ACG	GAT	CTC	AGC	AGG	GAC	TAT	ATA	CTT
CTG	CTA	ACC	GCC	GCG	TGG	CGA	CAG	ACT	CCT	TCA	TGT	CGG	CAT
GTC	ATG	TAC	TCC	TCT	GCT	CAC	GAA	TAG	GGC	CCA	ATC	AAT	TGA
TCG	CCG	ATT	CGC	TTC	GTA	GCA	AAG	TTA	TGC	CGT	TTG	ACA	GTG
CAA	TATT	TAGT	GAGT	GGAG	AACG	GTTA	CGAG	GTCT	ACTT	CCGT	GAGC	CTGC	CGAC
GTAC	AGGG	ACCT	GGCC	GCGA	GGCG	TTAA	AAAC	GCAT	CAAC	AACA	CGTG	CACC	TCTG
TTCA	TTAT	GATT	CCAG	GTGA	ACTA	GAAC	CGTC	CCAT	TCGC	ACAT	GTTG	ATAC	GAGG
GTGC	CGAA	GGGT	ACGA	TGGT	TAGA	ATTT	ATCG	ATCA	AAGG	ATCT	CAGC	GCGG	GTCA
TACT	AAGA	GCCA	TGCG	ACCG	CAAT	ATGT	ATAG	TGAT	TAAC	CTGG	GTTC	CTCG	AGAC
TCCT	TGAA	AAAG	CAAG	ACAG	AGTT	GAAT	GGAA	TTTG	GGTT	TATC	GTAG	CAGA	ATTA
CATT	GTAT	TCTT	GTTT	AACT	TCAT	CTCA	AATC	AGGA	TGGG	GGAC	CGGA	CCGA	GGTC
CTTT	TTGC	GCTT	AGCT	CTAA	CTCC	TCAA	ACAA	GATG	TCTA	TCCC	TGCT	CCTA	AGTA
TTTC	AGGT	AGAA	GAAA	TTAG	TGGC	TGAC	CCGC	GCTG	GCCG	AATG	ATAA	TATG	GCCT
CAGT	TAAG	GAAG	GTCC	TCCG	TTGG	ATGG	AAGT	ACTC	TACA	CTAC	AGTG	CCCA	GGCT
CGAT	AGCC	CTTC	AAGC	ACCC	GGTA	TGGA	TCGT	CGTA	TCGG	CGCT	TGCA	CCTT	TACG
CCTG	GACC	CCCG	ACTG	CATA	TCGA	CTGA	CCCT	AGTC	CAGG	CTAG	TAAT	ATGC	CTAT
GACA	GCTC	TGCC	TTGA	ATCC	ATGA	ATTC	TGTA	TTCC	GGCA	AGGC	CCAA	TCAC	ACCA
TAGG	AGCA	ATTG	AGAT	GGGA	TCCA	GCTA	CATG	GATC	TACC	GCCC	TTTA	CAAA	TGAG
GGAT	CGGG	CCGG	AATT	AATA	GATA	TTCT	CGCC	CCTC	TGTC	GACT	AACC	ACGG	ACGT
GTAA	CTTA	TTGT	GTGG	CGTT	ACGC	GGGC	TTTCA	ATTAA	TATTT	AATTC	CCTTT	GTATT	TTGGA
AGAAC	ACGGA	AATGC	CCTTC	ATTCC	TCCAC	ATTCT	TTGAA	CAAAA	TTCAC	TCTAT	ATACC	TTCAA	GTAAA
AAGGG	AATAA	GCAAA	TTCGG	TTGCA	CATTA	CTTCC	TTACG	AAGCA	TACAC	AACAT	TGGGC	ATCTG	AATAG
TAATC	TCCGA	TTGGT	AGTGC	CATTT	TATGA	GATAT	TTTGG	TAAGT	ACTGA	TTTAA	CGCAA	CTACT	ACAAA
AATGA	GATCG	AAGGA	TTAGA	AGATA	GAATG	AGCCG	GTTCT	TAAAG	AAAAG	CCAAA	CTCTT	GAGAT	TAGTT
AAGAA	TTTCC	TATTA	ATATA	AAGTA	TCATA	TTCTG	TAGGT	TGGTA	CTAAG	TTACC	AACAG	ATTAT	TCTCT
TAGAG	TCCTC	GAGGT	CTAAT	ATTTG	GGAGA	ATGGT	ACTCT	TCTGT	CAAAC	GCTCT	ATGAA	TAGAA	ATATG
AGTTA	GATCA	GTAAT	GGATT	CAAGA	AAACA	AATAC	CACCC	AATTT	GTATG	AAAAT	CTTGA	ATAAA	ACTTT
GATTT	AAAGG	GCCCC	ACATC	AGCAT	GATCT	CATCG	CAATC	ATTCA	TACAG	TTGTT	TCACC	TTGAC	CGGAA
TACTA	ATGTA	CGTTT	AGCGT	TAATG	ATTTA	AAAGA	CCGAA	TGTTT	TAGTA	TACTT	CTTAG	AATCC	CGTAA
TACCA	CTTTA	TTAAT	ATGTT	GGAAT	ATCAA	CTCCC	AAACC	CTGCT	TTACT	GGCGT	CCTCC	AGCCC	ATCCT
GAAGA	CAGAT	CATAT	CGTAG	CCCTC	AGCAC	CCTTG	TTTGC	TGTAT	ACAGT	CATTG	GAGGA	TTATC	TTGTA
ATAGT	CGGAT	TAGCT	TATAT	CAATG	TAAAT	TTCTT	ATTGA	ATAAG	CTATT	ACCGG	GATAA	TTCGA	GTTTC
TCAAT	ACCGA	ATTAC	TTACA	GATGG	ACTAA	AGGAA	AGAGA	GTCTT	TATCT	GTCAA	GATCC	AATTA	TGAAT
AAACT	ACTAT	CTATC	ATAAT	TTTCG	TACAT	AAGAG	TTATA	TCCGG	GCCTT	GGGAA	GTATA	AATCT	TGTTA
CAACA	TAACT	CCGGA	GAAAA	TGAAA	AAGTG	TGATT	AAGAT	CTTTC	CCAAT	CCAAC	TTCCT	TGGAT	AATCA
CATCA	TACGG	AACTA	CTGTT	AGAGT	AGTTT	GAACC	AGAAA	ACGTA	TGAAG	AAATG	TATGG	CGATC	TTGCC
GATTA	CTTTT	GTTTT	TTTGA	GGGGA	GATGT	CAATA	CGAAT	AGTGA	TATTG	AACGA	GATAG	TGTGT	GGATA
AGTAA	AGATG	TTTTC	TTCAT	AGAAT	CTTAA	TGATA	TAAAC	ACGAG	ATGCT	CTGAT	GATTC	AACGT	GGTAG
TTATG	CCCTA	TATCC	TACAA	TCAAG	CGATA	ATTTC	AAATA	GACTT	ATTGT	AGGGA	TGCAT	TGATC	CTCAA
AGATT	TCTCA	TAATA	CTTCT	ATGAT	CATCT	TATCA	TGCTT	ATTAG	TAAGC	ATTGG	CTAAC	CCATA	AAGGT
GAAGG	CGAAG	TAGGA	ATTGC	GAAAT	TACCC	TTCTC	GCCCT	GGAAA	CTTGT	GGATG	TCATC	TTAAA	CTTGC
AGGTT	TTTTA	GGGAG	CATAA	AAATC	ACCTA	CTCTA	TGGCC	GGATC	ATATC	TGTAC	TAGAT	CTTAC	AACTT
TCTTA	TCCTA	TCTTT	TCTAA	TAAAA	GAAAG	AACTC	CTTAT	TTGAT	TTTAG	TCAAC	TTGTG	CCTAA	CTAAA
ATACT	TCCCT	AAATT	AATAT	TTTGT	CCTGG	TAACA	AGTAG	TCCAT	TGTAA	TCCGT	AGATC	TTCGC	AGTGT
GTGTG	TTATT	TTTAC	AAAGT	GGTAT	TCGAT	TTCCC	TCCTG	ATAGA	ATTCG	TCTTG	TTCCA	TGAGA	TTTTG
AAAAC	AGCGA	TAAGA	TTCTA	CACTT	CGAAA	GTTCA	ATCAT	AGGTA	TCCCC	AGTAC	TATAC	GATTG	CTTCA
TGGAA	TTTCT	TTGCT	AAAGC	CGATT	GAATA	ACTTA	TGTGC	GTTTA	CATTC	GAATT	TTCAG	AATGT	GTTAT
GATAC	GCAGT	CTATA	TCAGA	TTTAT	GGTTC	TCGGT	TCCTT	TCCAA	GCAAT	GTAGA	TACCT	ATACA	TCTGA
GAATC	ACATA	GGTAA	TAGGC	ACCAT	TAATT	TATTC	ATATT	CATAC	TCATT	TATAA	TGCAA	AACGG	GACCG
TATGT	CCTCT	ATCCC	TATAG	CAGAA	CACAA	CTCAAA	TAAAAA	TTTTCT	TATAGA	CGAAAA	TTTGTA	TCTTCA	TATGAA
GTTTTT	ACATAC	AGATAA	ATTAGA	GTCCAG	CATAGT	AATAGA	CATTCT	GAAATG	CTATTC	ATTCTA	AAAGGA	GTTTGT	ATTGTA
GATTTG	CAAAAG	TAGAGC	TCTTTT	TAGATT	TATTCA	CATAGG	TAAATA	ATTTCT	ACTATA	ATAAGA	TAAATG	ACTTAA	ATGAAT
AGCTAA	CTATAA	ACGTTA	GGCAAT	TTCCTA	CTACCT	ACTTTG	CAAATA	TGAAAT	CCTTTA	GATGAG	GGAATA	ATAGAA	TAAAAT
TTTCTA	CTCCTT	TTAGAA	TATAAT	AGTATT	TTTTGT	ACAAAT	TAAATC	TATGAT	ATCCTT	CAATAA	CTTTCT	GAAAGA	CTTTTA
TTAATG	CCTTCC	CTTTAT	AATAAC	GCTTGC	ACGGAG	TCAAAG	TTTTTC	ACTAAT	TTGGGG	TCTTTA	ATTTAA	ATACAT	CTATAT
CTTGAT	TCATTT	ATCGTC	TCCAAC	TCCCCA	GAATAG	TCTTCC	CCAACA	GTGATG	TACTAT	TCGAAA	TAGGAA	TGGCTA	CTAGAA
TTAACA	AATAAA	AAACAA	GAAATT	GTTCTT	ATAAGC	TAGAAA	ATCATA	AGTAAA	TGATTT	GTTCCA	AATACA	TACTCT	CAAATG
TAAAAC	CTTGTT	AGATAT	CGTCAT	TATTCC	CTGCCG	TTGGAA	ATGTTA	AGGAAA	AAATAG	TCCATA	ATGAAG	ATAAAT	ATCTTC
TTTACT	TTATCA	AGTCAA	ACAAAG	CCCCTT	AATACT	ACTGAA	TATCAA	TTTGAC	AGGATT	TTGAAA	ATAACA	AAAATG	TTCAAA
TTCTAT	AATTTC	AATATA	GATATT	TTTAAT	GTATTT	AATAAG	GATAAG	ATTTAC	ATAACC	CAAGAA	ATCCAT	AATGAT	TGACAA
ATGTGA	TTTCCT	AATGTT	ACAAAA	TTTCTC	TATTGA	AATTTT	GAATCA	TATATT	CTATCT	AATTGA	TGATAT	GAAATA	TCATAA
TGATCA	ATACTA	TATAGT	CTAGTT	TCTTTC	GGAAAG	CTACAT	TTGTAT	GGAAAC	CAAATT	TGATAG	TTTGCT	AAAAAG	GATCTT
ATAAGG	GTAAGA	ATATTA	TATATC	TTTCAT	ATGGAT	TATAAA	TCATTC	TTATCT	ATGTAG	TTTATG	CATATT	CATTTC	AGATTT
AACTTA	TTAACG	AGTTTC	GTGCAA	ACATAT	CAAAAA	TCCTTT	ACACCT	TTTTTA	CTGCAC	ATCAAT	AAATGA	TGCTAT	TCCTTC
AATGCT	TCTTCG	TTCATT	AAAACG	CCAATT	ATATAC	GAAAAT	TTCCTT	CTTATC	ATAAGT	TCCATT	AAAAGA	CCTTTT	GAAGGA
TATCTA	TTAGTA	TTTATT	TCCCCT	TCATAT	TTTTAT	AATCCA	GGATTT	ATCTAA	TGTAGT	ATATTC	TCCTCT	ATATAA	AGGATA
TAGGGA	TCGACT	ACGTAA	AGTCTA	CTGAAT	AAGTAC	GGTTCC	ATTTCA	CTGTTT	AAATTA	ATTTTG	AGCAAA	TAATTA	TCTATA
AACCTC	ATTCAT	TAGAAT	ATACAG	ATTGAT	CATCCT	AAGCTA	GGAAAA	TTATAG	CTATTA	CTCTTT	ACAAGA	AGCAAC	TTTAAC
AAATGC	CTTCAT	ACTTGC	TATCAT	GAACCC	ATAGGT	CAATTA	GAATGG	TTTATA	AAATAT	TATAAC	TGAAAA	TATTAA	TGTTGA
TCTCTA	TAACTT	TAGTAT	TTCCTC	CTAAAA	ATTAGC	CATAAA	TTACAA	TATTAC	AGAGTT	TTCGTT	GTTGCG	TACCTA	CTTTTC
AAAAAC	GAAAAA	AGAGAA	TCTATC	ATTTCG	TAAACA	CTTATA	TACATA	AATTTG	GAATTG	TATTCT	TTACTT	AATCTA	ATCCAA
CGAAAT	GAAGAG	AGAACT	TGAATA	ACAACC	CGAAGA	CTATAC	AAGCAA	GCGACG	TTTCAG	TGACTT	GACAAA	TATACA	CAAGCC
ATTATA	CAATAC	ATTCGA	TAGTAA	TAATCT	GCATTA	GAAGCG	CGTTAA	TTGAAT	GACTTT	CTCGTA	TATTGT	CGATTA	TGGCAA
ATTTTC	TATATG	ATCTAT	AAAATT	ATATAG	TTAATT	AATTAG	GCCAAA	ATTCCC	CATTAA	CATTTA	GATTAG	TTCTAC	ACTTAG
AAACTA	AGATAG	TTAAAC	ACAGAA	TTCCAA	AGCCAC	TTTCGA	TCATCT	GAACTT	AGAAAA	ATTCAA	TTAAAA	TTATAA	GTGAAA
GATTTA	CAAAAT	AGAGCA	CTAAGA	AGTTTT	TGCACC	AATCGA	ATTTGG	GAGGAA	ATTCCG	AAATCT	CCGGAA	TTTCAC	CAAGAT
GCAGCT	TTATTT	GTTATC	AAAGAA	GGTTCG	GATTTC	AATTTA	TTATTG	AATCAA	GTTGGT	GTGACG	GCTTTA	TTATGT	ATTTAG
TCGAAT	CTTTAG	AAATCA	CAAATC	GGAGAA	CGGCAA	AATGAA	CAAAAC	TTGCTA	TAGCTG	AAAACA	AAATAA	GATGGA	GGGAGG
TATTTT	ATTAGT	ACTCTT	ATTTTA	ACTTCT	AAAGAT	GTATTA	AATTCA	AATTAA	AGGAAG	ACTAAA	TTAGAT	GCTTCA	AAGTTT
CCTCCA	CTCAAG	TGCAAT	GAGAAA	ACGGAA	GAAAAC	TTCTTT	ATCAAA	TATTAG	TTCATA	CTTCTA	CAGGAA	ATTACT	CATATA
TTAAAT	TCTGGT	GTTTAT	ATTACA	AACAGG	AAGGAA	CACATA	GTAATA	CAACTT	CTCTTC	ATAGTG	TTTCCG	CAATGG	GAACTA
TAATTT	GTTCGG	ATTCTT	AATTAT	ACAGTA	GGATAA	ATATCT	GGATAT	AGTGGA	TAAGAT	TAAACT	AGTGAT	GCAATA	TTCTAA
CGCTTC	TAAGTA	AACTAT	AAAGTA	CTGTAT	CCTCTT	AACAAA	CCAAAT	TCTCTT	AAGAAA	TAACAT	TAAGAA	TCAACA	TAATTC
ATACAA	AATTCT	ATGTAT	CCAACT	TATCAC	GAATGA	AGTCGA	CATACT	ATGGTA	TCATCC	TCTTGT	AGAACA	CCCGCT	ATTTGA
GAATAA	TAATAT	AAAATA	TTTCGT	AAGTCA	ATATCG	AAATAC	TAACTA	AGAAGC	TTGGAT	GATAAA	TAGTAC	GAGATA	CTTTTG
AGATTG	GATTAT	ACTAAG	ATTGAA	CTTTTT	TTTTTG	TAATGA	TAAAAG	TATTTA	TACTTA	TCTATT	CAAACA	TATCGT	TTCGAA
CAGGTC	GAATTC	CTCTTG	AAACTT	CAAAGA	CAATAT	TAATCA	TAATCC	ATTTGT	TTCTGT	AAAAAT	TATTTG	ATATGG	AGAAAG
TAGTTA	GGGGAA	GGTTAT	TGCTAA	CTAATG	ATCTTT	CTAAAG	ATCGAA	TCTGAA	GAAGTT	TACTGA	TACACG	TACTTC	TTCATC
AAATTT	TCTCAT	TAAAGA	AGAATT	TGCTTT	TCATGT	GGGAAA	CTTTGA	TTAAGT	GGATGA	TAATTG	TATAAG	TGATTA	TACTAG
TACCTT	GTATAA	CAATTC	TCTTAA	TCCTAA	GTTGGC	AGATGT	AATGCA	GGATAC	TTTAAA	GAATTT	TGTTTT	AAGTAT	GATATA
ATTTAT	TTACTA	AGAATG	TATACT	ATCTGA	TTAGTT	CCTATA	TCAAAT	GGTATA	AACATA	TTTTAC	ATGCTA	TTTAGT	GAAAAG
CTAATT	TCCATC	ATATTG	ATTAAT	AATATG	ATCTTA	AGTAAT	ATTAAA	CTAGTA	TTTTAG	TTTCAA	GACCTG	AAATTC	AGAATA
AGTATA	GAAGTC	TTAAGA	TTTCTG	AGATTA	CCGCTG	TCTAAT	AATATT	TACGTT	CATTTT	TTTGTT	AAGATA	ATATGT	TTTTAA
GAGAAT	TATGTA	ATAGAT	TCAATT	TTGTTT	TCACTA	AAAATC	TTGAAG	TTAAAG	TAGATA	ATACTT	TAGAAG	TTATGA	TTTCTT
ATATGA	AGGTGT	AAATTG	CATTCA	ATTAAG	TATTTC	GGAACA	ATTATC	TTCTCC	GCATAA	TGTATA	TCCTAC	TAACAA	ATGTAC
CTACTT	AATCCT	AATTGG	TCCAAT	TAATAG	ATAAAA	TGTAAT	CACAAA	TTAATA	ATATTT	ACCAAC	AAGAGG	CCTATT	GTTATT
GATTAA	ATACCA	AGTTGG	TTGTTA	TCAGAA	TCAATA	TGGAGT	TCAAAA	TTTTGA	AGAAAT	TTTTCC	CTTATT	GTAAAA	TCTTAT
TTGATT	TTCAGA	TACCAA	AAAGCA	TACACC	CTTCAA	GAAGGG	TAAGAG	ATCGAT	ATAGGA	TACAAA	TCCCCC	-	-

ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

All Imperfect Repeat Motifs of Chloroplast Genomes