ChloroMitoSSRDB 2.0 - Database of Microsatellites from Chloroplast & Mitochondrial Genomes

All Imperfect Repeat Motifs of Chloroplast Genomes

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G	A	C	T	AG	TC	GC	CA	CG	CT	TA	GT	AT	GA
TG	TGC	CGT	TTG	ACA	GTG	AGT	CAA	AGA	TAA	AAC	GGA	ACG	GAT
AGC	AGG	GAC	TAT	ATA	CTT	GGT	CTG	CTA	ACC	GCC	GCG	TGG	CGA
ACT	CCT	TCA	TGT	CGG	CAT	GAG	GTC	ATG	TAC	TCC	TCT	GCT	CAC
TAG	GGC	CCA	ATC	AAT	TGA	GTT	TCG	CCG	ATT	CGC	TTC	GTA	GCA
TTA	TGTC	GACT	AACC	ACGG	ACGT	TTAC	GTAA	CTTA	TTGT	GTGG	CGTT	ACGC	GGGC
TAGT	GAGT	GGAG	AACG	GTTA	CGAG	GTCT	ACTT	CCGT	GAGC	CTGC	CGAC	GCAA	GTAC
ACCT	GGCC	GCGA	GGCG	TTAA	AAAC	GCAT	CAAC	AACA	CGTG	CACC	TCTG	CGGC	TTCA
GATT	CCAG	GTGA	ACTA	GAAC	CGTC	CCAT	TCGC	ACAT	GTTG	ATAC	GAGG	CCAC	GTGC
GGGT	ACGA	TGGT	TAGA	ATTT	ATCG	ATCA	AAGG	ATCT	CAGC	GCGG	GTCA	CTTG	TACT
GCCA	TGCG	ACCG	CAAT	ATGT	ATAG	TGAT	TAAC	CTGG	GTTC	CTCG	AGAC	AGCG	TCCT
AAAG	CAAG	ACAG	AGTT	GAAT	GGAA	TTTG	GGTT	TATC	GTAG	CAGA	ATTA	TAAA	CATT
TCTT	GTTT	AACT	TCAT	CTCA	AATC	AGGA	TGGG	GGAC	CGGA	CCGA	GGTC	AAAT	CTTT
GCTT	AGCT	CTAA	CTCC	TCAA	ACAA	GATG	TCTA	TCCC	TGCT	CCTA	AGTA	TCAG	TTTC
AGAA	GAAA	TTAG	TGGC	TGAC	CCGC	GCTG	GCCG	AATG	ATAA	TATG	GCCT	TTCG	CAGT
GAAG	GTCC	TCCG	TTGG	ATGG	AAGT	ACTC	TACA	CTAC	AGTG	CCCA	GGCT	TAGC	CGAT
CTTC	AAGC	ACCC	GGTA	TGGA	TCGT	CGTA	TCGG	CGCT	TGCA	CCTT	TACG	TGTT	CCTG
CCCG	ACTG	CATA	TCGA	CTGA	CCCT	AGTC	CAGG	CTAG	TAAT	ATGC	CTAT	CTGT	GACA
TGCC	TTGA	ATCC	ATGA	ATTC	TGTA	TTCC	GGCA	AGGC	CCAA	TCAC	ACCA	CATC	TAGG
ATTG	AGAT	GGGA	TCCA	GCTA	CATG	GATC	TACC	GCCC	TTTA	CAAA	TGAG	GCAC	GGAT
CCGG	AATT	AATA	GATA	TTCT	CGCC	CCTC	TTTAT	GGTTC	TCGGT	TCCTT	TCCAA	GCAAT	GTAGA
ATACA	TCTGA	TTAAC	GAATC	ACATA	GGTAA	TAGGC	ACCAT	TAATT	TATTC	ATATT	CATAC	TCATT	TATAA
AACGG	GACCG	TTAGG	TATGT	CCTCT	ATCCC	TATAG	CAGAA	CACAA	TTTCA	ATTAA	TATTT	AATTC	CCTTT
TTGGA	ATCTA	AGAAC	ACGGA	AATGC	CCTTC	ATTCC	TCCAC	ATTCT	TTGAA	CAAAA	TTCAC	TCTAT	ATACC
GTAAA	GTTAA	AAGGG	AATAA	GCAAA	TTCGG	TTGCA	CATTA	CTTCC	TTACG	AAGCA	TACAC	AACAT	TGGGC
AATAG	ATTTT	TAATC	TCCGA	TTGGT	AGTGC	CATTT	TATGA	GATAT	TTTGG	TAAGT	ACTGA	TTTAA	CGCAA
ACAAA	AATTG	AATGA	GATCG	AAGGA	TTAGA	AGATA	GAATG	AGCCG	GTTCT	TAAAG	AAAAG	CCAAA	CTCTT
TAGTT	CAAAT	AAGAA	TTTCC	TATTA	ATATA	AAGTA	TCATA	TTCTG	TAGGT	TGGTA	CTAAG	TTACC	AACAG
TCTCT	ATCCA	TAGAG	TCCTC	GAGGT	CTAAT	ATTTG	GGAGA	ATGGT	ACTCT	TCTGT	CAAAC	GCTCT	ATGAA
ATATG	TCGAA	AGTTA	GATCA	GTAAT	GGATT	CAAGA	AAACA	AATAC	CACCC	AATTT	GTATG	AAAAT	CTTGA
ACTTT	CCTAT	GATTT	AAAGG	GCCCC	ACATC	AGCAT	GATCT	CATCG	CAATC	ATTCA	TACAG	TTGTT	TCACC
CGGAA	TGTCG	TACTA	ATGTA	CGTTT	AGCGT	TAATG	ATTTA	AAAGA	CCGAA	TGTTT	TAGTA	TACTT	CTTAG
CGTAA	ATCTC	TACCA	CTTTA	TTAAT	ATGTT	GGAAT	ATCAA	CTCCC	AAACC	CTGCT	TTACT	GGCGT	CCTCC
ATCCT	TGTGG	GAAGA	CAGAT	CATAT	CGTAG	CCCTC	AGCAC	CCTTG	TTTGC	TGTAT	ACAGT	CATTG	GAGGA
TTGTA	GAGAA	ATAGT	CGGAT	TAGCT	TATAT	CAATG	TAAAT	TTCTT	ATTGA	ATAAG	CTATT	ACCGG	GATAA
GTTTC	ACAAT	TCAAT	ACCGA	ATTAC	TTACA	GATGG	ACTAA	AGGAA	AGAGA	GTCTT	TATCT	GTCAA	GATCC
TGAAT	ATCTT	AAACT	ACTAT	CTATC	ATAAT	TTTCG	TACAT	AAGAG	TTATA	TCCGG	GCCTT	GGGAA	GTATA
TGTTA	GGGTT	CAACA	TAACT	CCGGA	GAAAA	TGAAA	AAGTG	TGATT	AAGAT	CTTTC	CCAAT	CCAAC	TTCCT
AATCA	CCGTT	CATCA	TACGG	AACTA	CTGTT	AGAGT	AGTTT	GAACC	AGAAA	ACGTA	TGAAG	AAATG	TATGG
TTGCC	CTAGA	GATTA	CTTTT	GTTTT	TTTGA	GGGGA	GATGT	CAATA	CGAAT	AGTGA	TATTG	AACGA	GATAG
GGATA	CAATT	AGTAA	AGATG	TTTTC	TTCAT	AGAAT	CTTAA	TGATA	TAAAC	ACGAG	ATGCT	CTGAT	GATTC
GGTAG	GCCAA	TTATG	CCCTA	TATCC	TACAA	TCAAG	CGATA	ATTTC	AAATA	GACTT	ATTGT	AGGGA	TGCAT
CTCAA	AAGTT	AGATT	TCTCA	TAATA	CTTCT	ATGAT	CATCT	TATCA	TGCTT	ATTAG	TAAGC	ATTGG	CTAAC
AAGGT	TTAGT	GAAGG	CGAAG	TAGGA	ATTGC	GAAAT	TACCC	TTCTC	GCCCT	GGAAA	CTTGT	GGATG	TCATC
CTTGC	GGTTT	AGGTT	TTTTA	GGGAG	CATAA	AAATC	ACCTA	CTCTA	TGGCC	GGATC	ATATC	TGTAC	TAGAT
AACTT	AGCAA	TCTTA	TCCTA	TCTTT	TCTAA	TAAAA	GAAAG	AACTC	CTTAT	TTGAT	TTTAG	TCAAC	TTGTG
CTAAA	TCAAA	ATACT	TCCCT	AAATT	AATAT	TTTGT	CCTGG	TAACA	AGTAG	TCCAT	TGTAA	TCCGT	AGATC
AGTGT	GCTGG	GTGTG	TTATT	TTTAC	AAAGT	GGTAT	TCGAT	TTCCC	TCCTG	ATAGA	ATTCG	TCTTG	TTCCA
TTTTG	AACAA	AAAAC	AGCGA	TAAGA	TTCTA	CACTT	CGAAA	GTTCA	ATCAT	AGGTA	TCCCC	AGTAC	TATAC
CTTCA	TTAAG	TGGAA	TTTCT	TTGCT	AAAGC	CGATT	GAATA	ACTTA	TGTGC	GTTTA	CATTC	GAATT	TTCAG
GTTAT	GTCCG	GATAC	GCAGT	CTATA	TCAGA	AATTGG	TCCAAT	TAATAG	ATAAAA	TGTAAT	CACAAA	TTAATA	ATATTT
AAGAGG	CCTATT	GTTATT	TCTTAG	GATTAA	ATACCA	AGTTGG	TTGTTA	TCAGAA	TCAATA	TGGAGT	TCAAAA	TTTTGA	AGAAAT
CTTATT	GTAAAA	TCTTAT	GGAGTG	TTGATT	TTCAGA	TACCAA	AAAGCA	TACACC	CTTCAA	GAAGGG	TAAGAG	ATCGAT	ATAGGA
TCCCCC	CTCAAA	TAAAAA	TTTTCT	TATAGA	CGAAAA	TTTGTA	TCTTCA	TATGAA	TAAATT	GTTTTT	ACATAC	AGATAA	ATTAGA
CATAGT	AATAGA	CATTCT	GAAATG	CTATTC	ATTCTA	AAAGGA	GTTTGT	ATTGTA	TTACCT	GATTTG	CAAAAG	TAGAGC	TCTTTT
TATTCA	CATAGG	TAAATA	ATTTCT	ACTATA	ATAAGA	TAAATG	ACTTAA	ATGAAT	GTCTCT	AGCTAA	CTATAA	ACGTTA	GGCAAT
CTACCT	ACTTTG	CAAATA	TGAAAT	CCTTTA	GATGAG	GGAATA	ATAGAA	TAAAAT	AAAAGC	TTTCTA	CTCCTT	TTAGAA	TATAAT
TTTTGT	ACAAAT	TAAATC	TATGAT	ATCCTT	CAATAA	CTTTCT	GAAAGA	CTTTTA	TAGTTT	TTAATG	CCTTCC	CTTTAT	AATAAC
ACGGAG	TCAAAG	TTTTTC	ACTAAT	TTGGGG	TCTTTA	ATTTAA	ATACAT	CTATAT	TTTTGC	CTTGAT	TCATTT	ATCGTC	TCCAAC
GAATAG	TCTTCC	CCAACA	GTGATG	TACTAT	TCGAAA	TAGGAA	TGGCTA	CTAGAA	TACTTT	TTAACA	AATAAA	AAACAA	GAAATT
ATAAGC	TAGAAA	ATCATA	AGTAAA	TGATTT	GTTCCA	AATACA	TACTCT	CAAATG	TCAGAG	TAAAAC	CTTGTT	AGATAT	CGTCAT
CTGCCG	TTGGAA	ATGTTA	AGGAAA	AAATAG	TCCATA	ATGAAG	ATAAAT	ATCTTC	CCAATG	TTTACT	TTATCA	AGTCAA	ACAAAG
AATACT	ACTGAA	TATCAA	TTTGAC	AGGATT	TTGAAA	ATAACA	AAAATG	TTCAAA	TCCTTA	TTCTAT	AATTTC	AATATA	GATATT
GTATTT	AATAAG	GATAAG	ATTTAC	ATAACC	CAAGAA	ATCCAT	AATGAT	TGACAA	GAGCAG	ATGTGA	TTTCCT	AATGTT	ACAAAA
TATTGA	AATTTT	GAATCA	TATATT	CTATCT	AATTGA	TGATAT	GAAATA	TCATAA	AGAGAC	TGATCA	ATACTA	TATAGT	CTAGTT
GGAAAG	CTACAT	TTGTAT	GGAAAC	CAAATT	TGATAG	TTTGCT	AAAAAG	GATCTT	GGAGGG	ATAAGG	GTAAGA	ATATTA	TATATC
ATGGAT	TATAAA	TCATTC	TTATCT	ATGTAG	TTTATG	CATATT	CATTTC	AGATTT	AAACTG	AACTTA	TTAACG	AGTTTC	GTGCAA
CAAAAA	TCCTTT	ACACCT	TTTTTA	CTGCAC	ATCAAT	AAATGA	TGCTAT	TCCTTC	TATAGC	AATGCT	TCTTCG	TTCATT	AAAACG
ATATAC	GAAAAT	TTCCTT	CTTATC	ATAAGT	TCCATT	AAAAGA	CCTTTT	GAAGGA	AGGGGA	TATCTA	TTAGTA	TTTATT	TCCCCT
TTTTAT	AATCCA	GGATTT	ATCTAA	TGTAGT	ATATTC	TCCTCT	ATATAA	AGGATA	CGTATA	TAGGGA	TCGACT	ACGTAA	AGTCTA
AAGTAC	GGTTCC	ATTTCA	CTGTTT	AAATTA	ATTTTG	AGCAAA	TAATTA	TCTATA	GGCTTT	AACCTC	ATTCAT	TAGAAT	ATACAG
CATCCT	AAGCTA	GGAAAA	TTATAG	CTATTA	CTCTTT	ACAAGA	AGCAAC	TTTAAC	CTATTT	AAATGC	CTTCAT	ACTTGC	TATCAT
ATAGGT	CAATTA	GAATGG	TTTATA	AAATAT	TATAAC	TGAAAA	TATTAA	TGTTGA	AGTTAT	TCTCTA	TAACTT	TAGTAT	TTCCTC
ATTAGC	CATAAA	TTACAA	TATTAC	AGAGTT	TTCGTT	GTTGCG	TACCTA	CTTTTC	GTTAAA	AAAAAC	GAAAAA	AGAGAA	TCTATC
TAAACA	CTTATA	TACATA	AATTTG	GAATTG	TATTCT	TTACTT	AATCTA	ATCCAA	ATAAAG	CGAAAT	GAAGAG	AGAACT	TGAATA
CGAAGA	CTATAC	AAGCAA	GCGACG	TTTCAG	TGACTT	GACAAA	TATACA	CAAGCC	TGAATT	ATTATA	CAATAC	ATTCGA	TAGTAA
GCATTA	GAAGCG	CGTTAA	TTGAAT	GACTTT	CTCGTA	TATTGT	CGATTA	TGGCAA	ATTTTT	ATTTTC	TATATG	ATCTAT	AAAATT
TTAATT	AATTAG	GCCAAA	ATTCCC	CATTAA	CATTTA	GATTAG	TTCTAC	ACTTAG	CAATAG	AAACTA	AGATAG	TTAAAC	ACAGAA
AGCCAC	TTTCGA	TCATCT	GAACTT	AGAAAA	ATTCAA	TTAAAA	TTATAA	GTGAAA	ACAATA	GATTTA	CAAAAT	AGAGCA	CTAAGA
TGCACC	AATCGA	ATTTGG	GAGGAA	ATTCCG	AAATCT	CCGGAA	TTTCAC	CAAGAT	CCCTCC	GCAGCT	TTATTT	GTTATC	AAAGAA
GATTTC	AATTTA	TTATTG	AATCAA	GTTGGT	GTGACG	GCTTTA	TTATGT	ATTTAG	CTAACG	TCGAAT	CTTTAG	AAATCA	CAAATC
CGGCAA	AATGAA	CAAAAC	TTGCTA	TAGCTG	AAAACA	AAATAA	GATGGA	GGGAGG	TAAAGT	TATTTT	ATTAGT	ACTCTT	ATTTTA
AAAGAT	GTATTA	AATTCA	AATTAA	AGGAAG	ACTAAA	TTAGAT	GCTTCA	AAGTTT	GCAAAA	CCTCCA	CTCAAG	TGCAAT	GAGAAA
GAAAAC	TTCTTT	ATCAAA	TATTAG	TTCATA	CTTCTA	CAGGAA	ATTACT	CATATA	AAGAAT	TTAAAT	TCTGGT	GTTTAT	ATTACA
AAGGAA	CACATA	GTAATA	CAACTT	CTCTTC	ATAGTG	TTTCCG	CAATGG	GAACTA	CCGTCG	TAATTT	GTTCGG	ATTCTT	AATTAT
GGATAA	ATATCT	GGATAT	AGTGGA	TAAGAT	TAAACT	AGTGAT	GCAATA	TTCTAA	TGTTTA	CGCTTC	TAAGTA	AACTAT	AAAGTA
CCTCTT	AACAAA	CCAAAT	TCTCTT	AAGAAA	TAACAT	TAAGAA	TCAACA	TAATTC	TTCAAT	ATACAA	AATTCT	ATGTAT	CCAACT
GAATGA	AGTCGA	CATACT	ATGGTA	TCATCC	TCTTGT	AGAACA	CCCGCT	ATTTGA	TTATTC	GAATAA	TAATAT	AAAATA	TTTCGT
ATATCG	AAATAC	TAACTA	AGAAGC	TTGGAT	GATAAA	TAGTAC	GAGATA	CTTTTG	TATCTC	AGATTG	GATTAT	ACTAAG	ATTGAA
TTTTTG	TAATGA	TAAAAG	TATTTA	TACTTA	TCTATT	CAAACA	TATCGT	TTCGAA	TTAATC	CAGGTC	GAATTC	CTCTTG	AAACTT
CAATAT	TAATCA	TAATCC	ATTTGT	TTCTGT	AAAAAT	TATTTG	ATATGG	AGAAAG	TTATAT	TAGTTA	GGGGAA	GGTTAT	TGCTAA
ATCTTT	CTAAAG	ATCGAA	TCTGAA	GAAGTT	TACTGA	TACACG	TACTTC	TTCATC	GTTTCC	AAATTT	TCTCAT	TAAAGA	AGAATT
TCATGT	GGGAAA	CTTTGA	TTAAGT	GGATGA	TAATTG	TATAAG	TGATTA	TACTAG	GATCAT	TACCTT	GTATAA	CAATTC	TCTTAA
GTTGGC	AGATGT	AATGCA	GGATAC	TTTAAA	GAATTT	TGTTTT	AAGTAT	GATATA	TTTACA	ATTTAT	TTACTA	AGAATG	TATACT
TTAGTT	CCTATA	TCAAAT	GGTATA	AACATA	TTTTAC	ATGCTA	TTTAGT	GAAAAG	AATTCG	CTAATT	TCCATC	ATATTG	ATTAAT
ATCTTA	AGTAAT	ATTAAA	CTAGTA	TTTTAG	TTTCAA	GACCTG	AAATTC	AGAATA	AGTAGA	AGTATA	GAAGTC	TTAAGA	TTTCTG
CCGCTG	TCTAAT	AATATT	TACGTT	CATTTT	TTTGTT	AAGATA	ATATGT	TTTTAA	CTAATA	GAGAAT	TATGTA	ATAGAT	TCAATT
TCACTA	AAAATC	TTGAAG	TTAAAG	TAGATA	ATACTT	TAGAAG	TTATGA	TTTCTT	AAAAGG	ATATGA	AGGTGT	AAATTG	CATTCA
TATTTC	GGAACA	ATTATC	TTCTCC	GCATAA	TGTATA	TCCTAC	TAACAA	ATGTAC	GAAGTG	CTACTT	AATCCT	-	-

ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

All Imperfect Repeat Motifs of Chloroplast Genomes