ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect GAAT Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_008117GAAT13905349058552 Zygnema circumcarinatum chloroplast
2NC_020319GAAT511090111092121Cycas revoluta chloroplast
3NC_021109GAAT426553726555216Pleodorina starrii plastid
4NC_021121GAAT46961697717Ardisia polysticta chloroplast
5NC_011087GAAT3738412Paulinella chromatophora chromatophore
6NC_011087GAAT32347235711Paulinella chromatophora chromatophore
7NC_011087GAAT395733495734512Paulinella chromatophora chromatophore
8NC_011087GAAT397572097573213Paulinella chromatophora chromatophore
9NC_014340GAAT311339911341012Chromera velia strain CCMP2878 chloroplast
10NC_014569GAAT3621146212411Erodium texanum plastid
11NC_014570GAAT3866548666512Eucalyptus grandis chloroplast
12NC_014573GAAT3275472755711Geranium palmatum plastid
13NC_014582GAAT32929294012Monsonia speciosa plastid
14NC_014582GAAT311536511537612Monsonia speciosa plastid
15NC_014582GAAT312279212280211Monsonia speciosa plastid
16NC_014674GAAT3211252113511Castanea mollissima chloroplast
17NC_014674GAAT312782012783011Castanea mollissima chloroplast
18NC_014676GAAT3234912350111Theobroma cacao chloroplast
19NC_014676GAAT312353512354612Theobroma cacao chloroplast
20NC_014697GAAT31605161612Prunus persica chloroplast
21NC_014697GAAT3229832299311Prunus persica chloroplast
22NC_014697GAAT3837348374512Prunus persica chloroplast
23NC_014697GAAT312412412413411Prunus persica chloroplast
24NC_014807GAAT3248162482611Corynocarpus laevigata chloroplast
25NC_014807GAAT312630612631611Corynocarpus laevigata chloroplast
26NC_015083GAAT3712747128613Erodium carvifolium chloroplast
27NC_015113GAAT3229582296811Anthriscus cerefolium chloroplast
28NC_015113GAAT312220812221811Anthriscus cerefolium chloroplast
29NC_015206GAAT3221882219811Fragaria vesca subsp. vesca chloroplast
30NC_015401GAAT3238682387811Olea europaea subsp. europaea plastid
31NC_015401GAAT3397703978011Olea europaea subsp. europaea plastid
32NC_015403GAAT313366713367711Fistulifera sp. JPCC DA0580 chloroplast
33NC_015604GAAT3238732388311Olea europaea subsp. cuspidata chloroplast
34NC_015604GAAT3397703978011Olea europaea subsp. cuspidata chloroplast
35NC_015605GAAT3248612487111Nelumbo lutea chloroplast
36NC_015605GAAT3699516996212Nelumbo lutea chloroplast
37NC_015608GAAT3238912390111Olea woodiana subsp. woodiana chloroplast
38NC_015608GAAT3398293983911Olea woodiana subsp. woodiana chloroplast
39NC_015610GAAT3250292503911Nelumbo nucifera chloroplast
40NC_015610GAAT3700047001512Nelumbo nucifera chloroplast
41NC_015621GAAT3177921780211Ageratina adenophora chloroplast
42NC_015623GAAT3238772388711Olea europaea subsp. maroccana chloroplast
43NC_015623GAAT3397803979011Olea europaea subsp. maroccana chloroplast
44NC_015803GAAT310485310486311Indocalamus longiauritus plastid
45NC_015817GAAT310479910480911Phyllostachys edulis chloroplast
46NC_015820GAAT310485610486611Acidosasa purpurea chloroplast
47NC_015826GAAT310488510489511Phyllostachys nigra var. henonis chloroplast
48NC_015830GAAT310456810457811Bambusa emeiensis chloroplast
49NC_015831GAAT310470810471811Ferrocalamus rimosivaginus plastid
50NC_015891GAAT312037512038612Spirodela polyrhiza chloroplast
51NC_015892GAAT3239022391211Magnolia kwangsiensis chloroplast
52NC_015892GAAT3408544086411Magnolia kwangsiensis chloroplast
53NC_015892GAAT3532385324912Magnolia kwangsiensis chloroplast
54NC_015892GAAT3710907110112Magnolia kwangsiensis chloroplast
55NC_015892GAAT3713227133211Magnolia kwangsiensis chloroplast
56NC_015892GAAT312634312635311Magnolia kwangsiensis chloroplast
57NC_015894GAAT35133514513Wolffiella lingulata chloroplast
58NC_015894GAAT312104512105612Wolffiella lingulata chloroplast
59NC_015899GAAT3242232423311Wolffia australiana chloroplast
60NC_015899GAAT312067212068312Wolffia australiana chloroplast
61NC_015983GAAT3236512366111Cucumis melo subsp. melo chloroplast
62NC_015990GAAT3481684817811Panicum virgatum chloroplast
63NC_015996GAAT3238602387011Pyrus pyrifolia chloroplast
64NC_015996GAAT3856218563212Pyrus pyrifolia chloroplast
65NC_015996GAAT312623612624611Pyrus pyrifolia chloroplast
66NC_016068GAAT3196131962311Nicotiana undulata chloroplast
67NC_016430GAAT36610662112Eleutherococcus senticosus chloroplast
68NC_016430GAAT312409612410611Eleutherococcus senticosus chloroplast
69NC_016468GAAT3230262303611Boea hygrometrica chloroplast
70NC_016471GAAT34198420811Neottia nidus-avis plastid
71NC_016668GAAT311804811805912Gossypium raimondii chloroplast
72NC_016670GAAT311822811823912Gossypium darwinii chloroplast
73NC_016677GAAT310254510255511Leersia tisserantii plastid
74NC_016690GAAT311827211828312Gossypium tomentosum chloroplast
75NC_016692GAAT311814111815212Gossypium herbaceum subsp. africanum chloroplast
76NC_016699GAAT310481510482511Phyllostachys propinqua chloroplast
77NC_016711GAAT311815511816612Gossypium mustelinum chloroplast
78NC_016712GAAT311807011808112Gossypium arboreum chloroplast
79NC_016718GAAT310266310267311Rhynchoryza subulata plastid
80NC_016731GAAT3895728958211Synedra acus chloroplast
81NC_016753GAAT3247832479311Colocasia esculenta chloroplast
82NC_016921GAAT3233872339711Pentactina rupicola chloroplast
83NC_016921GAAT312309012310011Pentactina rupicola chloroplast
84NC_016927GAAT310122010123011Oryza meridionalis chloroplast
85NC_016986GAAT312028112029111Ginkgo biloba chloroplast
86NC_017006GAAT33882389413Mankyua chejuensis chloroplast
87NC_017006GAAT3206812069111Mankyua chejuensis chloroplast
88NC_017006GAAT3915039151412Mankyua chejuensis chloroplast
89NC_017602GAAT3462974630913Elaeis guineensis chloroplast
90NC_017609GAAT311923311924412Phalaenopsis equestris chloroplast
91NC_017835GAAT310120810121811Oryza rufipogon chloroplast
92NC_017894GAAT311812211813312Gossypium gossypioides chloroplast
93NC_018109GAAT311717411718512Gossypium incanum chloroplast
94NC_018110GAAT311745511746612Gossypium somalense chloroplast
95NC_018111GAAT311740411741512Gossypium capitis-viridis chloroplast
96NC_018112GAAT311748711749812Gossypium areysianum chloroplast
97NC_018113GAAT311780911782012Gossypium robinsonii chloroplast
98NC_018117GAAT36482649312Datura stramonium chloroplast
99NC_018117GAAT3194481945811Datura stramonium chloroplast
100NC_018357GAAT3239112392111Magnolia denudata chloroplast
101NC_018357GAAT3409334094311Magnolia denudata chloroplast
102NC_018357GAAT3533355334612Magnolia denudata chloroplast
103NC_018357GAAT3711787118912Magnolia denudata chloroplast
104NC_018357GAAT3714147142411Magnolia denudata chloroplast
105NC_018357GAAT312657812658811Magnolia denudata chloroplast
106NC_018541GAAT3231242313411Elodea canadensis chloroplast
107NC_018541GAAT312417612418611Elodea canadensis chloroplast
108NC_018552GAAT36556656712Capsicum annuum chloroplast
109NC_018569GAAT3994499946012Trebouxiophyceae sp. MX-AZ01 chloroplast
110NC_018766GAAT3221912220111Fragaria vesca subsp. bracteata chloroplast
111NC_018767GAAT3222032221311Fragaria mandshurica plastid
112NC_019601GAAT3221772218711Fragaria chiloensis chloroplast
113NC_019602GAAT3221762218611Fragaria virginiana chloroplast
114NC_019616GAAT315522715523711Vaccinium macrocarpon plastid
115NC_019648GAAT310105310106311Festuca altissima plastid
116NC_019649GAAT3993569936611Festuca ovina plastid
117NC_019650GAAT310116710117711Festuca pratensis plastid
118NC_019651GAAT310107910108911Lolium multiflorum plastid
119NC_020019GAAT312387512388511Camellia sinensis chloroplast
120NC_020098GAAT3232992330911Tectona grandis chloroplast
121NC_020152GAAT3210502106011Quercus rubra plastid
122NC_020152GAAT312816212817211Quercus rubra plastid
123NC_020316GAAT3239952400511Magnolia officinalis chloroplast
124NC_020316GAAT3410514106111Magnolia officinalis chloroplast
125NC_020316GAAT3534175342812Magnolia officinalis chloroplast
126NC_020316GAAT3712497126012Magnolia officinalis chloroplast
127NC_020316GAAT3714857149511Magnolia officinalis chloroplast
128NC_020317GAAT3240202403011Magnolia officinalis subsp. biloba voucher SC001 chloroplast
129NC_020317GAAT3410484105811Magnolia officinalis subsp. biloba voucher SC001 chloroplast
130NC_020317GAAT3534255343612Magnolia officinalis subsp. biloba voucher SC001 chloroplast
131NC_020317GAAT3712557126612Magnolia officinalis subsp. biloba voucher SC001 chloroplast
132NC_020317GAAT3714937150311Magnolia officinalis subsp. biloba voucher SC001 chloroplast
133NC_020318GAAT3239322394211Magnolia grandiflora voucher NJ016 chloroplast
134NC_020318GAAT3406664067611Magnolia grandiflora voucher NJ016 chloroplast
135NC_020318GAAT3530075301812Magnolia grandiflora voucher NJ016 chloroplast
136NC_020318GAAT3708367084712Magnolia grandiflora voucher NJ016 chloroplast
137NC_020318GAAT3710677107711Magnolia grandiflora voucher NJ016 chloroplast
138NC_020319GAAT3317443175411Cycas revoluta chloroplast
139NC_020321GAAT32160217112Taxus mairei voucher NN014 chloroplast
140NC_020321GAAT311251611252712Taxus mairei voucher NN014 chloroplast
141NC_020321GAAT311443511444511Taxus mairei voucher NN014 chloroplast
142NC_020321GAAT312418512419511Taxus mairei voucher NN014 chloroplast
143NC_020321GAAT312421512422511Taxus mairei voucher NN014 chloroplast
144NC_020341GAAT310421810422811Arundinaria gigantea chloroplast
145NC_020361GAAT3338893389911Podocarpus totara chloroplast
146NC_020362GAAT312840412841411Heliconia collinsiana plastid
147NC_020364GAAT3462734628513Pseudophoenix vinifera plastid
148NC_020365GAAT3461684618013Calamus caryotoides plastid
149NC_020366GAAT3469624697413Bismarckia nobilis plastid
150NC_020607GAAT311896811897811Artemisia frigida chloroplast
151NC_021101GAAT3837608377112Francoa sonchifolia plastid
152NC_021101GAAT313228813229912Francoa sonchifolia plastid
153NC_021109GAAT316239516240612Pleodorina starrii plastid
154NC_021111GAAT3761957620713Cistanche deserticola chloroplast
155NC_021372GAAT310612210613211Pharus latifolius chloroplast
156NC_021423GAAT3226492265911Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
157NC_021425GAAT3236612367111Tetracentron sinense chloroplast
158NC_021425GAAT3490814909313Tetracentron sinense chloroplast
159NC_021425GAAT3862668627712Tetracentron sinense chloroplast
160NC_021425GAAT312568112569111Tetracentron sinense chloroplast
161NC_021426GAAT3245162452611Trochodendron aralioides chloroplast
162NC_021426GAAT3501685018013Trochodendron aralioides chloroplast
163NC_021426GAAT3873838739412Trochodendron aralioides chloroplast
164NC_021426GAAT312711412712411Trochodendron aralioides chloroplast
165NC_021429GAAT314122314123311Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
166NC_021430GAAT312604712605812Cymbidium sinense voucher KUN:YJB100605 chloroplast
167NC_021431GAAT312613412614512Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
168NC_021432GAAT312677012678112Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
169NC_021437GAAT311006011007011Cunninghamia lanceolata chloroplast
170NC_021449GAAT3182641827411Utricularia gibba chloroplast
171NC_021455GAAT3188101882011Prinsepia utilis plastid
172NC_021455GAAT3226282263811Prinsepia utilis plastid
173NC_021455GAAT3830118302212Prinsepia utilis plastid
174NC_021760GAAT310336310337311Triticum monococcum chloroplast
175NC_021761GAAT310181910182911Secale cereale chloroplast
176NC_021762GAAT310273810274811Triticum urartu chloroplast
177NC_021936GAAT3253782538811Najas flexilis chloroplast
178NC_021936GAAT311774111775212Najas flexilis chloroplast
179NC_022099GAAT311928311929412Medicago truncatula cultivar Jemalong 2HA plastid
180NC_022100GAAT311908211909312Medicago truncatula cultivar Borung plastid
181NC_022133GAAT310108010109011Aegilops tauschii chloroplast
182NC_022135GAAT310048610049611Aegilops speltoides isolate SPE0661 chloroplast
183NC_000926GAAT310859410860512 Guillardia theta chloroplast
184NC_000927GAAT319396019397011 Nephroselmis olivacea chloroplast
185NC_001320GAAT310120310121311 Oryza sativa Japonica Group plastid
186NC_001603GAAT36079608911 Euglena gracilis chloroplast
187NC_001666GAAT3488834889311 Zea mays chloroplast
188NC_001865GAAT311554711555812 Chlorella vulgaris chloroplast
189NC_001879GAAT3196051961511 Nicotiana tabacum plastid
190NC_002202GAAT3345183452912 Spinacia oleracea plastid
191NC_002202GAAT3408514086111 Spinacia oleracea plastid
192NC_002693GAAT3871218713212 Oenothera elata subsp. hookeri plastid plastome I
193NC_002762GAAT310081910082911 Triticum aestivum chloroplast
194NC_003119GAAT311928311929412 Medicago truncatula chloroplast
195NC_004543GAAT310031810032811 Anthoceros formosae chloroplast
196NC_004561GAAT3193671937711 Atropa belladonna chloroplast
197NC_004799GAAT311475511476612 Cyanidioschyzon merolae strain 10D chloroplast
198NC_004993GAAT3394093941911 Calycanthus floridus var. glaucus chloroplast
199NC_005086GAAT3261312614111 Amborella trichopoda chloroplast
200NC_005086GAAT3513525136413 Amborella trichopoda chloroplast
201NC_005878GAAT311106811107811 Saccharum hybrid cultivar SP-80-3280 chloroplast
202NC_005973GAAT310115810116811 Oryza nivara chloroplast
203NC_006050GAAT3247122472211 Nymphaea alba chloroplast
204NC_006084GAAT3494414945111 Saccharum hybrid cultivar NCo 310 chloroplast
205NC_006137GAAT3361383615013 Gracilaria tenuistipitata var. liui chloroplast
206NC_006290GAAT36596660712 Panax ginseng chloroplast
207NC_006290GAAT312354112355111 Panax ginseng chloroplast
208NC_006861GAAT3139371394812 Huperzia lucidula chloroplast
209NC_006861GAAT3724647247512 Huperzia lucidula chloroplast
210NC_007407GAAT3229112292111 Acorus calamus plastid
211NC_007499GAAT311933411934512 Phalaenopsis aphrodite subsp. formosana chloroplast
212NC_007500GAAT3196031961311 Nicotiana sylvestris chloroplast
213NC_007578GAAT312043012044011 Lactuca sativa chloroplast
214NC_007602GAAT3195551956511 Nicotiana tomentosiformis chloroplast
215NC_007898GAAT3191961920611 Solanum lycopersicum chloroplast
216NC_007943GAAT3192261923611 Solanum bulbocastanum chloroplast
217NC_007944GAAT311814411815512 Gossypium hirsutum chloroplast
218NC_007957GAAT37522753312 Vitis vinifera chloroplast
219NC_007957GAAT3244092441911 Vitis vinifera chloroplast
220NC_007957GAAT312747612748611 Vitis vinifera chloroplast
221NC_008096GAAT3193381934811 Solanum tuberosum chloroplast
222NC_008101GAAT3173221733211 Scenedesmus obliquus chloroplast
223NC_008101GAAT314616214617312 Scenedesmus obliquus chloroplast
224NC_008115GAAT3867798679012 Eucalyptus globulus subsp. globulus chloroplast
225NC_008155GAAT310116310117311 Oryza sativa Indica Group chloroplast
226NC_008235GAAT3216172162711 Populus alba chloroplast
227NC_008325GAAT3225522256211 Daucus carota chloroplast
228NC_008325GAAT311875811876912 Daucus carota chloroplast
229NC_008326GAAT3240242403411 Liriodendron tulipifera chloroplast
230NC_008326GAAT3410354104511 Liriodendron tulipifera chloroplast
231NC_008326GAAT3712257123612 Liriodendron tulipifera chloroplast
232NC_008326GAAT312651812652811 Liriodendron tulipifera chloroplast
233NC_008335GAAT3247712478111 Platanus occidentalis chloroplast
234NC_008335GAAT3319773198812 Platanus occidentalis chloroplast
235NC_008336GAAT3472104722213 Nandina domestica chloroplast
236NC_008359GAAT3238802389011 Morus indica chloroplast
237NC_008407GAAT3244032441311 Jasminum nudiflorum chloroplast
238NC_008407GAAT3645576456711 Jasminum nudiflorum chloroplast
239NC_008407GAAT3648306484011 Jasminum nudiflorum chloroplast
240NC_008407GAAT3651186512811 Jasminum nudiflorum chloroplast
241NC_008407GAAT3652026521211 Jasminum nudiflorum chloroplast
242NC_008407GAAT3653946540411 Jasminum nudiflorum chloroplast
243NC_008407GAAT3655866559611 Jasminum nudiflorum chloroplast
244NC_008407GAAT3656346564411 Jasminum nudiflorum chloroplast
245NC_008407GAAT310767310768412 Jasminum nudiflorum chloroplast
246NC_008407GAAT313760013761112 Jasminum nudiflorum chloroplast
247NC_008454GAAT3223882239811 Pelargonium x hortorum chloroplast
248NC_008456GAAT3236682367811 Drimys granadensis chloroplast
249NC_008456GAAT3410354104511 Drimys granadensis chloroplast
250NC_008457GAAT3400344004411 Piper cenocladum chloroplast
251NC_008457GAAT311949811950811 Piper cenocladum chloroplast
252NC_008535GAAT3466454665713 Coffea arabica chloroplast
253NC_008535GAAT312215212216211 Coffea arabica chloroplast
254NC_008590GAAT310247510248511 Hordeum vulgare subsp. vulgare chloroplast
255NC_008591GAAT310252910253911 Agrostis stolonifera chloroplast
256NC_008602GAAT3496504966011 Sorghum bicolor chloroplast
257NC_008788GAAT3246002461011 Nuphar advena chloroplast
258NC_008796GAAT311379311380412 Ranunculus macranthus chloroplast
259NC_008796GAAT311639211640211 Ranunculus macranthus chloroplast
260NC_008829GAAT3456134562311 Angiopteris evecta chloroplast
261NC_009143GAAT3217112172111 Populus trichocarpa chloroplast
262NC_009268GAAT3312173122711 Arabis hirsuta chloroplast
263NC_009573GAAT3932949330411 Rhodomonas salina chloroplast
264NC_009598GAAT3233272333711 Chloranthus spicatus chloroplast
265NC_009598GAAT311566411567512 Chloranthus spicatus chloroplast
266NC_009598GAAT311817211818211 Chloranthus spicatus chloroplast
267NC_009599GAAT3238442385411 Buxus microphylla chloroplast
268NC_009599GAAT3858748588512 Buxus microphylla chloroplast
269NC_009599GAAT312546612547611 Buxus microphylla chloroplast
270NC_009600GAAT3246052461511 Illicium oligandrum chloroplast
271NC_009600GAAT311353211354211 Illicium oligandrum chloroplast
272NC_009600GAAT312559712560711 Illicium oligandrum chloroplast
273NC_009601GAAT3285502856011 Dioscorea elephantipes chloroplast
274NC_009618GAAT3698406985112 Cycas taitungensis chloroplast
275NC_009766GAAT3191091911911 Cuscuta reflexa chloroplast
276NC_009950GAAT310121910122911 Lolium perenne chloroplast
277NC_009962GAAT3229982300811 Ceratophyllum demersum chloroplast
278NC_009962GAAT3396413965111 Ceratophyllum demersum chloroplast
279NC_009963GAAT3197961980611 Cuscuta exaltata chloroplast
280NC_010093GAAT3225872259711 Acorus americanus chloroplast
281NC_010109GAAT3203422035211 Lemna minor chloroplast
282NC_010109GAAT3241432415311 Lemna minor chloroplast
283NC_010109GAAT311838411839512 Lemna minor chloroplast
284NC_010358GAAT3862898630012 Oenothera argillicola chloroplast
285NC_010360GAAT3873708738112 Oenothera glazioviana chloroplast
286NC_010361GAAT3867438675412 Oenothera biennis chloroplast
287NC_010362GAAT3855078551812 Oenothera parviflora chloroplast
288NC_010442GAAT313839613840611 Trachelium caeruleum chloroplast
289NC_010654GAAT35834584411 Welwitschia mirabilis chloroplast
290NC_011031GAAT3656626567211 Oedogonium cardiacum chloroplast
291NC_011031GAAT313716313717311 Oedogonium cardiacum chloroplast
292NC_011713GAAT310203210204211 Festuca arundinacea chloroplast
293NC_011828GAAT3322613227212 Trifolium subterraneum chloroplast
294NC_011828GAAT3773247733411 Trifolium subterraneum chloroplast
295NC_012224GAAT3243362434611 Jatropha curcas chloroplast
296NC_012224GAAT312671812672912 Jatropha curcas chloroplast
297NC_012615GAAT3490034901513 Megaleranthis saniculifolia chloroplast
298NC_012898GAAT3115291154012 Aureococcus anophagefferens chloroplast
299NC_012927GAAT310445710446711 Bambusa oldhamii chloroplast
300NC_013088GAAT310454310455311 Dendrocalamus latiflorus chloroplast
301NC_013273GAAT3491334914311 Coix lacryma-jobi chloroplast
302NC_013359GAAT3405614057212 Bryopsis hypnoides chloroplast
303NC_013823GAAT3872088721912 Typha latifolia chloroplast
304NC_013991GAAT3467034671513 Phoenix dactylifera chloroplast
305NC_014056GAAT3633186332811 Oncidium Gower Ramsey chloroplast
306NC_014056GAAT311711911713012 Oncidium Gower Ramsey chloroplast
307NC_014062GAAT310405810406811 Anomochloa marantoidea chloroplast
308NC_013707GAAT3238432385311 Olea europaea chloroplast
309NC_013707GAAT3397443975411 Olea europaea chloroplast