ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Back To Motif Summary

Chloroplast Motifs - Imperfect AGAAT Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_008117AGAAT15181061818075 Zygnema circumcarinatum chloroplast
2NC_018109AGAAT4443144433320Gossypium incanum chloroplast
3NC_016668AGAAT4446864470520Gossypium raimondii chloroplast
4NC_017894AGAAT4447054472420Gossypium gossypioides chloroplast
5NC_008097AGAAT413295313297321 Chara vulgaris chloroplast
6NC_018110AGAAT4444484446720Gossypium somalense chloroplast
7NC_009598AGAAT49395941521 Chloranthus spicatus chloroplast
8NC_018111AGAAT4442834430220Gossypium capitis-viridis chloroplast
9NC_014675AGAAT4332133323220Isoetes flaccida chloroplast
10NC_018112AGAAT4444724449120Gossypium areysianum chloroplast
11NC_020098AGAAT3677726778615Tectona grandis chloroplast
12NC_002762AGAAT3807548076714 Triticum aestivum chloroplast
13NC_020341AGAAT3830328304514Arundinaria gigantea chloroplast
14NC_018113AGAAT3503405035415Gossypium robinsonii chloroplast
15NC_018112AGAAT3502245023815Gossypium areysianum chloroplast
16NC_021760AGAAT3813778139014Triticum monococcum chloroplast
17NC_021761AGAAT3811638117614Secale cereale chloroplast
18NC_021762AGAAT3810548106714Triticum urartu chloroplast
19NC_022133AGAAT3801668017914Aegilops tauschii chloroplast
20NC_022135AGAAT3798577987014Aegilops speltoides isolate SPE0661 chloroplast
21NC_001320AGAAT3809938100614 Oryza sativa Japonica Group plastid
22NC_001865AGAAT3214862150015 Chlorella vulgaris chloroplast
23NC_013088AGAAT3833938340614 Dendrocalamus latiflorus chloroplast
24NC_005973AGAAT3809468095914 Oryza nivara chloroplast
25NC_006861AGAAT3594045941815 Huperzia lucidula chloroplast
26NC_006861AGAAT314045414046815 Huperzia lucidula chloroplast
27NC_007942AGAAT3105671058014 Glycine max chloroplast
28NC_007944AGAAT3507095072315 Gossypium hirsutum chloroplast
29NC_008155AGAAT3809508096314 Oryza sativa Indica Group chloroplast
30NC_008590AGAAT3815378155014 Hordeum vulgare subsp. vulgare chloroplast
31NC_008641AGAAT3507625077615 Gossypium barbadense chloroplast
32NC_011032AGAAT3798537986614 Brachypodium distachyon chloroplast
33NC_012927AGAAT3832898330214 Bambusa oldhamii chloroplast
34NC_016668AGAAT3505245053815Gossypium raimondii chloroplast
35NC_014674AGAAT3101311014515Castanea mollissima chloroplast
36NC_015204AGAAT3506725068615Gossypium thurberi chloroplast
37NC_015803AGAAT3836728368514Indocalamus longiauritus plastid
38NC_015817AGAAT3836128362514Phyllostachys edulis chloroplast
39NC_015820AGAAT3836708368314Acidosasa purpurea chloroplast
40NC_015826AGAAT3836338364614Phyllostachys nigra var. henonis chloroplast
41NC_015830AGAAT3833928340514Bambusa emeiensis chloroplast
42NC_015831AGAAT3834888350114Ferrocalamus rimosivaginus plastid
43NC_015990AGAAT3820508206314Panicum virgatum chloroplast
44NC_018111AGAAT3501145012815Gossypium capitis-viridis chloroplast
45NC_016670AGAAT3507975081115Gossypium darwinii chloroplast
46NC_016677AGAAT3822648227714Leersia tisserantii plastid
47NC_016690AGAAT3508205083415Gossypium tomentosum chloroplast
48NC_016692AGAAT3506725068615Gossypium herbaceum subsp. africanum chloroplast
49NC_016699AGAAT3836268363914Phyllostachys propinqua chloroplast
50NC_016711AGAAT3507255073915Gossypium mustelinum chloroplast
51NC_016712AGAAT3506325064615Gossypium arboreum chloroplast
52NC_016718AGAAT3824278244014Rhynchoryza subulata plastid
53NC_016927AGAAT3810068101914Oryza meridionalis chloroplast
54NC_017835AGAAT3809958100814Oryza rufipogon chloroplast
55NC_017894AGAAT3505685058215Gossypium gossypioides chloroplast
56NC_018109AGAAT3500555006915Gossypium incanum chloroplast
57NC_018110AGAAT3502005021415Gossypium somalense chloroplast