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ChloroMitoSSRDB 2.00
Webserver cum Database of Cholorplast and Mitochondrial Microsatellites
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Chloroplast SSRs
Mitochondrial SSRs
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All Perfect Repeat Motifs of Chloroplast Genomes
Click on the motif to get repeats
T
G
C
A
TG
TC
TA
GT
GA
CT
AT
AG
AC
TTG
TTA
TGT
TGC
TGA
TCT
TCG
TCC
TCA
TAT
TAG
TAC
TAA
GTT
GTA
GGC
GGA
GCT
GAT
GAG
GAC
GAA
CTT
CTG
CTC
CTA
CGT
CGG
CGC
CCG
CCA
CAG
CAC
CAA
ATT
ATG
ATC
ATA
AGT
AGC
AGA
ACT
ACG
ACA
AAT
AAG
AAC
TGG
GTG
GCC
GCA
TTTG
TTTC
TTTA
TTGT
TTGG
TTGC
TTCT
TTCC
TTCA
TTAT
TTAG
TTAC
TTAA
TGTT
TGTC
TGTA
TGGG
TGGA
TGCA
TGAT
TCTT
TCTA
TCGT
TCCT
TCAT
TCAA
TATT
TATG
TATC
TAGT
TAGA
TACT
TACA
TAAT
TAAA
GTTT
GTTG
GTCT
GTCG
GTAG
GGTT
GGGT
GGAT
GGAG
GGAA
GCGG
GCCT
GCAA
GATG
GATA
GAGG
GAAT
GAAG
GAAA
CTTT
CTTG
CTTC
CTTA
CTAT
CTAG
CTAC
CTAA
CCGA
CCCT
CCAT
CATT
CATA
CAAT
CAAC
CAAA
ATTT
ATTG
ATTC
ATTA
ATGT
ATGG
ATCC
ATCA
ATAG
ATAC
ATAA
AGTT
AGTA
AGGT
AGGC
AGAT
AGAC
AGAA
ACTT
ACTA
ACCC
ACCA
ACAT
AATT
AATG
AATC
AATA
AAGT
AAGG
AAGC
AAGA
AACT
AACG
AACC
AAAT
AAAG
AAAC
TGAG
TCCA
GGGA
TAAC
CCTT
GCCC
TCGA
ACAA
CCCA
TCCC
ATGA
TCTG
CGAT
CAGG
AGGG
GAGT
AGCC
CCTA
CGGG
CGAG
TTTTG
TTTTC
TTTTA
TTTGT
TTTCT
TTTCA
TTTAT
TTTAG
TTTAA
TTGGA
TTCTT
TTCTG
TTCTA
TTCCC
TTATT
TTATA
TTAGA
TTAAT
TTAAA
TGTTG
TGAGA
TGAAT
TGAAA
TCTTT
TCTTG
TCTAT
TCCTA
TATTT
TATTC
TATTA
TATGG
TATCC
TATAT
TATAA
TAGGT
TACCA
TAATT
TAATA
TAAGA
TAAAT
TAAAG
TAAAC
TAAAA
GGAGG
GGAAA
GAAAA
CTTTT
CTTCT
CTTAT
CTCTT
CTAAT
CCTTC
CCATA
CCAAT
CAGAA
CAATG
CAAAT
ATTTT
ATTTC
ATTTA
ATTGA
ATTCA
ATTAT
ATTAG
ATTAA
ATGAA
ATCTT
ATCCT
ATCAA
ATATT
ATATA
ATAGA
ATACC
ATAAT
ATAAG
AGAGT
AGAAT
AGAAA
ACTTT
ACTTA
ACTAT
ACCGA
AATTG
AATTC
AATTA
AATCA
AATAT
AATAG
AATAA
AAGGG
AAGGA
AAGAG
AAGAA
AACTA
AAATT
AAATC
AAATA
AAAGT
AAAGA
AAAAT
AAAAG
TCAAA
TAATG
TTTGA
ATCTA
TTCCG
AGATA
TTGAT
CAAAA
GTTTA
CCAAC
ATGTA
AATGA
TGGCC
ATGGT
TAGAA
GGACC
TCATT
GAAAG
TAGAG
TGCAT
TTATC
ACGGA
TTAAG
ATACT
TACTA
TATTG
AATTT
GAATA
CTATT
TATGA
ATACA
GCAAT
AAACA
TAGTA
CAATT
TCACC
CATTG
AAGCA
TTATG
CAATC
TTTTTA
TTTTAT
TTTCTA
TTTCAC
TTTAAA
TTGTTT
TTGTAT
TTCTTT
TTCTAT
TTCTAA
TTCATT
TTCATA
TTATAT
TTATAA
TTAATT
TTAACG
TTAAAC
TGGAGT
TCTTTT
TCTTCC
TCTTCA
TCATAT
TATTTT
TATTTA
TATTAG
TATTAA
TATAGT
TAGTAA
TAGAGC
TAAAAA
GTTGCG
GTGATG
GGTTCC
GGCGAC
GGATAA
GATATT
GATAAA
GAAGGG
CTTTTT
CTTATT
CTTATC
CTCTTG
CTACCT
CGTTAA
CGCCGT
CCGGAA
CATAGT
CAATGG
CAATAT
CAAGAT
ATTTTA
ATTGAT
ATTCTA
ATTCAG
ATTAGT
ATTAAT
ATTAAA
ATCTTT
ATCTAT
ATATTT
ATATGA
ATATCT
ATATAG
ATATAC
ATAGAA
ATAATG
ATAAAT
AGTAAT
AGGGGA
AGCCAC
ACTAAT
ACGTAA
AATTTG
AATCTG
AAGTTT
AAGTAC
AAGCAA
AAGAAC
AAATAG
AAAGAG
AAAGAA
AAAATT
AAAATA
AAAAAT
AAAAAG
TTTTGA
TCTGAA
TCCTCT
TATATG
GAGGAA
AGTCGA
GAGCAG
TATAGA
TCTATC
ATTACT
AAATAT
TCCCCA
GGAGTG
CTATAT
ATCCAA
CTATAA
ACTTCT
TTTCAT
TCTATT
CAGGAA
AATTGA
GTTGGT
GTAAGA
TTTCTT
TTATAG
TAAAAT
TTTACT
TAAATG
TCAAAA
CAAGCC
TTTTAA
TAAATT
TCAAAT
TCTGGT
CCAATG
ATTTTG
AGGAAG
TATAAG
TTAAAA
ACTTAG
GAATTT
GAGGAT
TGACGA
TAGAAT
ATTTTC
TTAGTA
GAGAAT
AGAATG
CTATTA
AAAAGG
TTTTCT
TCTTAT
AATAAC
TTTTTC
TCCAAC
CTATTC
CAAAAA
TCCTTC
CATTCT
TCCTTA
TCATTC
CTAATA
GAATAA
ATCGTC
CATCCT
GAATAG
ATCAAT
CCTCTT
AAAAGA
TATGTT
TTATTT
ATATAA
ATTCAT
GGTTCG
TTTTTG
GAAAAG
AAAACA
AGAAAA
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